ID: uc001umd.2_intron_13_0_chr13_20041485_r.3p
GENE: (7)
chr13:20041435-20041684-


(1)
AGO1.ip OTHER.mut 		(2)
BRAIN 		(6)
BREAST 		(13)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES 		(1)
UTERUS

Sense strand
TGATGAATATAATTTTATTGTTTGAAAACTTCCCATGAATGTTATGTTTTTCCCTTAGTCTACTCTAGAAAATACATTTTAAATAATTCATGATAGTAGAATTCTTAATGGGGATGAGTCAGTAGTTTGTGGTCTTTAAATATTCCTGTCTCTTCTTGCAGAGGGAAATGAACTTTTTTTTTTTTTTTTTTATATTACAGGAGACAGCAGTATTTTTCTGACTTATTTAACATTTTAGATACTGCCATTA
..............................................................................................................((((.(((.(((..(((((.......)))))....))).))).))))..(((((((((.(((......))).)))))))))...........................................................
.............................................................................................................110.......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189783TAX577738(Rovira)
total RNA. (breast)		SRR189785SRR189784SRR040030(GSM532915)
G013N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR191530(GSM715640)
132genomic small RNA (size selected RNA from . (breast)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040043(GSM532928)
G428T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTG.......................................................2422.000.0012.004.003.002.00--1.00---------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCAG.....................................................2616.000.0011.005.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTTTT.....................................................2614.000.008.003.00-1.00-1.001.00---------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTTTG.....................................................2614.000.007.001.003.001.00---2.00--------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTAG......................................................2510.000.007.001.002.00-------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCAT.....................................................268.000.003.005.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTAAG.....................................................267.000.006.001.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCTG.....................................................265.000.004.001.00--------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTACAG....................................................................................................................205.000.00----4.00-----1.00-----------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAAG......................................................254.000.002.001.00----1.00---------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTAAT.....................................................264.000.00-4.00--------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTCAT........................................................244.000.00-2.001.00--1.00----------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTATAG....................................................................................................................203.000.00----1.00-------------1.00-----1.00---------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCAA......................................................253.000.001.00-1.00---1.00---------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATAT.......................................................2513.003.002.001.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCAT......................................................253.000.00-2.001.00-------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTTAT.....................................................263.000.002.001.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCTG......................................................253.000.003.00---------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCG......................................................253.000.00-2.00----1.00---------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTACAT....................................................................................................................203.000.00----2.00--------1.00--------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATCAAG...................................................262.000.00------2.00---------------------------------
........................................................................................CATGATAGTAGAATTCTG................................................................................................................................................182.000.00-------------------------------1.00----1.00---
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTCCCG.......................................................252.000.001.00--1.00------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCGG.....................................................262.000.001.001.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAACAG....................................................272.000.001.00----1.00----------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTCGGG.......................................................252.000.00---2.00------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAAAG.....................................................262.000.00-1.00----1.00---------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTG.......................................................2581.750.620.620.880.12---0.12---------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTACA.....................................................................................................................191.000.00----1.00-----------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATCCCG...................................................261.000.001.00---------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCCAT.....................................................261.000.001.00---------------------------------------
..................................................................................................................................................................................TTTTTTTTTTTTTATATTGCTA..................................................221.000.00-----1.00----------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGCTGT...................................................................................................................211.000.00--------1.00-------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGCTTG...................................................................................................................211.000.00-----------1.00----------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTTC......................................................251.000.00-----1.00----------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCAC.....................................................261.000.00-----1.00----------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTATTG....................................................................................................................201.000.00--------------------------1.00-------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTACATT.................................................281.000.00-----1.00----------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATTTA....................................................2711.001.00-1.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCTC......................................................251.000.001.00---------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTCCGG.......................................................251.000.00---1.00------------------------------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTCTAG..................................................261.000.001.00---------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATAAGG.....................................................251.000.001.00---------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATAAATC....................................................261.000.00--1.00-------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATTTTA...................................................2711.001.00-1.00--------------------------------------
..................................................................................ATAATTCATGATAGTAAAAA....................................................................................................................................................201.000.00------------1.00---------------------------
..................................................................................................................TGAGTCAGTAGTTTGTATAC....................................................................................................................201.000.00----1.00-----------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATATTTTTT..................................................301.000.00------1.00---------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATT......................................................2411.001.00--1.00-------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATATTTT....................................................281.000.001.00---------------------------------------
........................................................................................................................................................................TGAACTTTTTTTTTTTTTTTTTTCTT........................................................261.000.00---1.00------------------------------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTCATG..................................................261.000.001.00---------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAATAT....................................................271.000.001.00---------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGCTT....................................................................................................................201.000.00--------------------1.00-------------------
..................................................................................................................TGAGTCAGTAGTTTGTTTTG....................................................................................................................201.000.00---------------1.00------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTCCAC.......................................................251.000.00---1.00------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTATAT....................................................................................................................201.000.00----1.00-----------------------------------
...............................................................................................GTAGAATTCTTAATGGGGATGAGT...................................................................................................................................2421.001.00-------------------------------------0.500.50-
..................................................................................................................TGAGTCAGTAGTTTGTGGT.....................................................................................................................1911.001.00-----------------1.00----------------------
..................................................................................................................TGAGTCAGTAGTTTGTAAGG....................................................................................................................201.000.00-------------------1.00--------------------
..ATGAATATAATTTTAGTC......................................................................................................................................................................................................................................181.000.00--------------1.00-------------------------
................................................................................AAATAATTCATGATAGGT........................................................................................................................................................181.000.00----------------------------1.00-----------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCTC.....................................................261.000.00-------1.00--------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATATTTAG...................................................291.000.00--1.00-------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATTTTG...................................................2811.001.00-1.00--------------------------------------
.......................................................................................................................................................................ATGAACTTTTTTTTTTTTTTTTCAGC.........................................................261.000.00---1.00------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCCC.....................................................261.000.00---1.00------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAACTG....................................................271.000.00-----1.00----------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATTCCAG..................................................2811.001.00--1.00-------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATACTG.....................................................261.000.001.00---------------------------------------
.................................................................................................................................................................................TTTTTTTTTTTTTTATATTCTG...................................................221.000.001.00---------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTCAA.....................................................261.000.001.00---------------------------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTTATATTCTTG..................................................251.000.001.00---------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTTTGG....................................................................................................................201.000.00----------------------------------1.00-----
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATTTAG...................................................2811.001.00-1.00--------------------------------------
...................................................................................................................GAGTCAGTAGTTTGTTCAG....................................................................................................................191.000.00---------------------------------1.00------
..................................................................................................................TGAGTCAGTAGTTTGTGCAT....................................................................................................................201.000.00----1.00-----------------------------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTCCTT..................................................261.000.00-----1.00----------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCCCT.....................................................261.000.00-------1.00--------------------------------
................................................................................................................................................................................TTTTTTTTTTTTTTTATATTATTTG.................................................251.000.00-1.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCAC......................................................251.000.00-1.00--------------------------------------
.....................................................................................................................................................................AAATGAACTTTTTTTTACAT.................................................................201.000.00-----1.00----------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATTTACG..................................................2911.001.00-1.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTATT.....................................................261.000.00-1.00--------------------------------------
......................................................................................................................................................................................TTTTTTTTTATATTACGAAT................................................201.000.00----1.00-----------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTCGGC.......................................................251.000.00---1.00------------------------------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTCCAT..................................................261.000.00------1.00---------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGGTGTT..................................................................................................................2211.001.00-----------1.00----------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGGTTTTT.................................................................................................................2311.001.00-----------------------------1.00----------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTA.....................................................2331.001.000.670.33--------------------------------------
.........................................................................................................................................................................GAACTTTTTTTTTTTTTTTTCAAT.........................................................241.000.001.00---------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTTGT.....................................................................................................................191.000.00--------------------------------1.00-------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCATA.....................................................261.000.00-----1.00----------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTCTGC.......................................................251.000.00-------1.00--------------------------------
.......................................................................................................................................................................ATGAACTTTTTTTTTTTTTTTTTTGGGC.......................................................281.000.00-------1.00--------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATTCT....................................................2611.001.001.00---------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATTTTG...................................................2711.001.00-1.00--------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTATAA....................................................................................................................201.000.00----1.00-----------------------------------
.......................................................................................................................................................................ATGAACTTTTTTTTTTTTTTTTTGTC.........................................................261.000.00---1.00------------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTAC....................................................2511.001.00-1.00--------------------------------------
.......................................................................................................................................................................ATGAACTTTTTTTTTTTTTCAGC............................................................231.000.00-------1.00--------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTCC....................................................251.000.00-----1.00----------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTAGT.....................................................261.000.00-1.00--------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGTGTT...................................................................................................................211.000.00-------------------------1.00--------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATTTT....................................................2711.001.00-----1.00----------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTCTG...................................................261.000.00--1.00-------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATCG.......................................................241.000.00---1.00------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGGTGGT..................................................................................................................2211.001.00--------1.00-------------------------------
..............................................................................................................................................................CAGAGGGAAATGAACTCTG.........................................................................191.000.00----------------1.00-----------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTTATATTCACG..................................................251.000.00-1.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTAA......................................................251.000.00-1.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATT......................................................2511.001.001.00---------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAATG.....................................................261.000.001.00---------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATTATCAG.................................................291.000.00------1.00---------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAATAG....................................................271.000.00-----1.00----------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTTCT.....................................................261.000.00---1.00------------------------------------
....................................................................................................................................................................................TTTTTTTTTTTATATTACAG..................................................2011.001.00------1.00---------------------------------
..............................................TTTTTCCCTTAGTCTGGAC.........................................................................................................................................................................................191.000.00----------------------1.00-----------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTACG...................................................2611.001.00-1.00--------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTAGGG....................................................................................................................201.000.00----1.00-----------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATTTTTT..................................................2811.001.00---1.00------------------------------------
........................................................................................................................................................................TGAACTTTTTTTTTTTTTTTTAGGG.........................................................251.000.00-------1.00--------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATTT.....................................................2611.001.00--1.00-------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATTGAG.....................................................261.000.00---1.00------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATAATTG....................................................261.000.00-1.00--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATTATATC.................................................301.000.00-----1.00----------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGGTTTTA.................................................................................................................2311.001.00--------1.00-------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATTAG....................................................261.000.001.00---------------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGTTTT...................................................................................................................211.000.00--------1.00-------------------------------
..................................................................................................................TGAGTCAGTAGTTTGTGCTTC...................................................................................................................211.000.00-----------------------------------1.00----
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTACTAG.................................................271.000.00--1.00-------------------------------------
.............................................................................................................................................................................................................AGCAGTATTTTTCTGAGG...........................181.000.00----1.00-----------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATAG.....................................................2630.670.33-0.67--------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTT.......................................................2580.620.620.250.38--------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTAT.........................................................2380.620.620.380.25--------------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTATAG..................................................2720.500.500.50---------------------------------------
........................................................................................................................................................................................................................TCTGACTTATTTAACATTTTAGATACTGC.....2920.500.50---------------------------------------0.50
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTA.....................................................2420.500.50-----0.50----------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATAT.......................................................2340.500.50-0.25----0.25---------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTAG....................................................2520.500.50-0.50--------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATATATG....................................................2730.330.33-----0.33----------------------------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTATAAG.................................................2730.331.000.33---------------------------------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTAATG..................................................2630.331.00-0.33--------------------------------------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTAG....................................................2430.331.000.33---------------------------------------
...........................................................................................................................................................................ACTTTTTTTTTTTTTTTTTTATAT.......................................................2430.330.33-0.33--------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATCG.....................................................2540.250.50-0.25--------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATAATG.....................................................2740.250.25-0.25--------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATAG.....................................................2540.250.500.25---------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATATTG...................................................2740.250.500.25---------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATA........................................................2440.250.25--0.25-------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATAAAA...................................................2740.250.50-0.25--------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATCTG....................................................2640.250.50--0.25-------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATCAG......................................................2680.250.620.25---------------------------------------
............................................................................................................................................................................CTTTTTTTTTTTTTTTTTTATATCC.....................................................2540.250.50---0.25------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTTTT.....................................................2780.250.62-0.12-0.12------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTTG......................................................2680.120.62-0.12--------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTATT.....................................................2780.120.62-0.12--------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTTT......................................................2680.120.620.12---------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTTAG.....................................................2780.120.62-0.12--------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATTCAG.....................................................2780.120.62---0.12------------------------------------
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATGTT......................................................2680.120.62-------0.12--------------------------------

Antisense strand
TGATGAATATAATTTTATTGTTTGAAAACTTCCCATGAATGTTATGTTTTTCCCTTAGTCTACTCTAGAAAATACATTTTAAATAATTCATGATAGTAGAATTCTTAATGGGGATGAGTCAGTAGTTTGTGGTCTTTAAATATTCCTGTCTCTTCTTGCAGAGGGAAATGAACTTTTTTTTTTTTTTTTTTATATTACAGGAGACAGCAGTATTTTTCTGACTTATTTAACATTTTAGATACTGCCATTA
..............................................................................................................((((.(((.(((..(((((.......)))))....))).))).))))..(((((((((.(((......))).)))))))))...........................................................
.............................................................................................................110.......................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189782SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR189783TAX577738(Rovira)
total RNA. (breast)		SRR189785SRR189784SRR040030(GSM532915)
G013N. (cervix)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191621(GSM715731)
16genomic small RNA (size selected RNA from t. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191595(GSM715705)
72genomic small RNA (size selected RNA from t. (breast)		SRR191530(GSM715640)
132genomic small RNA (size selected RNA from . (breast)		SRR189786SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040043(GSM532928)
G428T. (cervix)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)
..........................................................................................................................................................................AACTTTTTTTTTTTTTTTTTTATGT....................................................... 2581.000.00---------1.00------------------------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTT..................................................... 241.000.00-----------------------1.00----------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTTTT................................................... 261.000.00---------------------------1.00------------
.............................................................................................................................................................................TTTTTTTTTTTTTTTTTTATATTAAA................................................... 2621.000.00----------1.00-----------------------------
................................................................................................................................................................................TTTTTTTTTTTTTTTATATTTGA................................................... 231.000.00------------------------------1.00---------
..............................................................................................................................................................................TTTTTTTTTTTTTTTTTATATTG..................................................... 231.000.00---------------------1.00------------------
............................................................................................ATAGTAGAATTCTTAAGA............................................................................................................................................ 181.000.00----1.00-----------------------------------
...............................................................................................................................................................................TTTTTTTTTTTTTTTTATATTGT.................................................... 231.000.00---------1.00------------------------------
........................................................................................AATTCTACTATCATG................................................................................................................................................... 1560.330.33------------0.33---------------------------
............................................................................................................................................................................ATATAAAAAAAAAAAAAAAAAAG....................................................... 2340.250.25---------0.25------------------------------