ID: uc001uja.1_intron_8_0_chr12_132239045_f.5p
GENE: SFSWAP(9)
chr12:132238995-132239244+


(15)
CELL-LINE 		(1)
CERVIX 		(1)
HEART 		(1)
HELA 		(4)
LIVER 		(1)
OTHER 		(3)
SKIN 		(1)
TESTES

Sense strand
AGGAACGGCCTGAAGTTCGAGACCAGTGTTCGTGCCAAGAATGATCAAAGGTCAGAAGAAGAATTTTATATGTTAGGTATATGGCATTTGGGGGTTTCGTTTAGCCTTTTTTTAAAAAAATGTAGGTACAGAATTAATTTTTTTATATATTTTTAAGCCTTTTCTTGGCTCAAATGTCTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGAT
...................................................................................................................(((((((((.....((((.....))))...))))))))).((((.......))))................................................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCCCC.............................................319.000.007.002.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTCGAG......................................................234.000.003.001.00---------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCCAG.............................................314.000.002.002.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTCCCC.................................................284.000.002.002.00---------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTTCCAG............................................323.000.002.00----------1.00-----------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTCCCC................................................293.000.003.00----------------------------
.....CGGCCTGAAGTTCGACGC...................................................................................................................................................................................................................................183.000.00----3.00------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTGGG.................................................283.000.003.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTGCC.................................................283.000.002.001.00---------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCAGC.............................................313.000.001.001.001.00--------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTCGAG................................................292.000.00-2.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTCGAG.....................................................242.000.001.001.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTCGG......................................................232.000.00-2.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTCCCC..................................................272.000.001.001.00---------------------------
.......................................................................................................................ATGTAGGTACAGAATGAGC................................................................................................................192.000.00-----2.00-----------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTTCCCC............................................322.000.001.001.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTTTTCCC..............................................312.000.002.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTCGGG...................................................261.000.001.00----------------------------
............................................................................................................................................................................AATGTCTTTTTTTTTTTTTTTTTTTCGAG.................................................291.000.00---1.00-------------------------
...........GAAGTTCGAGACCAGTGTTCGTG........................................................................................................................................................................................................................2311.001.00-----------------1.00-----------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTGGC.................................................281.000.001.00----------------------------
.....................................................................................................................................................................................................................................GCTGGAGTGCAGTGGCGCGATA221.000.00--------------------1.00--------
................................................................................................................................................................................................................................CCCAGGCTGGAGTGCAGTGGCGCGAGAC281.000.00--------1.00--------------------
.....................................................................................................................................................................................TTTTTTTTTTTTTTTTTTTTTGAGATGGCTG......................................311.000.00-1.00---------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCGC..............................................301.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTAGG..................................................271.000.00-----------------------1.00-----
.........CTGAAGTTCGAGACCAGTGTTCGTGC.......................................................................................................................................................................................................................2611.001.00-------------1.00---------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTTTCCGG..............................................311.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTCCCC......................................................231.000.001.00----------------------------
.................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTTTTTGAGCGC..........................................311.000.001.00----------------------------
...AACGGCCTGAAGTTCGAGACCAG................................................................................................................................................................................................................................2311.001.00---------------------1.00-------
......................................GAATGATCAAAGGTCAAG..................................................................................................................................................................................................181.000.00----------1.00------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCCAT.................................................271.000.001.00----------------------------
...............................................................................................................................................................................GTCTTTTTTTTTTTTTTTTTTTCGC..................................................251.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCGGG.............................................311.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTTCCAT............................................321.000.00--1.00--------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCACT.............................................311.000.001.00----------------------------
................................................................................ATGGCATTTGGGGGTTTCGT......................................................................................................................................................2011.001.00------------------1.00----------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTTGGTGT...........................................331.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTCGG.................................................281.000.001.00----------------------------
....ACGGCCTGAAGTTCGAGACCAGTGT.............................................................................................................................................................................................................................2511.001.00----------------------1.00------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTCTCC...................................................261.000.001.00----------------------------
............................................................................................................................................................................AATGTCTTTTTTTTTGAA............................................................181.000.001.00----------------------------
............................TTCGTGCCAAGAATGATCAAAG........................................................................................................................................................................................................2211.001.00----------------1.00------------
.................CGAGACCAGTGTTCGTGC.......................................................................................................................................................................................................................1811.001.00-------------------------1.00---
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTTGTTTT...........................................331.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTTAC.................................................281.000.00-1.00---------------------------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTTTTTGAGCGGG.........................................331.000.00-1.00---------------------------
.....................................................................ATGTTAGGTATATGGTATA..................................................................................................................................................................191.000.00-------1.00---------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTTAGC................................................291.000.001.00----------------------------
..GAACGGCCTGAAGTTCGAGACC..................................................................................................................................................................................................................................2211.001.00--------------1.00--------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTCTGG...................................................261.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCTCC.............................................311.000.001.00----------------------------
.............................................................................................................................................................................................................................TCACCCAGGCTGGAGTGCAGTGGCGCGGCGC311.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTCTTG..................................................271.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCTGC.............................................311.000.001.00----------------------------
............................................................................................................................................................................AATGTCTTTTTTTTTTTTTTTTTTTTTTTGGG..............................................321.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTGGGG................................................291.000.001.00----------------------------
............................................................................................................................................................................AATGTCTTTTTTTTTTTTTTTTTTTTTCAA................................................301.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTTTCGAG..............................................311.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCTAG.............................................311.000.001.00----------------------------
...........................................................................................................................................................................AAATGTCTTTTTTTTTTTTTTTTTTCT....................................................271.000.00-1.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTCGG....................................................251.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCCTT.............................................311.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCCAC.............................................311.000.001.00----------------------------
........................................................................................................................................ATTTTTTTATATATTTTTTTG.............................................................................................211.000.00--1.00--------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTGTT.................................................281.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTTTTTCC..............................................311.000.00--1.00--------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCTGC.................................................271.000.00-1.00---------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTCCGG.................................................281.000.001.00----------------------------
............................................................................................................................................................................AATGTCTTTTTTTTTTTTTTTTTCTGG...................................................271.000.00-1.00---------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCAC..................................................261.000.001.00----------------------------
.....................................................................................................................................................................................................................................GCTGGAGTGCAGTGGCGCGAA211.000.00---------------1.00-------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTCCA..................................................271.000.001.00----------------------------
............................................................................................................................................................................AATGTCTTTTTTTTTTTTTTTTTCGAG...................................................271.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTCCC.................................................281.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTTTTCC...............................................301.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTTCGGG............................................321.000.001.00----------------------------
......................................................................................................................................................................................................................TGCTCTGTCACCCAGGCTGGAGTGCAGGGGA.....311.000.001.00----------------------------
............................................................................................................................................................................AATGTCTTTTTTTTTTTTTTCTGC......................................................241.000.00-1.00---------------------------
...................AGACCAGTGTTCGTGCCAAGA..................................................................................................................................................................................................................2111.001.00------------------------1.00----
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTCGGC.....................................................241.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTCCCG.................................................271.000.001.00----------------------------
..............................................................................................................................................................................TGTCTTTTTTTTTTTTTTTTTTTTTTTCAGG.............................................311.000.001.00----------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTTTCCCT................................................291.000.001.00----------------------------
.............................................................................TATATGGCATTTGGGGGTT..........................................................................................................................................................1911.001.00---1.00-------------------------
.............................................................................................................................................................................ATGTCTTTTTTTTTTTTTTTTTTCGG...................................................261.000.00-1.00---------------------------
.................................GCCAAGAATGATCAAAG........................................................................................................................................................................................................1720.500.50----------------------------0.50
........................................................................................................................................ATTTTTTTATATATTTTTA...............................................................................................1990.330.33---0.33-------------------------

Antisense strand
AGGAACGGCCTGAAGTTCGAGACCAGTGTTCGTGCCAAGAATGATCAAAGGTCAGAAGAAGAATTTTATATGTTAGGTATATGGCATTTGGGGGTTTCGTTTAGCCTTTTTTTAAAAAAATGTAGGTACAGAATTAATTTTTTTATATATTTTTAAGCCTTTTCTTGGCTCAAATGTCTTTTTTTTTTTTTTTTTTTTTTTTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGCGAT
...................................................................................................................(((((((((.....((((.....))))...))))))))).((((.......))))................................................................................
..................................................................................................................115..................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR040029(GSM532914)
G026T. (cervix)		SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037943(GSM510481)
293DcrTN. (cell line)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR189782GSM956925PazD5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189786SRR037934(GSM510472)
293cand4_rep3. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
................................................................................................................TAAAAAAATGTAGGTATTC....................................................................................................................... 191.000.00---1.00-------------------------
..............................................................................................................................................................................................................................CACCCAGGCTGGAGTGCAGTGGCGCGATGGC 311.000.00-1.00---------------------------
.......................................................AAGAAGAATTTTATAATG................................................................................................................................................................................. 181.000.00-------------------1.00---------
........................................................................................................................................................................................................TTGAGATGGAGTCTTGCCAAG............................. 211.000.00--------------------------1.00--
.....................................................ATATAAAATTCTTCTTCT................................................................................................................................................................................... 1820.500.50---------------------------0.50-