| (1) BRAIN | (6) BREAST | (23) CELL-LINE | (1) CERVIX | (14) HELA | (2) OTHER | (3) SKIN |
| GAGCTGATTTTGGCTGTTCACAGCGTTCATCTGATGGGATACGTGCATCGGTAAGTGAGACTCTGGTAGCATTTTTATGCTGAGGATTTTCCTGTGTCGCATAAGAGTTCCTGCATGGAAATGAGTGGATGAGTGATTTCAAGATCAAGATAACGCCCCATCCAGTTTTTAGCCAGTCTACCAATAACTGGCTGAAAGCAAACTTTCCAAGATGGAGGACATTTCAGCTTGCTTATCCAGCAGTGCAATA .......................................................................(((((((((..((((..(((.((((...)))).))).))))))))))))).((.((((((.(((...((........))...)))..)))))).)).(((((((((.........)))))))))....................................................... .......................................................................72.........................................................................................................................195..................................................... | Size | Perfect hit | Total Norm | Perfect Norm | GSM359178(GSM359178) hela_nucl_t. (hela) | GSM359177(GSM359177) hela_nucl_a. (hela) | GSM359203(GSM359203) hepg2_untreated_b. (cell line) | GSM359173(GSM359173) hela_10_1. (hela) | GSM359176(GSM359176) hela_chip_smrna_pure. (hela) | GSM359202(GSM359202) hepg2_untreated_a. (cell line) | GSM359174(GSM359174) hela_5_1. (hela) | GSM359175(GSM359175) hela_5_pct. (hela) | GSM359192(GSM359192) HepG2_3pM_6. (cell line) | GSM359190(GSM359190) HepG2_3pM_4. (cell line) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | GSM359193(GSM359193) HepG2_3pM_7. (cell line) | GSM359191(GSM359191) HepG2_3pM_5. (cell line) | GSM359181(GSM359181) hela_phil_smrna_nuc. (hela) | GSM359180(GSM359180) hela_phil_smrna_cyto. (hela) | GSM359204(GSM359204) HepG2_nucl_low. (cell line) | GSM359206(GSM359206) HepG2_tot_low. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | GSM359188(GSM359188) HepG2_2pM_2. (cell line) | GSM359186(GSM359186) hepg2_untrtd. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | GSM359187(GSM359187) HepG2_2pM_1. (cell line) | GSM359205(GSM359205) HepG2_nucl_up. (cell line) | GSM359189(GSM359189) HepG2_2pm_3. (cell line) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR029124(GSM416753) HeLa. (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR330888(SRX091726) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR191590(GSM715700) 48genomic small RNA (size selected RNA from t. (breast) | SRR191599(GSM715709) 89genomic small RNA (size selected RNA from t. (breast) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR191557(GSM715667) 57genomic small RNA (size selected RNA from t. (breast) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR191565(GSM715675) 92genomic small RNA (size selected RNA from t. (breast) | GSM359207(GSM359207) HepG2_tot_up. (cell line) | SRR189782 | SRR040008(GSM532893) G727N. (cervix) | TAX577739(Rovira) total RNA. (breast) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR191551(GSM715661) 32genomic small RNA (size selected RNA from t. (breast) | GSM359194(GSM359194) HepG2_TAP_AFFY_depl. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | GSM359198(GSM359198) hepg2_cip_tap_pasr_a. (cell line) | GSM956925Paz8D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ........................................................................................................................................................................TTAGCCAGTCTACCAATAACTGGCTG........................................................ | 26 | 1 | 232.00 | 232.00 | 148.00 | 27.00 | - | 15.00 | 13.00 | - | 12.00 | 11.00 | - | - | - | - | - | 3.00 | 2.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TTAGCCAGTCTACCAATAACTGGCTGAAAGCAAA................................................ | 34 | 1 | 46.00 | 46.00 | - | - | 16.00 | - | - | 11.00 | - | - | 7.00 | 3.00 | - | 3.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - |
| .........................................................................................................................................................................TAGCCAGTCTACCAATAACTGGCTGA....................................................... | 26 | 1 | 44.00 | 44.00 | 26.00 | 8.00 | - | 4.00 | 1.00 | - | 1.00 | 2.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TTAGCCAGTCTACCAATAACTGG........................................................... | 23 | 1 | 32.00 | 32.00 | 21.00 | 2.00 | - | - | 1.00 | - | - | - | 1.00 | 1.00 | - | - | 1.00 | - | 2.00 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .........................................................................................................................................................................TAGCCAGTCTACCAATAACTGGCTGAAAGCAAA................................................ | 33 | 1 | 29.00 | 29.00 | - | - | 5.00 | - | - | 3.00 | - | - | 1.00 | 3.00 | - | 2.00 | 3.00 | - | - | 3.00 | 4.00 | - | 1.00 | - | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TTTAGCCAGTCTACCAATAACTGG........................................................... | 24 | 1 | 9.00 | 9.00 | 6.00 | - | - | - | 1.00 | - | 1.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................TTAGCCAGTCTACCAATAACTGGCTGAAAGCAAACTTTCCAAGATGGAGGACATTT.......................... | 56 | 1 | 8.00 | 8.00 | - | - | - | - | - | - | - | - | - | - | 6.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................TAGCCAGTCTACCAATAACTGG........................................................... | 22 | 1 | 4.00 | 4.00 | - | - | - | - | 2.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................AACTTTCCAAGATGGAGGACATTT.......................... | 24 | 1 | 4.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................................CTTTCCAAGATGGAGGACATTT.......................... | 22 | 1 | 3.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .........................................CGTGCATCGGTAAGTGAGA.............................................................................................................................................................................................. | 19 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 |
| .......................................................................................................................................................................................................AAACTTTCCAAGATGGAGGA............................... | 20 | 1 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................ATGCTGAGGATTTTCGAGC........................................................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..GCTGATTTTGGCTGTTCACAGCGTT............................................................................................................................................................................................................................... | 25 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................TGGCTGAAAGCAAACTTTCCAAGATGGAGGACATT........................... | 35 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - |
| .........................................................................................................................................................................................................................GACATTTCAGCTTGCTTGTA............. | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................................................................................................................TCCAAGATGGAGGACATTT.......................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................CTGGCTGAAAGCAAACTTTCCAAGATGGAGGAC.............................. | 33 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ........................................................................................................................................................................................................AACTTTCCAAGATGGAGGA............................... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .........................................................................................................................................................................TAGCCAGTCTACCAATAACTGGCTGAAAGCAA................................................. | 32 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .......................................................................................................................................................................TTTAGCCAGTCTACCAATAACTGGCTGAAAGCAAACTTTCCAAGATGGAGGACATTTC......................... | 58 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ............................................................................................................................................................................................TGGCTGAAAGCAAACTTTCCAAGATGGAGGA............................... | 31 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .............................................................................................................................................................................................GGCTGAAAGCAAACTTTCCAAGATGGAGGACATTT.......................... | 35 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ........................................................................................................................................................................TTAGCCAGTCTACCAATAACTG............................................................ | 22 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - |
| ...........................................................................................................................................................................................................TTTCCAAGATGGAGGACATTT.......................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................AGCCAGTCTACCAATAACTGG........................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| GAGCTGATTTTGGCTGTTCACAGCGTTCATCTGATGGGATACGTGCATCGGTAAGTGAGACTCTGGTAGCATTTTTATGCTGAGGATTTTCCTGTGTCGCATAAGAGTTCCTGCATGGAAATGAGTGGATGAGTGATTTCAAGATCAAGATAACGCCCCATCCAGTTTTTAGCCAGTCTACCAATAACTGGCTGAAAGCAAACTTTCCAAGATGGAGGACATTTCAGCTTGCTTATCCAGCAGTGCAATA .......................................................................(((((((((..((((..(((.((((...)))).))).))))))))))))).((.((((((.(((...((........))...)))..)))))).)).(((((((((.........)))))))))....................................................... .......................................................................72.........................................................................................................................195..................................................... | Size | Perfect hit | Total Norm | Perfect Norm | GSM359178(GSM359178) hela_nucl_t. (hela) | GSM359177(GSM359177) hela_nucl_a. (hela) | GSM359203(GSM359203) hepg2_untreated_b. (cell line) | GSM359173(GSM359173) hela_10_1. (hela) | GSM359176(GSM359176) hela_chip_smrna_pure. (hela) | GSM359202(GSM359202) hepg2_untreated_a. (cell line) | GSM359174(GSM359174) hela_5_1. (hela) | GSM359175(GSM359175) hela_5_pct. (hela) | GSM359192(GSM359192) HepG2_3pM_6. (cell line) | GSM359190(GSM359190) HepG2_3pM_4. (cell line) | DRR001487(DRX001041) "Hela long nuclear cell fraction, LNA(+)". (hela) | GSM359193(GSM359193) HepG2_3pM_7. (cell line) | GSM359191(GSM359191) HepG2_3pM_5. (cell line) | GSM359181(GSM359181) hela_phil_smrna_nuc. (hela) | GSM359180(GSM359180) hela_phil_smrna_cyto. (hela) | GSM359204(GSM359204) HepG2_nucl_low. (cell line) | GSM359206(GSM359206) HepG2_tot_low. (cell line) | SRR029131(GSM416760) MCF7. (cell line) | GSM359188(GSM359188) HepG2_2pM_2. (cell line) | GSM359186(GSM359186) hepg2_untrtd. (cell line) | SRR037935(GSM510473) 293cand3. (cell line) | GSM359187(GSM359187) HepG2_2pM_1. (cell line) | GSM359205(GSM359205) HepG2_nucl_up. (cell line) | GSM359189(GSM359189) HepG2_2pm_3. (cell line) | DRR001482(DRX001036) "Hela long total cell fraction, control". (hela) | DRR001488(DRX001042) "Hela short nuclear cell fraction, LNA(+)". (hela) | SRR029124(GSM416753) HeLa. (hela) | SRR037936(GSM510474) 293cand1. (cell line) | SRR207110(GSM721072) Nuclear RNA. (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR330888(SRX091726) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR191590(GSM715700) 48genomic small RNA (size selected RNA from t. (breast) | SRR191599(GSM715709) 89genomic small RNA (size selected RNA from t. (breast) | SRR039190(GSM494809) PBMCs were isolated by ficoll gradient from t. (blood) | DRR000556(DRX000314) "THP-1 whole cell RNA, after 3 day treatment . (cell line) | SRR191557(GSM715667) 57genomic small RNA (size selected RNA from t. (breast) | DRR001484(DRX001038) "Hela long nuclear cell fraction, control". (hela) | GSM450609(GSM450609) miRNA sequencing raw reads from post-mortem s. (brain) | SRR553573(SRX182779) source: Cerebellum. (Cerebellum) | SRR191565(GSM715675) 92genomic small RNA (size selected RNA from t. (breast) | GSM359207(GSM359207) HepG2_tot_up. (cell line) | SRR189782 | SRR040008(GSM532893) G727N. (cervix) | TAX577739(Rovira) total RNA. (breast) | SRR330884(SRX091722) tissue: skin psoriatic uninvolveddisease stat. (skin) | SRR191551(GSM715661) 32genomic small RNA (size selected RNA from t. (breast) | GSM359194(GSM359194) HepG2_TAP_AFFY_depl. (cell line) | DRR001489(DRX001043) "Hela short nuclear cell fraction, control". (hela) | GSM359198(GSM359198) hepg2_cip_tap_pasr_a. (cell line) | GSM956925Paz8D5(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | SRR330895(SRX091733) tissue: skin psoriatic uninvolveddisease stat. (skin) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ...............................................................................................................................................................................................................................TCAGCTTGCTTATCCAGCT........ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................CGCCCCATCCAGTTTGGG............................................................................... | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................................................................TAAGAGTTCCTGCATGG.................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| ...........................................................................................................................................................................................CTGGCTGAAAGCAAACGAG............................................ | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| ................................................................................................................................................TCAAGATAACGCCCCGGGC....................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................CATAAGAGTTCCTGCAG...................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |