ID: uc001uje.5
GENE: ULK1(6)
chr12:132393313-132393492+


(3)
AGO1.ip
(1)
AGO1.ip OTHER.mut
(3)
AGO2.ip
(2)
AGO3.ip
(3)
B-CELL
(5)
BRAIN
(24)
BREAST
(40)
CELL-LINE
(5)
CERVIX
(1)
FIBROBLAST
(8)
HEART
(4)
HELA
(9)
LIVER
(3)
OTHER
(1)
RRP40.ip
(46)
SKIN
(1)
UTERUS
(1)
XRN.ip

Sense strand
CAACCCCGCCGGCCGCCGCGCCAACCCCAACAGCATCCGCGTCAAGATCGGTCAGCCCGCGGGCAGGCAGGCGGGCCCGGCGGGGAGGGGCTCCGGGGCCGGCGCCGGTCCTGACGCTTCTCTCCCGCAGCTGACTTCGGCTTCGCGCGGTACCTCCAGAGCAACATGATGGCGGCCACA
.....................................................................((....))..((((((((..((..((((((((....))))))))..))..))).)))))....................................................
...................................................................68............................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
TAX577579(Rovira)
total RNA. (breast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR040032(GSM532917)
G603N. (cervix)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
............................................................................................................TCCTGACGCTTCTCTCCCGCAGT.................................................23150.0043.00----1.00-2.00---3.001.002.00--1.00------2.00--1.002.00-1.00-1.002.00------2.001.001.001.00------2.001.00-1.002.00--1.00----1.00---1.00----1.00-----------1.00----1.00--------1.00-----1.001.001.00-1.00-1.00-------1.00--1.00--1.001.001.00--------1.001.00--1.00-----------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAG..................................................22143.0043.001.008.00--4.002.00-2.00-1.00------2.00--2.00-1.001.001.00-1.00-1.001.00------------1.00-1.00---2.00------1.00-2.00----1.00----------1.00----1.00-1.00---------1.00----------------------1.00------------------1.00-----1.00----------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGA.................................................23123.0043.00---------4.00-2.00--1.00----1.00---1.00--1.001.00--------------2.00----------1.00---1.00-----------------1.00----------------1.00-------------1.00------1.00---------------1.001.00-------1.00--1.00------------
............................................................................................................TCCTGACGCTTCTCTCCCG.....................................................19122.0022.0014.00----------1.00------2.00-2.00----------------2.00----------------------------------------------1.00---------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCA...................................................21115.0015.00------2.00---2.00----1.001.00------1.001.001.00-----1.00-------------------------1.00------------------------------1.00----1.00-----1.00-------------------------------------------1.00----------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGT.................................................22112.001.00-----1.00------1.001.00--------------------1.00-----1.00--1.00-2.00-------------1.00-------------------------1.00----------------------1.00--------------------------1.00------------------
............................................................................................................TCCTGACGCTTCTCTCCCGC....................................................2019.009.00-2.00----------------1.00----------------------------------1.00---------1.00--1.00----------------1.00----------------------------------------1.00---------------1.00-------------
............................AACAGCATCCGCGTCAAGATCGG.................................................................................................................................2319.009.00--9.00-------------------------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAT..................................................2217.0015.00------1.00-----------------2.00---------------------------------------------------1.00---1.00-----------------------------1.00---------------------------------1.00---------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTT................................................2416.0043.00-------------1.00-------1.00-----------------1.00----------------------------------1.00------------------------------------1.00---------------1.00--------------------------
.................................CATCCGCGTCAAGATCG..................................................................................................................................1715.005.00------------------------------------1.00-------------1.00----------------------------------------------1.00------------------1.00-----------------1.00-------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTA................................................2414.0043.00-----------------------------2.00------------------------------------------------------------------1.00-------1.00-------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGA.................................................2214.001.00-------1.00-------------1.00-------------1.00-----------------------------------1.00----------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATT.................................................2313.0015.00----------------------------------------------1.00---------------------1.00----------------------------------------------------------------------------1.00--------
........................................................................GGGCCCGGCGGGGAGGGT..........................................................................................183.000.00--------3.00-------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAG...................2312.002.00-------------2.00--------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCG.....................................................1812.002.002.00---------------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCA...................................................2012.002.00----------------------------------------------1.00-------------------------------------------------------------------------------1.00---------------------------
........................CCCCAACAGCATCCGCGTCAAGATCG..................................................................................................................................2612.002.00------------------------------------------------------------------------------------------------------------------------1.00------------------1.00--------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTAT...............................................2512.0043.00----1.00---------------------------------------------1.00-------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAG..................................................2012.002.00--------------------------------1.00---------------------------------------------------------------------------------1.00---------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGC.................................................2312.002.00----------------------------------1.00-------------------------------------------1.00---------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCCA....................................................201.000.001.00---------------------------------------------------------------------------------------------------------------------------------------------------------
...CCCCGCCGGCCGCCGGGC...............................................................................................................................................................181.000.00---1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.......................................................................CGGGCCCGGCGGGGAGGGT..........................................................................................191.000.00--------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
................CGCGCCAACCCCAACAGCATCCGCGT..........................................................................................................................................2611.001.00---------------------------------------------------------------------------------------1.00------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCACTT................................................2411.0015.00-----------------------------------------------------------------------------------------------------------------------------1.00----------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATAA................................................2411.0015.00----------------------------------------------------------------------------------------------1.00-----------------------------------------------------------
...........................................................................CCCGGCGGGGAGGGGCCGC......................................................................................191.000.00-------------------------------------------------------1.00--------------------------------------------------------------------------------------------------
........................................................................GGGCCCGGCGGGGAGGGC..........................................................................................181.000.00--------1.00-------------------------------------------------------------------------------------------------------------------------------------------------
...............................AGCATCCGCGTCAAGATCG..................................................................................................................................1911.001.00----------------------------------------------------------------------------------------------------------------------------------------------1.00-----------
...........................................................................CCCGGCGGGGAGGGGCTC.......................................................................................1811.001.00---------------------------------------------------1.00------------------------------------------------------------------------------------------------------
..........................................................................GCCCGGCGGGGAGGGT..........................................................................................161.000.00---------------------------------1.00------------------------------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAGTTT...............................................2311.002.00----------------------------------------------------------1.00-----------------------------------------------------------------------------------------------
.........................................................................................................CGGTCCTGACGCTTCTCTCCCGCAGA.................................................261.000.00------------1.00---------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................GGCGGGCCCGGCGGGGGCGG...........................................................................................201.000.00---------------------------------------------------------------------------------------------------------------------1.00------------------------------------
..............................................................................................................................................................GAGCAACATGATGGCGGCCAC.2111.001.00------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCC...................................................2111.009.00----------------------------------------------------------------------------------1.00-----------------------------------------------------------------------
..............................................ATCGGTCAGCCCGCGGGCAGGC................................................................................................................2211.001.00-----------------------------------------------------------------------------------------------------------------------1.00----------------------------------
.......................................................................................................................................................ACCTCCAGAGCAACATGA...........1811.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGATT...............................................2511.0043.00-----------------------------------1.00----------------------------------------------------------------------------------------------------------------------
........................CCCCAACAGCATCCGCGTCAAGATC...................................................................................................................................2511.001.00--------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCT...................................................2111.009.00----------------------------1.00-----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAGCAACA..............2811.001.00-----1.00----------------------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................GGTCCTGACGCTTCTCTCCCGCAGA.................................................251.000.00--------------------------------------------------------------------------------------------------------------------------------1.00-------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGTAAT..............................................2611.0043.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------------------
.........................................................................GGCCCGGCGGGGAGGTGG.........................................................................................181.000.00------------------------------------1.00---------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAGAT................................................2311.001.00--------------------------------------------------------------------------------------------------------------------------------------------------1.00-------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGAT................................................2411.0043.00--------------------------------------------------------------1.00-------------------------------------------------------------------------------------------
........................................................CCGCGGGCAGGCAGGCG...........................................................................................................1711.001.00--------------------1.00-------------------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................GGCTTCGCGCGGTACCTCCAGAGCAACAT.............2911.001.00------------------------------1.00---------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................CTGACTTCGGCTTCGCGCGGTACC..........................2411.001.00-----1.00----------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................GGCCGGCGCCGGTCCGGCT.................................................................191.000.00----------------------------------------------------------------------1.00-----------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGTAG..................................................2211.0022.001.00---------------------------------------------------------------------------------------------------------------------------------------------------------
.......................ACCCCAACAGCATCCGCGTCA........................................................................................................................................2111.001.00------------------------------------------------------------------------------------------1.00---------------------------------------------------------------
..........................................................................GCCCGGCGGGGAGGGTGG........................................................................................181.000.00---------------------------------1.00------------------------------------------------------------------------------------------------------------------------
.........................................................................GGCCCGGCGGGGAGGTG..........................................................................................171.000.00---------------------------1.00------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATA.................................................2311.0015.00-----------------------------1.00----------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAGAA................................................2411.0043.00-------------------------------------------------1.00--------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCAAT.................................................2311.0015.00-----1.00----------------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAT..................................................2111.002.00---1.00------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................CGGTCCTGACGCTTCTCTCCCGCAGAA................................................271.000.00--------------------------------------------1.00-------------------------------------------------------------------------------------------------------------
..............................................................................................................................................TCGCGCGGTACCTCCAGAGCAACATGATGG........3011.001.00-------------------------------------------------------------------1.00--------------------------------------------------------------------------------------
.AACCCCGCCGGCCGCCGCGCC..............................................................................................................................................................2111.001.00-------------------------------------------------------------------------1.00--------------------------------------------------------------------------------
.................................................................................................................................................CGCGGTACCTCCAGAGC..................1711.001.00-------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................GCTCCGGGGCCGGCGCCGGTCCTGAC.................................................................2611.001.00------------------------------------------------------1.00---------------------------------------------------------------------------------------------------
..............................................................................................................CTGACGCTTCTCTCCCGCAGG.................................................2111.002.00-------------------------------------------------------------------------------------------------------------1.00--------------------------------------------
...........................................................................CCCGGCGGGGAGGGGCTCC......................................................................................1911.001.00---------------1.00------------------------------------------------------------------------------------------------------------------------------------------
.............................................................................................................CCTGACGCTTCTCTCCCGCAG..................................................2111.001.00-----------------1.00----------------------------------------------------------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCATTT................................................2411.0015.00-------1.00--------------------------------------------------------------------------------------------------------------------------------------------------
......................................................................................GGGGCTCCGGGGCCGCCGG...........................................................................191.000.00----------------------------------------------------------------------------------------------------1.00-----------------------------------------------------
.........................CCCAACAGCATCCGC............................................................................................................................................1511.001.00-----------------------------------------------------------------1.00----------------------------------------------------------------------------------------
............................................................................................................TCCTGACGCTTCTCTCCCGCCG..................................................2211.009.00--------------------------------------------------------------------------------------------------1.00-------------------------------------------------------
.........................................................................GGCCCGGCGGGGAGGG...........................................................................................1650.600.60--0.20------------------------------0.20------------------------------------------------------------------------------------------------------------------0.20-----
................................................................AGGCAGGCGGGCCCGG....................................................................................................1620.500.50---------------------------------------------------------------------------------------------------------------------------------------------------0.50------
.................................................................................................................................................CGCGGTACCTCCAGA....................1520.500.50---0.50------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................CGCGGGCAGGCAGGC............................................................................................................1570.140.14-----------------------------------------------------------------------------------------------------------------------------------------------------0.14----

Antisense strand
CAACCCCGCCGGCCGCCGCGCCAACCCCAACAGCATCCGCGTCAAGATCGGTCAGCCCGCGGGCAGGCAGGCGGGCCCGGCGGGGAGGGGCTCCGGGGCCGGCGCCGGTCCTGACGCTTCTCTCCCGCAGCTGACTTCGGCTTCGCGCGGTACCTCCAGAGCAACATGATGGCGGCCACA
.....................................................................((....))..((((((((..((..((((((((....))))))))..))..))).)))))....................................................
...................................................................68............................................................130................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR040037(GSM532922)
G243T. (cervix)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029131(GSM416760)
MCF7. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR029130(GSM416759)
DLD2. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
TAX577738(Rovira)
total RNA. (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR037937(GSM510475)
293cand2. (cell line)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR390723(GSM850202)
total small RNA. (cell line)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR037934(GSM510472)
293cand4_rep3. (cell line)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR040010(GSM532895)
G529N. (cervix)
SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577743(Rovira)
total RNA. (breast)
TAX577580(Rovira)
total RNA. (breast)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR207117(GSM721079)
Whole cell RNA. (cell line)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)
SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)
SRR040028(GSM532913)
G026N. (cervix)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR189783SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191612(GSM715722)
65genomic small RNA (size selected RNA from t. (breast)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR191459(GSM715569)
32genomic small RNA (size selected RNA from t. (breast)
SRR191400(GSM715510)
37genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)
SRR191629(GSM715739)
5genomic small RNA (size selected RNA from to. (breast)
SRR189785SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR037931(GSM510469)
293GFP. (cell line)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR363675(GSM830252)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
TAX577739(Rovira)
total RNA. (breast)
GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)
TAX577741(Rovira)
total RNA. (breast)
GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)
TAX577590(Rovira)
total RNA. (breast)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191415(GSM715525)
33genomic small RNA (size selected RNA from t. (breast)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
TAX577579(Rovira)
total RNA. (breast)
GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)
SRR189786SRR040032(GSM532917)
G603N. (cervix)
SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)
SRR191443(GSM715553)
108genomic small RNA (size selected RNA from . (breast)
GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR191460(GSM715570)
33genomic small RNA (size selected RNA from t. (breast)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)
SRR444053(SRX128901)
Sample 13cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)
TAX577589(Rovira)
total RNA. (breast)
....CGCGGCGGCCGGCGGG................................................................................................................................................................ 1694.114.11---2.67----------1.330.11------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................GGCGGGCCCGGCGGGCCCC............................................................................................ 192.000.00---2.00------------------------------------------------------------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCTGA.............................................................................................................................................................. 181.000.00--------------1.00-------------------------------------------------------------------------------------------------------------------------------------------
.................................................................CCCCGCCGGGCCCGCCTGCC............................................................................................... 2011.001.00-------------------------------------------------------------------------------------------1.00--------------------------------------------------------------
....CCCGCCGGCCGCCGCGCGG............................................................................................................................................................. 190.440.00---0.11----------------------------0.22-----------------------------------------------------------------------------------------------------------------------0.11-
...CGCGGCGGCCGGCGGGG................................................................................................................................................................ 1770.430.43---0.14----------0.29-------------------------------------------------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGTG.............................................................................................................................................................. 180.330.00--------------0.33-------------------------------------------------------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGCGGG............................................................................................................................................................ 200.220.00--0.11---------------------------------------------------------------------------------------------------------------------------------------------------0.11---
....CCCGCCGGCCGCCGCGT............................................................................................................................................................... 170.220.00----------------0.11-----------------------------------------0.11-----------------------------------------------------------------------------------------------
....CCCGCCGGCCGCCGCGCGGT............................................................................................................................................................ 200.110.00-------------------------------------------------------------------------------------------------------------------------------------------------------0.11--
....CCCGCCGGCCGCCGCGAGC............................................................................................................................................................. 190.110.00---------------------------------------------------------------------------------------------------------------------------------------------------------0.11