uc001tvt.1_intron_0_0_chr12_115110108

ACCTAGAGATTTCTGAGTGTTGACTTCTCTCCTGCCCCCACCTATCTCCCCCCCCAAAAAAAAAAACACAACAACAACAACAACAGAACATACCAGGGATTCATGGCTTGCCCAATGTTGGAGGGGGAGAAGAGAGGAGAGGGATGAGATAAGCTCCTCCCACCCGGCTGACTCGCTGTGTGTCTCTTTTCTCACCCCAGGGCCTGGCCATGTCCCCTTTCGGAAGCCTGTTCCCTTACCCCTACACGTA
................................................................................(((((...((..(((........)))..)).....)))))..(((((((((((((((...((((.(((.....))).))))...((((......))))....))))))))))).))))....................................................
..................................................51...................................................................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR037940(GSM510478)
293cand5_rep2. (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)

SRR189782

SRR037937(GSM510475)
293cand2. (cell line)

SRR037939(GSM510477)
293cand5_rep1. (cell line)

SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR029128(GSM416757)
H520. (cell line)

TAX577741(Rovira)
total RNA. (breast)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

SRR040011(GSM532896)
G529T. (cervix)

GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)

SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR040036(GSM532921)
G243N. (cervix)

SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)

TAX577740(Rovira)
total RNA. (breast)

SRR040023(GSM532908)
G575T. (cervix)

SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)

SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)

SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)

SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)

SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)

TAX577742(Rovira)
total RNA. (breast)

SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

TAX577744(Rovira)
total RNA. (breast)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR040035(GSM532920)
G001T. (cervix)

SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)

DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)

..................................................................................................................................................................................TGTGTCTCTTTTCTCACCCCAGT.................................................

21.00

4.00

9.00

4.00

2.00

1.00

.....................................................................................................................TTGGAGGGGGAGAAGAGAGGAGAGGGATGAGATAAGCTCCTCCCACCCGGCTGACTCGCTGTGTGTCTCTTTT............................................................

6.00

4.00

1.00

2.00

1.00

3.00

4.00

3.00

....................................................CCCAAAAAAAAAAACACTTT..................................................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................................................CGCTGTGTGTCTCTTTTCTCACCCCAGA.................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACCTAC..............................................................................................................................................................................

1.00

0.00

1.00

...................................................CCCCAAAAAAAAAAA........................................................................................................................................................................................

1.00

................................................................................................................................................................................TGTGTGTCTCTTTTCTCACCCC....................................................

1.00

....................................................................................................................................................ATAAGCTCCTCCCACTCC....................................................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACA.................................................................................................................................................................................

1.00

......................................................................................................................................................AAGCTCCTCCCACCCTTT..................................................................................

1.00

0.00

1.00

......................................................................................................................................AGGAGAGGGATGAGATAAG.................................................................................................

1.00

.....................................................CCAAAAAAAAAAACACAGGCT................................................................................................................................................................................

1.00

0.00

1.00

4.00

1.00

.........................................................................................................................................................................................................................TTTCGGAAGCCTGTTCCC...............

1.00

...........................................................................................................................................................................................................................TCGGAAGCCTGTTCCCTTACCC.........

1.00

..............................................................................................................................GAGAAGAGAGGAGAGGGGCCA.......................................................................................................

1.00

0.00

1.00

....................................................CCCAAAAAAAAAAACACCACC.................................................................................................................................................................................

1.00

0.00

1.00

......................................................................ACAACAACAACAACAGAACTCTG.............................................................................................................................................................

1.00

0.00

1.00

.........................................................................................................................AGGGGGAGAAGAGAGGAGAGGGA..........................................................................................................

1.00

..................................................................................................................ATGTTGGAGGGGGAGAAGAGAGGAGAGGGATGAGATAAGCTCCTCCCACCCGGCTGACTCGCTGTGTGTCTCTTTTCTC.........................................................

1.00

...............................................................................................................................AGAAGAGAGGAGAGGCTCT........................................................................................................

1.00

0.00

1.00

.........................................................................................................................AGGGGGAGAAGAGAGGATCG.............................................................................................................

1.00

0.00

1.00

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR037940(GSM510478)
293cand5_rep2. (cell line)

SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)

DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)

SRR189782

SRR037937(GSM510475)
293cand2. (cell line)

SRR037939(GSM510477)
293cand5_rep1. (cell line)

SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)

DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR029128(GSM416757)
H520. (cell line)

TAX577741(Rovira)
total RNA. (breast)

SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)

SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)

SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)

SRR040011(GSM532896)
G529T. (cervix)

GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)

SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)

DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)

SRR040036(GSM532921)
G243N. (cervix)

SRR191565(GSM715675)
92genomic small RNA (size selected RNA from t. (breast)

TAX577740(Rovira)
total RNA. (breast)

SRR040023(GSM532908)
G575T. (cervix)

SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)

SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)

SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)

SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)

SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)

TAX577742(Rovira)
total RNA. (breast)

SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)

DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)

SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)

SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)

TAX577744(Rovira)
total RNA. (breast)

SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)

SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)

SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)

SRR040035(GSM532920)
G001T. (cervix)

SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)

DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)

.....................................................CCAAAAAAAAAAACACAATAG................................................................................................................................................................................

4.00

0.00

1.00

3.00

.......................................................AAAAAAAAAAACACAACAACAATTGG.........................................................................................................................................................................

3.00

0.00

1.00

2.00

.....................................................TTGTTGTGTTTTTTTTTTTGG................................................................................................................................................................................

2.00

1.50

0.50

............................................................AAAAAACACAACAACACGG...........................................................................................................................................................................

2.00

0.00

2.00

.......................................................AAAAAAAAAAACACAACAACGG.............................................................................................................................................................................

2.00

0.00

2.00

.........................................................AAAAAAAAACACAACAAGGT.............................................................................................................................................................................

2.00

0.00

2.00

.........................................................AAAAAAAAACACAACAAGG..............................................................................................................................................................................

2.00

0.00

2.00

.......................................................AAAAAAAAAAACACAACAACAATGG..........................................................................................................................................................................

2.00

0.00

1.00

........................................................................................................................GAGGGGGAGAAGAGAGTATT..............................................................................................................

2.00

0.00

2.00

..........................................................AAAAAAAACACAACAACACCGG..........................................................................................................................................................................

2.00

0.00

2.00

........................................................AAAAAAAAAACACAACAACAGG............................................................................................................................................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACAACTGG............................................................................................................................................................................

1.00

0.00

1.00

.............................................CTCCCCCCCCAAAAAAAAAAATTG.....................................................................................................................................................................................

1.00

0.00

1.00

...............................................................AAACACAACAACAACAACAAAC.....................................................................................................................................................................

1.00

0.00

1.00

........................................................AAAAAAAAAACACAACAACAACTG..........................................................................................................................................................................

1.00

0.00

1.00

....................................................CCCAAAAAAAAAAACACAAC..................................................................................................................................................................................

1.00

0.00

1.00

..................................CCCCCACCTATCTCCTGTA.....................................................................................................................................................................................................

1.00

0.00

1.00

..........................................................................................................................GGGGGAGAAGAGAGGCCG..............................................................................................................

1.00

0.00

1.00

........................................................................................................................GAGGGGGAGAAGAGAGTATG..............................................................................................................

1.00

0.00

1.00

....................................................................CAACAACAACAACAACAGAACACTG.............................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................GAGGGGGAGAAGAGAGGATATT............................................................................................................

1.00

0.00

1.00

..........................................TATCTCCCCCCCCAATTC..............................................................................................................................................................................................

1.00

0.00

1.00

....................................................CCCAAAAAAAAAAACACAAAG.................................................................................................................................................................................

1.00

0.00

1.00

.........................................................AAAAAAAAACACAACACGG..............................................................................................................................................................................

1.00

0.00

1.00

................................................CCCCCCCAAAAAAAAAAATTGC....................................................................................................................................................................................

1.00

0.00

1.00

..........................................................................................................................GGGGGAGAAGAGAGGCC...............................................................................................................

1.00

0.00

1.00

......................................CACCTATCTCCCCCCCCTTT................................................................................................................................................................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACAACACG............................................................................................................................................................................

1.00

0.00

1.00

....................................................CCCAAAAAAAAAAACATAG...................................................................................................................................................................................

1.00

0.00

1.00

....................................................CCCAAAAAAAAAAACACAACAT................................................................................................................................................................................

1.00

0.00

1.00

.............................................................................................................................................................TCCCACCCGGCTGACAT............................................................................

1.00

0.00

1.00

.............................................................AAAAACACAACAACAACAACAACACGG..................................................................................................................................................................

1.00

0.00

1.00

..........................................................AAAAAAAACACAACAATAG.............................................................................................................................................................................

1.00

0.00

1.00

......................................................CAAAAAAAAAAACACAACATTC..............................................................................................................................................................................

1.00

0.00

1.00

.................................................................ACACAACAACAACAACAACAGAGGG................................................................................................................................................................

1.00

0.00

1.00

.....................................................................AACAACAACAACAACAGAACTGTA.............................................................................................................................................................

1.00

0.00

1.00

............................................................AAAAAACACAACAACACTGG..........................................................................................................................................................................

1.00

0.00

1.00

....................................................CCCAAAAAAAAAAACACAACAAA...............................................................................................................................................................................

1.00

0.00

1.00

.....................................................CCAAAAAAAAAAACACAACAACAATAG..........................................................................................................................................................................

1.00

0.00

0.50

...............................................................AAACACAACAACAACAACAACAAC...................................................................................................................................................................

1.00

0.00

1.00

.......................................................................................................................................GGAGAGGGATGAGATGCG.................................................................................................

1.00

0.00

1.00

.............................................CTCCCCCCCCAAAAAAAAAAAGT......................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................GAGGGGGAGAAGAGAGGTATT.............................................................................................................

1.00

0.00

1.00

..........................................................................................................................GGGGGAGAAGAGAGGACC..............................................................................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACAACATGGT..........................................................................................................................................................................

1.00

0.00

1.00

........................................CCTATCTCCCCCCCCAAATG..............................................................................................................................................................................................

1.00

0.00

1.00

..........................................................AAAAAAAACACAACAACACTGG..........................................................................................................................................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACAACAACAATTGG......................................................................................................................................................................

1.00

0.00

1.00

....................................................CCCAAAAAAAAAAACATTTG..................................................................................................................................................................................

1.00

0.00

1.00

.................................................CCCCCCAAAAAAAAAAAACCC....................................................................................................................................................................................

1.00

0.00

1.00

.................................................CCCCCCAAAAAAAAAAAACCA....................................................................................................................................................................................

1.00

0.00

1.00

..........................................................................................................................GGGGGAGAAGAGAGGAGAGC............................................................................................................

1.00

0.00

1.00

........................................................AAAAAAAAAACACAACACGG..............................................................................................................................................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACAACAACTGG.........................................................................................................................................................................

1.00

0.00

1.00

.........................................................AAAAAAAAACACAACAACAACACG.........................................................................................................................................................................

1.00

0.00

1.00

...................................................CCCCAAAAAAAAAAACATTC...................................................................................................................................................................................

1.00

0.00

1.00

..........................................................AAAAAAAACACAACAAGTC.............................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................GAGGGGGAGAAGAGAGA.................................................................................................................

1.00

0.00

1.00

..........................................................................................................................GGGGGAGAAGAGAGGAGAC.............................................................................................................

1.00

0.00

1.00

........................................................AAAAAAAAAACACAACAACGGT............................................................................................................................................................................

1.00

0.00

1.00

........................................................AAAAAAAAAACACAACAACTG.............................................................................................................................................................................

1.00

0.00

1.00

........................................................AAAAAAAAAACACAACAACGG.............................................................................................................................................................................

1.00

0.00

1.00

................................................CCCCCCCAAAAAAAAAAACACACGGC................................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................................................................................................GGCCTGGCCATGTCCCTTAC..............................

1.00

0.00

1.00

..........................................................AAAAAAAACACAACAACAACCGG.........................................................................................................................................................................

1.00

0.00

1.00

.......................................................AAAAAAAAAAACACAACAACTTG............................................................................................................................................................................

1.00

0.00

1.00

........................................................................................................................GAGGGGGAGAAGAGAGGATG..............................................................................................................

1.00

0.00

1.00

.....................................................TTGTTGTTGTGTTTTTTTTTTTGG.............................................................................................................................................................................

1.00

0.50

...................................................CCCCAAAAAAAAAAACAGC....................................................................................................................................................................................

1.00

0.00

1.00

.....................................................TGTTGTTGTGTTTTTTTTTTTGG..............................................................................................................................................................................

0.50

....................................................CCCAAAAAAAAAAACACAACAACAATC...........................................................................................................................................................................

0.50

0.00

0.50

.....................................................CCAAAAAAAAAAACACAACAT................................................................................................................................................................................

0.50

0.00

0.50

.....................................................TGTTGTGTTTTTTTTTTTGG.................................................................................................................................................................................

0.50

.....................................................CCAAAAAAAAAAACACAACAATA..............................................................................................................................................................................

0.50

0.00

0.50

.....................................................CCAAAAAAAAAAACACAACAC................................................................................................................................................................................

0.50

0.00

0.50

......................................................TGTTGTTGTGTTTTTTTTTTTG..............................................................................................................................................................................

0.50

0.25

.....................................................CCAAAAAAAAAAACACAACAATAG.............................................................................................................................................................................

0.50

0.00

0.50

.....................................................CCAAAAAAAAAAACACAACAAC...............................................................................................................................................................................

0.50

0.00

0.50

.....................................................CCAAAAAAAAAAACACAACATAGA.............................................................................................................................................................................

0.50

0.00

0.50

.....................................................GTTGTTGTGTTTTTTTTTTTGG...............................................................................................................................................................................

0.50

.....................................................CCAAAAAAAAAAACACAACATAG..............................................................................................................................................................................

0.50

0.00

0.50

....................................................TTGTTGTTGTGTTTTTTTTTTTGGG.............................................................................................................................................................................

0.50

..............................................GTTTTTTTTTTTGGGGGGGGA.......................................................................................................................................................................................

0.25

....................................................GTGTTTTTTTTTTTGGG.....................................................................................................................................................................................

0.11

....................................................CCCAAAAAAAAAAACACCGG..................................................................................................................................................................................

0.11

0.00

0.11