ID: uc001ucv.2_intron_23_0_chr12_123055674_f.3p
GENE: (24)
chr12:123057284-123057533+


(1)
B-CELL
(1)
BRAIN
(11)
CELL-LINE
(3)
LIVER
(3)
OTHER
(2)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
AAAATATCTTTCAGATTCTGATCTATACTAATTTGGTTAAAATACTACAAAATTTAGAGCATAAGTTGGTTTAAAGTTGCAGGTTTCCTCTTACGTGCATAACCAGGGTTAATTCTTATTTTATCTGAAATAATTCTGATTCTATTTTTCTCTCATACTTTTATTTTATATCGTTAACAACTTTAACACTTTTGTTTTAGAAAGATTATCAGAACACAGAGGAAGTATGTCAGCTAAGGACTTTGGTAAA
.......................................................................................................((((((((.(((...........))).))))))))................................................................................................................
............................................................................................93........................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343334SRR189784SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................ATTCTATTTTTCTCTCATACTTTTATT.....................................................................................27119.0019.0014.005.00--------------------
..........................................................................................................................................ATTCTATTTTTCTCTCATACTTTTA.......................................................................................25113.0013.0011.002.00--------------------
.................................................................................................CATAACCAGGGTTAATTCTT.....................................................................................................................................20111.0011.00--7.00-4.00-----------------
..........................................................................................................................................ATTCTATTTTTCTCTCATAC............................................................................................2015.005.005.00---------------------
....................................................................................................................................................................................................................................GTCAGCTAAGGACTTTGGT...1914.004.00---4.00------------------
..........................................................................................................................................................................................................................GAGGAAGTATGTCAGCTAAG............2013.003.00---------2.001.00-----------
.............................................................................................................................................CTATTTTTCTCTCATACG...........................................................................................183.000.00-----2.001.00---------------
..........................................................................................................................................ATTCTATTTTTCTCTCATACTTTTATTTTATATC..............................................................................3412.002.001.001.00--------------------
........................................................................................................................................................................................................AAAGATTATCAGAACACAGA..............................2012.002.00--------2.00-------------
.........................................................................................................................................................................................................................AGAGGAAGTATGTCAGCTAAGG...........2211.001.00------------------1.00---
.....................................................................................................................................................................................................................................TCAGCTAAGGACTTTGGT...1811.001.00---1.00------------------
.........................................................................................................................................................CATACTTTTATTTTATATCG.............................................................................2011.001.001.00---------------------
................................................................................................................................................TTTTTCTCTCATACTTGAAG......................................................................................201.000.00------1.00---------------
.....................................................................................................................................................................................................................ACACAGAGGAAGTATGTCAGCTAAG............2511.001.00-------1.00--------------
..........................................................................AGTTGCAGGTTTCCTCTTACGTGC........................................................................................................................................................2411.001.00---------------1.00------
............................................................................................................................................TCTATTTTTCTCTCATACTTTTA.......................................................................................2311.001.001.00---------------------
..........................................................................................................................................ATTCTATTTTTCTCTCATACTTTCATT.....................................................................................271.000.001.00---------------------
.....................................................................................................................................TTCTGATTCTATTTTTATAG.................................................................................................201.000.00------------1.00---------
.......................................................................................................................................................................................................................................AGCTAAGGACTTTGGTATGTC211.000.00-------------1.00--------
................................................................................................................................................................................................................TCAGAACACAGAGGAGGC........................181.000.00----------------1.00-----
......................................................................................................................................................................................................................CACAGAGGAAGTATGTCAGCTAA.............2311.001.00-----------------1.00----
................................................................................................................................................................................................................TCAGAACACAGAGGAGGCA.......................191.000.00-------------------1.00--
.............................................................................................................................................CTATTTTTCTCTCATACTTTTATT.....................................................................................2411.001.001.00---------------------
...........................................................................................................................................TTCTATTTTTCTCTCATACTTTTA.......................................................................................2411.001.00-1.00--------------------
..........................................................................................................................................ATTCTATTTTTCTCTCATACTTTTATTTTACATC..............................................................................341.000.00-1.00--------------------
..................................................................................................................................................................................................................AGAACACAGAGGAAGTATGTC...................2111.001.00-----------1.00----------
...............................................................................................................................................ATTTTTCTCTCATACTTTTATTTTATATCG.............................................................................3011.001.001.00---------------------
......................................................................................................................................................................................................................CACAGAGGAAGTATGTCAGCT...............2111.001.00-------1.00--------------
.........................................................................................................................................................................................................AAGATTATCAGAACACAGAGGAAGTTT......................271.000.00--------------1.00-------
............................................................................................................................................TCTATTTTTCTCTCATACTTTTATTTTATATCG.............................................................................3311.001.00-1.00--------------------
...........................................................................................................................................TTCTATTTTTCTCTCATAC............................................................................................1920.500.500.50---------------------
..............................................................................................................................................................................TAACAACTTTAACACT............................................................1650.200.20---------------------0.20
......................................................................................................................................................................................................................................CAGCTAAGGACTTTGG....1650.200.20--------------------0.20-

Antisense strand
AAAATATCTTTCAGATTCTGATCTATACTAATTTGGTTAAAATACTACAAAATTTAGAGCATAAGTTGGTTTAAAGTTGCAGGTTTCCTCTTACGTGCATAACCAGGGTTAATTCTTATTTTATCTGAAATAATTCTGATTCTATTTTTCTCTCATACTTTTATTTTATATCGTTAACAACTTTAACACTTTTGTTTTAGAAAGATTATCAGAACACAGAGGAAGTATGTCAGCTAAGGACTTTGGTAAA
.......................................................................................................((((((((.(((...........))).))))))))................................................................................................................
............................................................................................93........................................................................167.................................................................................
SizePerfect hitTotal NormPerfect NormSRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037940(GSM510478)
293cand5_rep2. (cell line)
SRR343334SRR189784SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)
GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)