ID: uc001uhg.3_intron_3_0_chr12_126451889_r.3p
GENE: (2)
chr12:126451839-126452088-


(9)
CELL-LINE
(1)
CERVIX
(1)
OTHER
(1)
SKIN

Sense strand
ATTACTATATTTTGTAAATGGAAATACCACTACTAAAAACGGAATGCTATGAATAAATGATGTCTTTTTTCCCCAAAGTTGATATACCAGAGCAATGCGAAAATAATAAAAGCCAGATATTTTGTGGCACTTATCTCGGGGTAAAGGCTGCAGCCGCAAGCACCACCGGCAATCATTCTTTTTTTTTTTTTTTTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATATCCTGACC
..................................................................................................(((((.((.(((((...(((....((..((..(((((....)))))..))..))((((..........)))).)))...))))).)).)))))...........................................................
..................................................................................83..............................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATT.................................................2817.000.0012.004.001.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAAAG................................................2911.000.004.006.00-1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTAGG...................................................269.000.003.006.00------------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATTAG...............................................277.000.001.005.001.00-----------
.................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTATTAG...............................................267.000.004.003.00------------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATTG................................................286.000.00-2.001.002.001.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATTTG...............................................306.000.005.001.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATTT..................................................275.000.002.001.00-1.00--1.00-------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTTTTG...........................................................225.000.002.003.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTAAAG.................................................295.000.001.003.001.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATTT................................................295.000.004.00--1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAG..................................................2754.404.401.401.600.600.80----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTATT....................................................264.000.001.003.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAAAAG...............................................304.000.003.001.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCCG...................................................264.000.001.001.001.001.00----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTGGTT..................................................284.000.00----4.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATTG................................................294.000.001.001.001.001.00----------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTTTTTTG.........................................................244.000.001.003.00------------
.......................................................................................CAGAGCAATGCGAAAAG..................................................................................................................................................174.000.00-------4.00------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATA...................................................264.000.002.001.001.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTATTG.....................................................253.000.002.001.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTCCG........................................................213.000.00-1.002.00-----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTAG...........................................................203.000.00---3.00----------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATCCC...............................................273.000.00---1.00--2.00-------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTCGG........................................................213.000.002.00-1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTATG..................................................283.000.002.001.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTCTAG...................................................273.000.00---1.001.001.00--------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTTTG............................................................213.000.001.002.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCATG...................................................263.000.00--1.001.00--1.00-------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATTAG...............................................283.000.001.00--2.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTTG.................................................283.000.00--3.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCGG...................................................262.000.00--1.001.00----------
............................................................................................................................................................................................TTTTTTTTTTAGTAGAGACGGGGCGC....................................262.000.00-----2.00--------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTAG..................................................2822.002.001.001.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTGG.................................................282.000.00--1.00-1.00---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTATG....................................................262.000.00-2.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTCTTG................................................302.000.00--1.001.00----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTCTG....................................................272.000.00--1.00-1.00---------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTCGAG..........................................................212.000.00-----2.00--------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCTTG.................................................292.000.00--2.00-----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTCTG......................................................252.000.00--2.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATAG................................................292.000.00-2.00------------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATTTC...............................................272.000.001.00---1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTCG.................................................282.000.00--1.001.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCGG....................................................252.000.00-1.001.00-----------
.............................................................................................................................................................................................TTTTTTTTTAGTAGAGACGGGGGTCC...................................262.000.00-----2.00--------
.............................................................................................................................................................................................TTTTTTTTTAGTAGAGACGGGGTTTTGCA................................292.000.00-----2.00--------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAAACG...............................................302.000.001.001.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTGTG...................................................272.000.001.00---1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCGG..................................................272.000.001.001.00------------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATTGG...............................................272.000.00-1.001.00-----------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATAAG...............................................272.000.00-1.00-1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCTA..................................................272.000.001.001.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATAT..................................................272.000.002.00-------------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTTCCG...................................................282.000.00---2.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCCTT.................................................282.000.001.00--1.00----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCCG..................................................282.000.001.001.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTAAAA.................................................292.000.001.00--1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAGG.................................................2851.204.400.400.80------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTCTTA....................................................261.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCTGG.................................................291.000.00-----1.00--------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCGT...................................................261.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTCTCC.......................................................231.000.00-----1.00--------
...............................................................................................................................................................................................TTTTTTTAGTAGAGACGGGGTTTGATC................................271.000.00-----1.00--------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATTAG...............................................291.000.00------1.00-------
...................................................................................................................................................................................................................TTTCACCGTGTTAGCCAGGATGGGGGT............271.000.00-----1.00--------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATAG..................................................271.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTATTT.......................................................231.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAAACC...............................................301.000.00--1.00-----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTGG.....................................................261.000.00----1.00---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTCCTG................................................301.000.00---1.00----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTCTTT................................................301.000.00---1.00----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTCG.......................................................241.000.00---1.00----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTCGG.........................................................221.000.00----1.00---------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTAAAA.........................................................221.000.00-1.00------------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATCAA...............................................271.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTCAAG....................................................261.000.00---1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATA.................................................281.000.001.00-------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATACT...............................................301.000.00-1.00------------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATCG................................................281.000.00-1.00------------
........................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTTAAAG........261.000.00---------1.00----
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTCCTT..................................................281.000.001.00-------------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATAT................................................281.000.00--1.00-----------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTTTTTTTTTCTTG...................................................301.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTGAGG.......................................................231.000.00-----1.00--------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATAAG...............................................291.000.00-1.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCATT..................................................271.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTAAAG................................................3091.000.780.560.44------------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTTTTTCAG................................................311.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTCCAT.......................................................221.000.00---1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCATG..................................................271.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCCCG..................................................271.000.00-1.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAAATT...............................................301.000.00-1.00------------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATCTC...............................................281.000.00------1.00-------
..........................................................................................................................................................................AATCATTCTTTTTTTTTG..............................................................181.000.001.00-------------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTTTAT...........................................................221.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCTAG.................................................291.000.001.00-------------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATTAC...............................................291.000.00--1.00-----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTTTTCC..................................................291.000.00---1.00----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTCCCG.......................................................231.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCAT...................................................261.000.00---1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAACCG...............................................301.000.00-1.00------------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTCAA......................................................251.000.00---1.00----------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATCAG...............................................281.000.00---1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCCAG.................................................281.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTATAG.................................................291.000.00------1.00-------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTAGTTTGG.............................................291.000.00----1.00---------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTAGAAGA..............................................291.000.00----1.00---------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTG..............................................................191.000.00---1.00----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTCTTG...................................................271.000.00--1.00-----------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATAG................................................281.000.00---1.00----------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATCCC...............................................281.000.00--1.00-----------
.................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTATACC...............................................261.000.00-----1.00--------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATCC................................................261.000.00---1.00----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTCG.........................................................211.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCCAT.................................................281.000.001.00-------------
.................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTATTAC...............................................261.000.001.00-------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTACG........................................................211.000.001.00-------------
.........................................................................................................................................................................CAATCATTCTTTTTTTCTG..............................................................191.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTAGTG...................................................271.000.00------1.00-------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTCCCG.........................................................221.000.00----1.00---------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTGTCC.......................................................241.000.00----1.00---------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATAAG...............................................281.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCTAG..................................................271.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTACAG..................................................271.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTCCTG..................................................281.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATATT...............................................301.000.00--1.00-----------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTAGTCTG..............................................301.000.00------1.00-------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTAATA.....................................................261.000.00-1.00------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCTA....................................................251.000.00-1.00------------
...........................................................................................................................................................................................................AGACGGGGTTTCACCGTGTAACC........................231.000.00----1.00---------
.......................................................................................................................................................................................................GTAGAGACGGGGTTTCAGCA...............................201.000.00--------1.00-----
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATTCG...............................................271.000.00---1.00----------
.............................................................................................................................................................AAGCACCACCGGCAATCGGTT........................................................................211.000.00----------1.00---
..........................................................................................................................................................................AATCATTCTTTTTTTTTTTTTTTAATA.....................................................271.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTCCG...................................................271.000.00-1.00------------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTTCCAT..................................................291.000.00------1.00-------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTATAAG...............................................301.000.00-1.00------------
.........................................................................................................................................................................................................AGAGACGGGGTTTCACCGGGTC...........................221.000.00----1.00---------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTAGAGC...............................................281.000.00----1.00---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTCTAG................................................301.000.00-----1.00--------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCCGG...................................................261.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTCTGG....................................................261.000.00----1.00---------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATTTA...............................................281.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTATTG..................................................281.000.00------1.00-------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTCG............................................................191.000.00--1.00-----------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATTGC...............................................281.000.00----1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTAAAAA...............................................301.000.001.00-------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTAGG........................................................211.000.001.00-------------
.........................................................................................................................................................................................TTTTTTTTTTTTTAGTAGAGACGGGGGGCA...................................301.000.00----1.00---------
.......................................................................................CAGAGCAATGCGAAA....................................................................................................................................................1511.001.00-------1.00------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTCTCG...................................................261.000.00---1.00----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTCTCG.......................................................221.000.00--1.00-----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTTTTAAG.................................................301.000.00--1.00-----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTAAAT.........................................................221.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTAGTT.........................................................211.000.00----1.00---------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATGTT...............................................281.000.00------1.00-------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATACG...............................................271.000.00-1.00------------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATTTC...............................................291.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTACAG..................................................281.000.00---1.00----------
...............................................................................................................................................................................................TTTTTTTAGTAGAGACGGGGGC.....................................221.000.00-----1.00--------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTAAGG..................................................271.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTAGGG..................................................281.000.00----1.00---------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTAGTTCAG.............................................301.000.00-----1.00--------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTAT.......................................................241.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTATT...................................................271.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTCCT.................................................291.000.00----1.00---------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATATT...............................................291.000.00-1.00------------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTTATGG..................................................291.000.00------1.00-------
.......................................................................................CAGAGCAATGCGAAAACTG................................................................................................................................................191.000.00-------1.00------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTCGTG....................................................261.000.00----1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTATAG.......................................................221.000.001.00-------------
..........................................................................................................................................................................AATCATTCTTTTTTTTTTTTTTCA........................................................241.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTCGGG.................................................281.000.00------1.00-------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTATT.....................................................261.000.00----1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTACTT................................................291.000.00-1.00------------
...........................................................................................................................................................................................TTTTTTTTTTTAGTAGAGACGGGGCTCC...................................281.000.00----1.00---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCAG..................................................281.000.00---1.00----------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTAGTTGGG.............................................291.000.00----1.00---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCTA..................................................281.000.00------1.00-------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTCCAG..........................................................211.000.00--1.00-----------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTCTGG...................................................281.000.00----1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTATTA..................................................271.000.001.00-------------
...........................................................................................................................................................................................TTTTTTTTTTTAGTAGAGACGGGGCCTC...................................281.000.00-----1.00--------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTTTCCTG...................................................281.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTCGGC..................................................281.000.00----1.00---------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTAGTCCC..............................................281.000.00------1.00-------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATAAT...............................................291.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTAT.....................................................251.000.00------1.00-------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTACTG.......................................................221.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTATTG...................................................271.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTCTT.................................................291.000.00-1.00------------
..........................................................................................................................................................................AATCATTCTTTTTTTCTTG.............................................................191.000.00--1.00-----------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCGGG.................................................291.000.00----1.00---------
.........................................................................................................................................................................................TTTTTTTTTTTTTAGTAGAGACGGGAC......................................271.000.00-----1.00--------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTAGGGAC..............................................301.000.00-----1.00--------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTCGC....................................................261.000.00---1.00----------
.................................................................................................................................................................................CTTTTTTTTTTTTTTTTTTTTATCGG...............................................261.000.00-1.00------------
...........................................................................................................................................................................ATCATTCTTTTTTTTTTTTTTTCGA......................................................251.000.00----1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTCCCG.......................................................221.000.00--1.00-----------
................................................................................................................................................................................TCTTTTTTTTTTTTTTTTTTTTATCCT...............................................271.000.001.00-------------
..........................................................................................................................................................................AATCATTCTTTTTTTTTTTTATC.........................................................231.000.00---1.00----------
..........................................................................................................................................................................AATCATTCTTTTTTTTTTTTTTTTTTTTTA..................................................301.000.001.00-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTCGCT.....................................................251.000.00----1.00---------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATATG...............................................291.000.00------1.00-------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTAACC.....................................................251.000.00----1.00---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTCAAT.................................................291.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTATTT.................................................291.000.00---1.00----------
.....................................................................................................................................................................................................TAGTAGAGACGGGGTTTCAGCTC..............................231.000.00-----1.00--------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTATTA.....................................................251.000.001.00-------------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTATAA................................................281.000.001.00-------------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTAGGG................................................281.000.00----1.00---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTCGAG....................................................261.000.00----1.00---------
...........................................................................................................................................................................................TTTTTTTTTTTAGTAGAGAGCG.........................................221.000.00----1.00---------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTCTA...................................................261.000.001.00-------------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTTTACC.................................................281.000.00--1.00-----------
.............................................................................................................................................................................CATTCTTTTTTTTTTTTTTTTTTAACG..................................................271.000.00---1.00----------
...............................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTTTTATATG...............................................281.000.00-1.00------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTA...................................................2790.780.780.440.22--0.11---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTAGAC................................................3020.502.00----0.50---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTAGGGG...............................................3120.502.00----0.50---------
..............................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTTTTAGTAG...............................................2930.330.33----0.33---------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTACT.................................................2990.220.780.22-------------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTTTTTTTTTTT.....................................................2870.140.14-0.14------------
.........................................................................................................................................................................CAATCATTCTTTTTTTTTTTTTTTTTT......................................................2780.120.12-0.12------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTATT.................................................2990.110.780.11-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTATAG................................................3090.110.780.11-------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTAAAAG...............................................3190.110.78-0.11------------
............................................................................................................................................................................TCATTCTTTTTTTTTTTTTTTTTTTTAAAT................................................3090.110.78-0.11------------

Antisense strand
ATTACTATATTTTGTAAATGGAAATACCACTACTAAAAACGGAATGCTATGAATAAATGATGTCTTTTTTCCCCAAAGTTGATATACCAGAGCAATGCGAAAATAATAAAAGCCAGATATTTTGTGGCACTTATCTCGGGGTAAAGGCTGCAGCCGCAAGCACCACCGGCAATCATTCTTTTTTTTTTTTTTTTTTTTAGTAGAGACGGGGTTTCACCGTGTTAGCCAGGATGGTCTTGATATCCTGACC
..................................................................................................(((((.((.(((((...(((....((..((..(((((....)))))..))..))((((..........)))).)))...))))).)).)))))...........................................................
..................................................................................83..............................................................................................................195.....................................................
SizePerfect hitTotal NormPerfect NormSRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189784DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR040036(GSM532921)
G243N. (cervix)
SRR189785SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)
........................................................................................................................................................................................................................CCGTGTTAGCCAGGATGGTCTTAT.......... 241.000.00-------------1.00
....................................AAACGGAATGCTATGCT..................................................................................................................................................................................................... 171.000.00-------1.00------
..............................................................................................................................................................................................................CGGGGTTTCACCGTGTTAGCCAGGATGCCC.............. 301.000.00----1.00---------
........................................................................................................................................................................................................................CCGTGTTAGCCAGGAGGGG............... 191.000.00------------1.00-
.........................................................................................................................................................................................TTTTTTTTTTTTTAGTAGAGACGGGGTTTCTAG................................ 331.000.00-------1.00------
............................................................................................................................................................................................TTTTTTTTTTAGTAGAGACTAG........................................ 221.000.00-----------1.00--
...........................................................................................................................................................................................TTTTTTTTTTTAGTAGCTAG........................................... 201.000.00-------1.00------
.................................................................................................................................................................................................................................CCAGGATGGTCTTGATAC....... 181.000.00--------1.00-----