ID: uc001txo.2_intron_0_0_chr12_120565779_r.3p
GENE: (57)
chr12:120565729-120565978-


(1)
AGO1.ip 		(1)
AGO1.ip OTHER.mut 		(2)
B-CELL 		(14)
BRAIN 		(6)
BREAST 		(14)
CELL-LINE 		(1)
FIBROBLAST 		(2)
HEART 		(1)
HELA 		(1)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(8)
SKIN 		(1)
TESTES 		(4)
UTERUS

Sense strand
TAAGAAAAAGGGAAAAATAGAAAAGCATGATGAGTGTTTTCATTGGCTTTCCCTGGATCCATCTGATTCCCTTATTTTGCCAGAGTCCACCTCAGTGTCTCTAGTTCTGGGGTTAACATTCATTTTTGTCTTTCTCCAATTGGAGAACGTGGCAGCCGTATGTTCTGACTATGTTTCCTCCTGCTCATCCTTCCCCACAGTCCCTCTCCAAGATCCTGGATGTGGCCAGTTTGGAGGTGCTGAACGAGGT
..............................................................................((.((((..(((....))).)))).))..(((((...(((........)))....)))))................................................................................................................
....................................................................69...................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
..................................................................................................................AACATTCATTTTTGTCGGTG....................................................................................................................2030.000.002.001.006.003.001.00-2.00-3.001.00---1.001.002.001.00-1.00---1.00-------1.00--------1.00---1.00--1.00---------
..................................................................................................................AACATTCATTTTTGTCGGT.....................................................................................................................1923.000.00-2.00-3.003.003.00--1.00-3.001.001.00---1.00-----1.001.001.001.00-----------------------1.00------
..................................................................................................................AACATTCATTTTTGTCGGTT....................................................................................................................2013.000.00-1.001.00---2.00-1.001.001.001.002.001.00----------------------------------1.00-1.00-----
..................................................................................................................AACATTCATTTTTGTCGGGG....................................................................................................................207.000.00-----1.001.00--1.00-----1.00-----2.00----------------1.00-----------------
..................................................................................................................AACATTCATTTTTGTCTGTG....................................................................................................................204.000.00--3.00---1.00-------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTGTTT...................................................................................................................214.000.004.00-------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCGG......................................................................................................................183.000.00---1.00---------------------1.00-----------1.00------------------
..................................................................................................................AACATTCATTTTTGTCGTTG....................................................................................................................203.000.00-------------1.00----1.00-------------------------1.00-----------
..................................................................................................................AACATTCATTTTTGTCTGT.....................................................................................................................193.000.00----1.00-------1.001.00------------------------------------------
..................................................................................................................AACATTCATTTTTGTCGGC.....................................................................................................................193.000.00-1.00---1.00----1.00---------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTGTTG...................................................................................................................213.000.001.001.00---------------------1.00--------------------------------
..................................................................................................................AACATTCATTTTTGTCTTTTTTT.................................................................................................................233.000.003.00-------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTTTTTGT.................................................................................................................233.000.002.00-------------------------------1.00-----------------------
..................................................................................................................AACATTCATTTTTGTCTTTTTT..................................................................................................................223.000.002.00------------------1.00------------------------------------
.......................................................................................................................................................................................................................................TGGAGGTGCTGAACGA...1622.002.00--------------------------0.50-0.50------------------------0.500.50-
..................................................................................................................AACATTCATTTTTGTCGGTA....................................................................................................................202.000.00-----------1.00--1.00-----------------------------------------
..................................................................................................................AACATTCATTTTTGTCGTT.....................................................................................................................192.000.00----1.00-------------------1.00-------------------------------
......................................................................................................................................................................................................................CCTGGATGTGGCCAGTTTGGAGGTGCTGAACGAG..3412.002.00-------2.00------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTGTT....................................................................................................................202.000.002.00-------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCGGCT....................................................................................................................201.000.00-1.00------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTTGTT...................................................................................................................211.000.00--------------1.00-----------------------------------------
.......................................................................................................................................................................................................................................TGGAGGTGCTGAACGAGGC191.000.00---------------------------1.00----------------------------
..........................................................................................................................................ATTGGAGAACGTGGCC................................................................................................161.000.00--------------------1.00-----------------------------------
........AGGGAAAAATAGAAAAGCATGATG..........................................................................................................................................................................................................................2411.001.00-----------------------------------------------1.00--------
..................................................................................................................AACATTCATTTTTGTCGTTA....................................................................................................................201.000.001.00-------------------------------------------------------
.........................................................................................................................................................................................................CCCTCTCCAAGATCCTGGATGT...........................2211.001.00------------------------------------1.00-------------------
..................................................................................................................AACATTCATTTTTGTCTTTGGGT.................................................................................................................231.000.00---1.00----------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTAT.....................................................................................................................191.000.00-1.00------------------------------------------------------
...........................................................................................................................................................................................................CTCTCCAAGATCCTGGATGTGGC........................2311.001.00---------------------------------1.00----------------------
..................................................................................................................AACATTCATTTTTGTCTGTGT...................................................................................................................211.000.00-1.00------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCG.......................................................................................................................171.000.00-1.00------------------------------------------------------
........................................................................................................................................................................................................................TGGATGTGGCCAGTTTGGAGGTGCTGAACGA...3111.001.001.00-------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTGTGG...................................................................................................................211.000.00----1.00---------------------------------------------------
........................................................................................................................................................................................................................................GGAGGTGCTGAACGA...1521.001.00---------------------------0.500.50---------------------------
.......................................................................................................................................................................................................................................TGGAGGTGCTGAACGAG..1711.001.00-----------------------------1.00--------------------------
..................................................................................................................AACATTCATTTTTGTCTTTGT...................................................................................................................211.000.001.00-------------------------------------------------------
.............................................................................................................GGGTTAACATTCATTGTT...........................................................................................................................181.000.00---------1.00----------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTTTTTTA.................................................................................................................231.000.00----------------------------------------1.00---------------
..................................................................................................................AACATTCATTTTTGTCTGTTA...................................................................................................................211.000.001.00-------------------------------------------------------
..........................................................................................................................................................................................................................GATGTGGCCAGTTTGGAGGTGC..........2211.001.00---------------------------------------------1.00----------
..................................................................................................................AACATTCATTTTTGTCGACC....................................................................................................................201.000.00-1.00------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTTGGGG..................................................................................................................221.000.00-1.00------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCGGGT....................................................................................................................201.000.00----------------------------------1.00---------------------
...............................................................TGATTCCCTTATTTTGCCAGAGTCCAC................................................................................................................................................................2711.001.00-----------------1.00--------------------------------------
................................................................................................................................................................................................................................GCCAGTTTGGAGGTGCTGAACGAGG.2511.001.00------------------------------------------1.00-------------
..................................................................................................................AACATTCATTTTTGTCTTCCT...................................................................................................................211.000.00----------------1.00---------------------------------------
..................................................................................................................AACATTCATTTTTGTCTTTGTGT.................................................................................................................231.000.00------------------1.00-------------------------------------
..................................................................................................................AACATTCATTTTTGTCCGTA....................................................................................................................201.000.00--1.00-----------------------------------------------------
.........................................................................ATTTTGCCAGAGTCCCGC...............................................................................................................................................................181.000.00--------------------1.00-----------------------------------
..................................................................................................................AACATTCATTTTTGTCTGTTC...................................................................................................................211.000.00-------------------1.00------------------------------------
..................................................................................................................AACATTCATTTTTGTCTGA.....................................................................................................................191.000.00-----------1.00--------------------------------------------
.......................................................................................................................................CCAATTGGAGAACGTGGCAGC..............................................................................................2111.001.00--------------------------1.00-----------------------------
........................................................................TATTTTGCCAGAGTCCACCTCAGTGT........................................................................................................................................................2611.001.00-----------------1.00--------------------------------------
..................................................................................................................AACATTCATTTTTGTCTTTTGGT.................................................................................................................231.000.001.00-------------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTGGG....................................................................................................................201.000.00---------1.00----------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTGGGG...................................................................................................................211.000.00-----------------------------------------1.00--------------
.................................................................................................TCTCTAGTTCTGGGGTTAACATTCATTTT............................................................................................................................2911.001.00-----------------1.00--------------------------------------
..................................................................................................................AACATTCATTTTTGTCGGTC....................................................................................................................201.000.00-----1.00--------------------------------------------------
..................................................................................................................AACATTCATTTTTGTCTTTTTA..................................................................................................................221.000.001.00-------------------------------------------------------
...........GAAAAATAGAAAAGCATG.............................................................................................................................................................................................................................1820.500.50----------------------------------------------------0.50---

Antisense strand
TAAGAAAAAGGGAAAAATAGAAAAGCATGATGAGTGTTTTCATTGGCTTTCCCTGGATCCATCTGATTCCCTTATTTTGCCAGAGTCCACCTCAGTGTCTCTAGTTCTGGGGTTAACATTCATTTTTGTCTTTCTCCAATTGGAGAACGTGGCAGCCGTATGTTCTGACTATGTTTCCTCCTGCTCATCCTTCCCCACAGTCCCTCTCCAAGATCCTGGATGTGGCCAGTTTGGAGGTGCTGAACGAGGT
..............................................................................((.((((..(((....))).)))).))..(((((...(((........)))....)))))................................................................................................................
....................................................................69...................................................................138..............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577453(Rovira)
total RNA. (breast)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR553576(SRX182782)
source: Testis. (testes)		SRR029131(GSM416760)
MCF7. (cell line)		SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577742(Rovira)
total RNA. (breast)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029129(GSM416758)
SW480. (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		TAX577739(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
..............................................................CTGAGGTGGACTCTGGCAAAATAAGGGAATCAG........................................................................................................................................................... 3313.003.00-------3.00------------------------------------------------
.......................................................................................................................................................................................CTCATCCTTCCCCACGAAG................................................ 191.000.00-----------------------------------1.00--------------------
...........................................................................TTTGCCAGAGTCCACCGGC............................................................................................................................................................ 191.000.00---------------------------------------------------1.00----
..........................................................................................................................................................CATAGTCAGAACATACGGC............................................................................. 1911.001.00-------------------------------1.00------------------------
..................................................................................................................................................................................................TGGAGAGGGACTGTGG........................................ 1660.330.33-------------------------------------------------------0.33