ID: uc001uds.1_intron_1_0_chr12_123461315_f
GENE: OGFOD2(2)
chr12:123461265-123461467+


(1)
AGO1.ip 		(2)
AGO2.ip 		(4)
B-CELL 		(2)
BREAST 		(12)
CELL-LINE 		(1)
HEART 		(2)
HELA 		(2)
LIVER 		(1)
OTHER 		(6)
SKIN 		(1)
XRN.ip

Sense strand
TCGCGAGTTCCTACCACCCGGCACGGCCTGAGGTCTACGACTCACTGCAGGTACCAGCCAGCCAGAGTGCTTGAAGGCCGGTACTGGAAAGAGGAGGTAGCATCCAGGGCTGGGGGTGCTGCCTGCCCCACAGCTGGTGTGTTTTGCTCCCAGGATGCAGCTCTGGCCCCCGAGTTCCTGGCCGTGACTGAGTACAGCGTGTC
............................................................................((((((..(((.....(((((((((((((........))))))))))).)))))..)))))).................................................................
........................................................................73..............................................................................153................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)
.........................................................................AAGGCCGGTACTGGAAAGAGGAGGTAGCACC...................................................................................................3110.000.008.00---2.00----------------------------
.........................................................................AAGGCCGGTACTGGAAAGAGGAGGTAGCATC...................................................................................................3116.006.005.00----------1.00---------------------
.........................................................................AAGGCCGGTACTGGAAAGAGGAGGTAGCATCC..................................................................................................3214.004.00-2.00--2.00----------------------------
.............................................................................CCGGTACTGGAAAGAGGAGGTAG.......................................................................................................2314.004.00---3.00--------------1.00--------------
.........................................................................AAGGCCGGTACTGGAAAGAGGAGGTAGCATT...................................................................................................313.000.002.001.00-------------------------------
.............................................................................CCGGTACTGGAAAGAGGAGGTAGCATA...................................................................................................2712.001.00-----2.00---------------------------
.......................................................................TGAAGGCCGGTACTGGAAAGA...............................................................................................................2112.002.00---------2.00-----------------------
..............................................................................CGGTACTGGAAAGAGGAGGTAG.......................................................................................................2212.002.00------1.00------------------1.00-------
.............................................................................CCGGTACTGGAAAGAGGAGGGAG.......................................................................................................232.000.00------------1.00----------------1.00---
.......................................................................................................................................................AGGATGCAGCTCTGGCA...................................171.000.00-------------1.00-------------------
..............................................................................................AGGTAGCATCCAGGGCTGGGGGTG.....................................................................................2411.001.00-------------------------------1.00-
.............................................................................CCGGTACTGGAAAGAGGAGGTAGCAT....................................................................................................2611.001.00--------1.00------------------------
..................CGGCACGGCCTGAGGTCTA......................................................................................................................................................................1911.001.00--------------------1.00------------
.............................................................................CCGGTACTGGAAAGAGGAG...........................................................................................................1911.001.00------1.00--------------------------
.............................................................................CCGGTACTGGAAAGAGGAGGTAGA......................................................................................................2411.004.00------1.00--------------------------
................................GTCTACGACTCACTGCAG.........................................................................................................................................................1811.001.00--------1.00------------------------
........................................................GCCAGCCAGAGTGCTTGTGAT..............................................................................................................................211.000.00-------1.00-------------------------
.......................................................................................................................................................AGGATGCAGCTCTGGCCCCCGAG.............................2311.001.00----------------------------1.00----
.........................................................................AAGGCCGGTACTGGAAAGAGGAGGTAGCAC....................................................................................................301.000.001.00--------------------------------
.........................................................................AAGGCCGGTACTGGAAAGAGGAGGTAGCATCT..................................................................................................3211.006.001.00--------------------------------
......................................................................TTGAAGGCCGGTACTGGAAAGAGGAGGTAGCAT....................................................................................................3311.001.00--1.00------------------------------
..........................................................................................................................................................ATGCAGCTCTGGCCCCCGAGTTCC.........................2411.001.00-------------------1.00-------------
...................................................................................CTGGAAAGAGGAGGTAGCA.....................................................................................................1911.001.00--1.00------------------------------
..................................................GTACCAGCCAGCCAGAGTGCTTGAAGGCCGGTA........................................................................................................................3311.001.00----------1.00----------------------
.......................................................................TGAAGGCCGGTACTGGAAAGAGGAGGTAGCAT....................................................................................................3211.001.00--1.00------------------------------
............................................................................GCCGGTACTGGAAAGAGGAGGTAGCATC...................................................................................................2811.001.00--------------1.00------------------
.............................................................................CCGGTACTGGAAAGAGGAGGTAT.......................................................................................................231.000.00---------------------------1.00-----
.........................................................................AAGGCCGGTACTGGAAAGAGGAGGTACCT.....................................................................................................291.000.001.00--------------------------------
.............................................................................CCGGTACTGGAAAGAGGAGGTAGT......................................................................................................2411.004.00------------------------1.00--------
.............................................................................CCGGTACTGGAAAGAGGAGGTAGC......................................................................................................2411.001.00---1.00-----------------------------
............ACCACCCGGCACGGCCTGAGGTCCACG....................................................................................................................................................................271.000.00-1.00-------------------------------
......................................................................................................................................TGGTGTGTTTTGCTCCCA...................................................1811.001.00-----------------1.00---------------
.............................................................................CCGGTACTGGAAAGAGGAGGTAGCATC...................................................................................................2711.001.00----------------1.00----------------
......................................................................TTGAAGGCCGGTACTGGAAAGAGGAGGTAGCA.....................................................................................................3211.001.00--1.00------------------------------
.........CCTACCACCCGGCACGGCC...............................................................................................................................................................................1911.001.00-----1.00---------------------------

Antisense strand
TCGCGAGTTCCTACCACCCGGCACGGCCTGAGGTCTACGACTCACTGCAGGTACCAGCCAGCCAGAGTGCTTGAAGGCCGGTACTGGAAAGAGGAGGTAGCATCCAGGGCTGGGGGTGCTGCCTGCCCCACAGCTGGTGTGTTTTGCTCCCAGGATGCAGCTCTGGCCCCCGAGTTCCTGGCCGTGACTGAGTACAGCGTGTC
............................................................................((((((..(((.....(((((((((((((........))))))))))).)))))..)))))).................................................................
........................................................................73..............................................................................153................................................
SizePerfect hitTotal NormPerfect NormSRR189786SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR189787SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR189784GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)
......................................................................................................................ACCAGCTGTGGGGCAGGCAG................................................................. 2011.001.00---------------1.00-----------------
...................................................................................................................................................................TGGCCCCCGAGTTCCTGGCCGTGACAA............. 271.000.00------------------------------1.00--
........GTAGACCTCAGGCCGTGCCGGGTGGTAGGA..................................................................................................................................................................... 3011.001.00-------1.00-------------------------
.....AGTTCCTACCACCCGGCGTG.................................................................................................................................................................................. 201.000.00--------------------------------1.00
.......................TGAGTCGTAGACCTCAGGCCG............................................................................................................................................................... 2111.001.00-----------------------1.00---------
................CTCAGGCCGTGCCGGG........................................................................................................................................................................... 1611.001.00----------------------1.00----------
............................................................................................................................................................................TACTCAGTCACGGCCAGGAACT......... 2211.001.00---------------------1.00-----------
................CCCGGCACGGCCTGAGGTCTACGACTCGG.............................................................................................................................................................. 291.000.00-1.00-------------------------------
..................................................................................................AGCATCCAGGGCTGGGGGCCC.................................................................................... 211.000.00--------------------------1.00------