ID: uc001ujj.1_intron_5_0_chr12_132472436_f.3p
GENE: (6)
chr12:132474309-132474558+


(1)
AGO2.ip
(1)
BRAIN
(1)
BREAST
(10)
CELL-LINE
(2)
HEART
(1)
LIVER
(2)
OTHER
(3)
SKIN
(1)
XRN.ip

Sense strand
GAAAAGTCAAGCTAAATATTGATGGTGGTTTTTGCTTATAGTCATGTTTCTCCTAATCCACCCTAAGAGCATACGAGGATGTATATGACAGTGAATTGTATGTAATTTTAGTCTGAGAAGATTTAAAAAAAGTTACATATCCTTTTTTTTCCAGCATGACATAGAGTACAACATACAATTCTTGCACTTTTATTCACCAGCTCGTTAGAACTGTGGTGCGCCATCACGAGGAGAAGCAGCTCCGTGAAGA
..........................................................................(((((((......((((....))))..(((((((((((((....))))).....)))))))).)))))))..........................................................................................................
..................................................................67.....................................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189783SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.....................................................................................................................................TACATATCCTTTTTTAG....................................................................................................1722.000.00-15.00-2.003.001.001.00-----------------
.......................................................................TACGAGGATGTATATGTAG................................................................................................................................................................197.000.007.00-----------------------
.......................................................................TACGAGGATGTATATGTAT................................................................................................................................................................194.000.004.00-----------------------
.......................................................................TACGAGGATGTATATATTG................................................................................................................................................................193.000.003.00-----------------------
.......................................................................TACGAGGATGTATATGTTT................................................................................................................................................................192.000.001.00-------------1.00---------
.................................................................................................................................................................................................................ACTGTGGTGCGCCATCACGAGGAGA................2512.002.00--1.00------------------1.00--
......................................................................................................................................................................TACAACATACAATTCTTGCACTTT............................................................2412.002.00--2.00---------------------
........................................................................................................................................................................................................CTCGTTAGAACTGTGGTGCGCCATA.........................251.000.00-----------1.00------------
.......................................................................TACGAGGATGTATATTG..................................................................................................................................................................171.000.001.00-----------------------
.........................................................................................................................................TATCCTTTTTTTTCCGTTC..............................................................................................191.000.00-----1.00------------------
.........................................................................................................................................TATCCTTTTTTTTCCTGTG..............................................................................................191.000.00-------1.00----------------
......................................................................................................................................ACATATCCTTTTTTTTAATT................................................................................................201.000.00------1.00-----------------
.................................................................................................................................................................................ATTCTTGCACTTTTATTCACCAGCTCG..............................................2711.001.00--------1.00---------------
..................................................TCCTAATCCACCCTATACT.....................................................................................................................................................................................191.000.00----------1.00-------------
......................................................................................................................................ACATATCCTTTTTTTTATTT................................................................................................201.000.00-----1.00------------------
....................................................................................................................................TTACATATCCTTTTTTTTTG..................................................................................................201.000.00-1.00----------------------
.......................................................................................................................................CATATCCTTTTTTTTCTAAG...............................................................................................201.000.00----1.00-------------------
.............................................................................................................................................................................................................................CATCACGAGGAGAAGCAG...........1811.001.00---------1.00--------------
............................................................................................................................................................................................................................CCATCACGAGGAGAAGCAGCT.........2111.001.00-----------1.00------------
.......................................................................TACGAGGATGTATATATAG................................................................................................................................................................191.000.001.00-----------------------
......................................................................................................................................................................TACAACATACAATTCTTGCAC...............................................................2111.001.00----------1.00-------------
..................................................................................................................................................TTTTCCAGCATGACATAGAG....................................................................................2011.001.00------------------1.00-----
....................................................................................................................................TTACATATCCTTTTTTTTTTG.................................................................................................211.000.00------1.00-----------------
........................................................................................................................................................AGCATGACATAGAGTACAACAT............................................................................2211.001.00--------------------1.00---
................................................................................................................................................................................................................................CACGAGGAGAAGCAGCTC........1811.001.00----------------------1.00-
............................................................................................................................................................................................................TTAGAACTGTGGTGCGCCATCACG......................2411.001.00------------1.00-----------
.......................................................................................................................................................................................................................GTGCGCCATCACGAGGAGAAGCAGCTCCGCG....311.000.00--------1.00---------------
..............................................................................................................................................................................................................AGAACTGTGGTGCGCCATCACGAGGAGAAGC.............3111.001.00-------------1.00----------
.......................................................................................................................................CATATCCTTTTTTTTCAAG................................................................................................191.000.00---1.00--------------------
.......................................................................................................................................CATATCCTTTTTTTTCAAAG...............................................................................................201.000.00---1.00--------------------
.......................................................................TACGAGGATGTATATATAT................................................................................................................................................................191.000.001.00-----------------------
..........................................................CACCCTAAGAGCATACGAGGATGTATATGACA................................................................................................................................................................3211.001.00-------1.00----------------
............................................................CCCTAAGAGCATACGAGGATGTATATGACA................................................................................................................................................................3011.001.00-------1.00----------------
................................................................................................................................................................................................................................CACGAGGAGAAGCAGC..........1630.330.33-----------------------0.33
.........................................................................................................................................TATCCTTTTTTTTCCAG................................................................................................1750.200.20-----0.20------------------

Antisense strand
GAAAAGTCAAGCTAAATATTGATGGTGGTTTTTGCTTATAGTCATGTTTCTCCTAATCCACCCTAAGAGCATACGAGGATGTATATGACAGTGAATTGTATGTAATTTTAGTCTGAGAAGATTTAAAAAAAGTTACATATCCTTTTTTTTCCAGCATGACATAGAGTACAACATACAATTCTTGCACTTTTATTCACCAGCTCGTTAGAACTGTGGTGCGCCATCACGAGGAGAAGCAGCTCCGTGAAGA
..........................................................................(((((((......((((....))))..(((((((((((((....))))).....)))))))).)))))))..........................................................................................................
..................................................................67.....................................................................................154..............................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR189784SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR189783SRR037937(GSM510475)
293cand2. (cell line)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR189785SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................................................CAATTCACTGTCATATACA........................................................................................................................................................ 1912.002.00---------1.00------1.00-------
.................ATTGATGGTGGTTTTTCCAG..................................................................................................................................................................................................................... 201.000.00-----------------1.00------
..........................................................................................................................................ATCCTTTTTTTTCCATTTT............................................................................................. 191.000.00---------------1.00--------
.....................ATGGTGGTTTTTGCTTATGCC................................................................................................................................................................................................................ 211.000.00-------------------1.00----
.....................................................................................................................................TACATATCCTTTTTTGAGT.................................................................................................. 191.000.00--1.00---------------------
...................................................................................................................................................................GAGTACAACATACAATAGG.................................................................... 191.000.00--------1.00---------------