ID: uc001txo.3
GENE: GCN1L1(54)
chr12:120569088-120569337-


(2)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
AGO2.ip 		(2)
B-CELL 		(5)
BREAST 		(16)
CELL-LINE 		(1)
CERVIX 		(1)
FIBROBLAST 		(4)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(1)
OTHER 		(7)
SKIN 		(1)
XRN.ip

Sense strand
GCTTTCCTTACTTTCCTTAATGTGCCACTTTGGGGAGCTTCTGCCAAGATAGCAGGGAGGTCCATGTGAATGTGGCCTGGAGTTTTCCTTGTGCTCTGGGTCAGCACACTGGTCTCCAGCGGGGTGGGCCCATGGGCCTCATGGGTGCTGGGGACATGCTGTAAAATACCGGTTGATCCCAGTCGTGTCCTTCCACCCAGCGGACGTGTCCGGCATTGACTGGATGGTTCGGCACGGGCGGAGCCTGGCA
.............................................................................................................................................((((((..((((((((((((...(((....))).....))).))))))))).))))))...................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038857(GSM458540)
D20. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
............................................................................................................................................ATGGGTGCTGGGGACATGCTGT........................................................................................22115.0015.00-6.00--2.00-2.002.00-------1.00------------------1.00-1.00----
...........................................................................................................................................CATGGGTGCTGGGGACATGCTGT........................................................................................2319.009.002.00--4.00-------------1.00-----1.00-------------1.00---
............................................................................................................................................ATGGGTGCTGGGGACATGCTG.........................................................................................2115.005.005.00----------------------------------------
............................................................................................................................................ATGGGTGCTGGGGACATGCTGTA.......................................................................................2314.004.00-3.00---------------------------------1.00-----
.............................................................................................................................................TGGGTGCTGGGGACATGCTGT........................................................................................2113.003.00----1.00--1.00-------------------1.00-------------
............................................................................................................................................................................................................................TGGATGGTTCGGCACGGGCGGAA.......2313.001.003.00----------------------------------------
..................................................................................................................................................................................CCAGTCGTGTCCTTCCACCCAG..................................................2212.002.00--1.00--1.00-----------------------------------
.....................................................................................................................................................................................................................CATTGACTGGATGGTTCGGCACGGGCGGAG.......3012.002.00-----2.00-----------------------------------
..................................................................................................................................................................................CCAGTCGTGTCCTTCCACCCAGA.................................................2312.002.00--1.00-----1.00--------------------------------
...........................................................................................................................................CATGGGTGCTGGGGACATGC...........................................................................................2012.002.00-2.00---------------------------------------
.....................................................................................................................................................................................................................................CGGCACGGGCGGAGCGC....172.000.00----1.00--------------------1.00---------------
...................................................GCAGGGAGGTCCATGTGAATT..................................................................................................................................................................................211.000.00--1.00--------------------------------------
...................................................GCAGGGAGGTCCATGTACAG...................................................................................................................................................................................201.000.00--1.00--------------------------------------
............................................................................................................................................ATGGGTGCTGGGGACATGCTGTTGT.....................................................................................2511.0015.00------1.00----------------------------------
.....................................................................................................................................................................................................................CATTGACTGGATGGTTCGGC.................2011.001.00------------------1.00----------------------
............................................................................................................................................................................................................................TGGATGGTTCGGCACGGGCGGA........2211.001.001.00----------------------------------------
...............................................................................................................................................................................................................................ATGGTTCGGCACGGGCGGAGCCTGGCAAC291.000.00---------1.00-------------------------------
............................................................................................................................................ATGGGTGCTGGGGACATGCTGGA.......................................................................................2311.005.00----1.00------------------------------------
............................................................................................................................................ATGGGTGCTGGGGACATGAAA.........................................................................................211.000.00--------1.00--------------------------------
............................................................................................................................................................................................................................TGGATGGTTCGGCACGGGCGGAT.......2311.001.00--------------------------1.00--------------
............................................................................................................................................ATGGGTGCTGGGGACATGCTGCA.......................................................................................2311.005.00----------------------1.00------------------
.............................................................................................................................................................................................................................GGATGGTTCGGCACGGGCGG.........2011.001.00-----------1.00-----------------------------
...................................................................................................................................................................................CAGTCGTGTCCTTCCACCCAGA.................................................2211.001.00---------------------------------1.00-------
....................................................................................................................................................................................AGTCGTGTCCTTCCACCCAGCGGACGTGT.........................................2911.001.00--------------1.00--------------------------
............................................................................................................................................................................................................................TGGATGGTTCGGCACGGGCGG.........2111.001.00----------1.00------------------------------
...................................................GCAGGGAGGTCCATGTGAAGT..................................................................................................................................................................................211.000.00--1.00--------------------------------------
.......................................................................................................................................................................................................................TTGACTGGATGGTTCGGCACGGGC...........2411.001.00-----------1.00-----------------------------
.............................................AAGATAGCAGGGAGGGGTC..........................................................................................................................................................................................191.000.00---------1.00-------------------------------
................................................................................................................................................................................................................................TGGTTCGGCACGGGCGGAGCCCGGC.251.000.00---------1.00-------------------------------
..................................................................................................................TCCAGCGGGGTGGGCTT.......................................................................................................................171.000.00------------1.00----------------------------
........................................................................................................................................................................................................................TGACTGGATGGTTCGGCACGGGCGGAGCCCGG..321.000.00------------1.00----------------------------
............................................................................................................................................ATGGGTGCTGGGGACATGCTAT........................................................................................221.000.00------------------------------1.00----------
............................................................................................................................................ATGGGTGCTGGGGACATGCTGTAA......................................................................................2411.001.00------------------------1.00----------------
...........................................................................................................................................................................................................ACGTGTCCGGCATTGACTG............................1911.001.00----------1.00------------------------------
.............................................................................................................................................TGGGTGCTGGGGACATGCTGTA.......................................................................................2211.001.00-----1.00-----------------------------------
...................................................................................................................................................................................CAGTCGTGTCCTTCCACCCAG..................................................2111.001.00--------------------1.00--------------------
.....................................................................................................................................................................................GTCGTGTCCTTCCACCCAG..................................................1911.001.00---1.00-------------------------------------
.............................................................................................................................................TGGGTGCTGGGGACATGCTG.........................................................................................2011.001.00---------------------1.00-------------------
............................................................................................................................................ATGGGTGCTGGGGACATGCTGTAT......................................................................................2411.004.00----------------1.00------------------------
..........................................................................................................................................TCATGGGTGCTGGGGACATGCTG.........................................................................................2311.001.00------1.00----------------------------------
.......................................................................................................................................................................................................................TTGACTGGATGGTTCGGCACGGGCGGAGCC.....3011.001.00-------------1.00---------------------------
............................................................................................................................TGGGCCCATGGGCCTCATGGGTGCTG....................................................................................................2611.001.00----------------------------1.00------------
...........................................................................................................................................CATGGGTGCTGGGGACATGCT..........................................................................................2111.001.00--------1.00--------------------------------
...............................................................................................................................................................................................................................ATGGTTCGGCACGGGCGG.........1811.001.00-------------------------------1.00---------
..................................................................................................................................................................................................................CGGCATTGACTGGATGGTTCGGCACGGG............2811.001.00--------------------------------1.00--------
.............................................................................................................................................TGGGTGCTGGGGACATGCT..........................................................................................1911.001.00-------------------1.00---------------------
...........................................................................................................................................CATGGGTGCTGGGGACATG............................................................................................1911.001.00--1.00--------------------------------------
.........................................................................................................................................................................................................GGACGTGTCCGGCAT..................................1520.500.50---------------------------------------0.50-

Antisense strand
GCTTTCCTTACTTTCCTTAATGTGCCACTTTGGGGAGCTTCTGCCAAGATAGCAGGGAGGTCCATGTGAATGTGGCCTGGAGTTTTCCTTGTGCTCTGGGTCAGCACACTGGTCTCCAGCGGGGTGGGCCCATGGGCCTCATGGGTGCTGGGGACATGCTGTAAAATACCGGTTGATCCCAGTCGTGTCCTTCCACCCAGCGGACGTGTCCGGCATTGACTGGATGGTTCGGCACGGGCGGAGCCTGGCA
.............................................................................................................................................((((((..((((((((((((...(((....))).....))).))))))))).))))))...................................................
.......................................................................................................................................136.............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR189782SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191614(GSM715724)
92genomic small RNA (size selected RNA from t. (breast)		SRR037936(GSM510474)
293cand1. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR189787SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR343332(GSM796035)
"KSHV (HHV8), EBV (HHV-4)". (cell line)		GSM532883(GSM532883)
G871N. (cervix)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM359176(GSM359176)
hela_chip_smrna_pure. (hela)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR038857(GSM458540)
D20. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		TAX577745(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)
...........................................CCAAGATAGCAGGGATTTT............................................................................................................................................................................................ 191.000.00--------------------------------------1.00--
.....................................................................................................................................................................................GTCGTGTCCTTCCACGATC.................................................. 191.000.00-----------------------------1.00-----------
......................................................................................................................ATGGGCCCACCCCGC..................................................................................................................... 1520.500.50----------------------------------------0.50