ID: uc001ufo.1_intron_9_0_chr12_124144132_f
GENE: GTF2H3(10)
chr12:124144082-124144391+


(1)
AGO2.ip
(2)
B-CELL
(2)
BRAIN
(3)
BREAST
(6)
CELL-LINE
(1)
CERVIX
(1)
HELA
(2)
LIVER
(5)
OTHER
(4)
SKIN

Sense strand
GACTGTACCTGAAGGTGCCTCAGATGCCTTCTCTTCTGCAGTATTTGCTGGTAAGGAGACAGCAGCGGCGACCCTGATGCCTGGAGGGAAGGATGACCTCTGTGTCCTGGGAAAGGAATGGAAGCAAGATGGCTGGTGCTAGTACTCAGGAGAAGGGAATAAATGGAGGCCTTGGAGTTCCAAGGCCTAGAAGGGTGGGCTTCATGTTATTTTTTTCCCATGTTTTAAATAAAAGTTTCTTTTGTTTGTTTGTTTTACAGTGGGTGTTTCTTCCCGATCAAGATCAGAGATCTCAGTTAATCCTCCCACC
.............................................................................................................................................(((....((.(((((((((((....(((((((((....))))))))).((((......))))...)))))))))))))......((((((((((...)))))))))).......)))....................................................
...........................................................................................................................................140.....................................................................................................................260................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038861(GSM458544)
MM466. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040043(GSM532928)
G428T. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337SRR189784SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189787SRR189785SRR189786
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTCCT....................................................258.000.004.004.00------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTCC.....................................................247.000.002.005.00------------------------
.......................................................................................................................................................................................................................................AAAGTTTCTTTTGTTTGTTTGCTT.......................................................245.000.004.001.00------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTCCTT...................................................263.000.001.002.00------------------------
.......................................................................................................................................................................................................................................AAAGTTTCTTTTGTTTGTTTGCTTT......................................................252.000.002.00-------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTGC....................................................252.000.001.001.00------------------------
........................................................................................................................................................................................................................................AAGTTTCTTTTGTTTGTTTGTTTC......................................................242.000.00-2.00------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTTG....................................................252.000.001.001.00------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTTTG...................................................262.000.002.00-------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTAACC..................................................271.000.001.00-------------------------
...........................................................................................................................................................................................................................................TTTCTTTTGTTTGTTTGTTTTACAG..................................................2511.001.00-------------1.00------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTCTCC.....................................................241.000.00-1.00------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTTTTG..................................................271.000.00-1.00------------------------
.......................................................................................................................................................................................................................................AAAGTTTCTTTTGTTTGTTTGCTC.......................................................241.000.001.00-------------------------
.............................................................................................................................................................................................................................................TCTTTTGTTTGTTTGTTTTCTGG..................................................231.000.00-1.00------------------------
.............................................................................................................................................................................................................................................TCTTTTGTTTGTTTGTTTTGTTC..................................................231.000.001.00-------------------------
...........................................................................................................................................................................................................................................TTTCTTTTGTTTGTTTGTTTCCTT...................................................241.000.00-1.00------------------------
.............................................................................................................................................................................................................................................TCTTTTGTTTGTTTGTTTCTCG...................................................221.000.001.00-------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGGCC.......................................................221.000.001.00-------------------------
.............................................................................................................................................................................................................................................TCTTTTGTTTGTTTGTTTTGTAG..................................................231.000.00-1.00------------------------
..........................................................................................................................................................................................................................................GTTTCTTTTGTTTGTTTGTTTATTT...................................................251.000.00-1.00------------------------
............................................................................................................................................................................................................................................TTCTTTTGTTTGTTTGTTTTCCCC..................................................241.000.00-1.00------------------------
....................................................................................................TGTGTCCTGGGAAAGGAATGGAAGCAAGATGGC.................................................................................................................................................................................3311.001.00----1.00---------------------
................................................................................................................................................CTCAGGAGAAGGGAATAAATGG................................................................................................................................................2211.001.00------------1.00-------------
.......................................................................................................................................................................................................................................AAAGTTTCTTTTGTTTGTTTTAC........................................................231.000.001.00-------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGCT........................................................211.000.001.00-------------------------
.............................................................................................................................................................................................................................................TCTTTTGTTTGTTTGTTTTAAGTA.................................................241.000.001.00-------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTTC....................................................251.000.001.00-------------------------
...........................................................................................................................................................................................................................................TTTCTTTTGTTTGTTTGTTTAGC....................................................231.000.00-1.00------------------------
.......................................................................................................................................................................................................................................AAAGTTTCTTTTGTTTGTTTGCT........................................................231.000.00-1.00------------------------
..........................................................................................................................AGCAAGATGGCTGGTAC...........................................................................................................................................................................171.000.00----------------1.00---------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTGAGA...................................................261.000.001.00-------------------------
.......................................................................................................................................................................................................................................AAAGTTTCTTTTGTTTGTTTGCTCT......................................................251.000.001.00-------------------------
...........................................................................................................................................................................................................................................TTTCTTTTGTTTGTTTGTTGGGA....................................................231.000.001.00-------------------------
........................................................................................................................................................................................................................................AAGTTTCTTTTGTTTGTTTGTTTTTG....................................................261.000.00-1.00------------------------
.............................................................................................................................................GTACTCAGGAGAAGGGAATA.....................................................................................................................................................2011.001.00---------1.00----------------
....................................................................................................................................................................................................................................................................................ATCAAGATCAGAGATCTCA...............1911.001.00--------------1.00-----------
............................................................................................................................................................................................................................................TTCTTTTGTTTGTTTGTTTTGTCC..................................................241.000.001.00-------------------------
........................................................................................................................................................................................................................................AAGTTTCTTTTGTTTGTTTTGTT.......................................................231.000.00-1.00------------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTCG.........................................................201.000.001.00-------------------------
.............................................................................................................................AAGATGGCTGGTGCTAGTACTCAGGAGAAGGG.........................................................................................................................................................3211.001.00---1.00----------------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTCTTG....................................................251.000.001.00-------------------------
...........................................................................................................................................................................................................................................TTTCTTTTGTTTGTTTGTTTCGGG...................................................241.000.00-1.00------------------------
........................................................................................................................................................................................................................................AAGTTTCTTTTGTTTGTTTGCTT.......................................................231.000.001.00-------------------------
..................................................................................................................................................CAGGAGAAGGGAATAAAATA................................................................................................................................................201.000.00-----------------1.00--------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTTGTT..................................................271.000.001.00-------------------------
........................................................................................................................................................................................................................................AAGTTTCTTTTGTTTGTTTGCT........................................................221.000.00-1.00------------------------
.....................AGATGCCTTCTCTTCTGTGTT............................................................................................................................................................................................................................................................................211.000.00-----------1.00--------------
.........................................................................................................................................................................................................................................AGTTTCTTTTGTTTGTTTGTTTTGAG...................................................261.000.001.00-------------------------
......................................................................................................................................................................................................................................AAAAGTTTCTTTTGTTACA.............................................................191.000.00---------------1.00----------
.....................................................................................................................................................................................................................................................................................TCAAGATCAGAGATCTCA...............1811.001.00-------1.00------------------
..........................................................................................................................................................................................................................................GTTTCTTTTGTTTGTTTGTTTCTG....................................................241.000.00-1.00------------------------
..............................................................................................................................................................................................................................................CTTTTGTTTGTTTGTTTTGGTC..................................................221.000.001.00-------------------------
......ACCTGAAGGTGCCTCAGATGCCTTCT......................................................................................................................................................................................................................................................................................2611.001.00-----1.00--------------------
............................................................................................................................................................................................................................................TTCTTTTGTTTGTTTGTTTCTCT...................................................231.000.00-1.00------------------------
...........................................................................................................................................................................................................................................TTTCTTTTGTTTGTTTGTTTTAC....................................................2321.001.001.00-------------------------
..........................................................................................................................................................................................................................................GTTTCTTTTGTTTGTCTGT.........................................................191.000.00--1.00-----------------------
..............................................................................................................................................................................................................................................................TTACAGTGGGTGTTT.........................................1570.140.14--0.14-----------------------

Antisense strand
GACTGTACCTGAAGGTGCCTCAGATGCCTTCTCTTCTGCAGTATTTGCTGGTAAGGAGACAGCAGCGGCGACCCTGATGCCTGGAGGGAAGGATGACCTCTGTGTCCTGGGAAAGGAATGGAAGCAAGATGGCTGGTGCTAGTACTCAGGAGAAGGGAATAAATGGAGGCCTTGGAGTTCCAAGGCCTAGAAGGGTGGGCTTCATGTTATTTTTTTCCCATGTTTTAAATAAAAGTTTCTTTTGTTTGTTTGTTTTACAGTGGGTGTTTCTTCCCGATCAAGATCAGAGATCTCAGTTAATCCTCCCACC
.............................................................................................................................................(((....((.(((((((((((....(((((((((....))))))))).((((......))))...)))))))))))))......((((((((((...)))))))))).......)))....................................................
...........................................................................................................................................140.....................................................................................................................260................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)
SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM359180(GSM359180)
hela_phil_smrna_cyto. (hela)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038861(GSM458544)
MM466. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
TAX577589(Rovira)
total RNA. (breast)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR040043(GSM532928)
G428T. (cervix)
TAX577738(Rovira)
total RNA. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR444043(SRX128891)
Sample 4cDNABarcode: AF-PP-339: ACG CTC TTC C. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR343337SRR189784SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
SRR189787SRR189785SRR189786
.....................................................................................................................................................GAGAAGGGAATAAATGTTGT............................................................................................................................................. 202.000.00--2.00-----------------------
......................................TACCAGCAAATACTG................................................................................................................................................................................................................................................................. 1561.171.17---------------------0.83-0.170.17-
.....................................................................................................................................................................................................................................................................GGGTGTTTCTTCCCGC................................. 161.000.00--------------------1.00-----
..................................................................................................................................................................................................................................................................................................TCTCAGTTAATCCTCCC... 171.000.00------1.00-------------------
................................................................................................CCTCTGTGTCCTGGGCTT.................................................................................................................................................................................................... 181.000.00----------1.00---------------
........................................................................................................TCCTGGGAAAGGAATGTAGC.......................................................................................................................................................................................... 201.000.00-------------------1.00------
.........TGAAGGTGCCTCAGAAT............................................................................................................................................................................................................................................................................................ 171.000.00------------------1.00-------
......................................................................................CAGAGGTCATCCTTCC................................................................................................................................................................................................................ 1640.500.50----------------------0.50---
......................................CAGTATTTGCTGGTAGCG.............................................................................................................................................................................................................................................................. 180.330.00-----------------------0.17-0.17