ID: uc001tuv.1_intron_1_0_chr12_113646315_r.3p
GENE: (1)
chr12:113646265-113646514-


(13)
B-CELL
(1)
BRAIN
(8)
BREAST
(20)
CELL-LINE
(1)
CERVIX
(1)
FIBROBLAST
(1)
HELA
(4)
LIVER
(1)
OTHER
(4)
SKIN
(1)
TESTES
(4)
UTERUS

Sense strand
TCCGGCAATGTCTCTAGCTCCTCTGGGAACTGATGGCTGTGGTTCAAACTTCCCCTGGGTGACCCTGGGCCCCAGGCTCACCATCTCTTCATGTGGTGGCTTCCTGCCATTGACAATTGCGGGATGGCTTTGTCTTCCCCTGGTTGGCCTCTCAACTCTCCCATCACTGATGTAACCAGTCTCTGGTTTTAAATCCTTAGAATGCTGTCTGTATGCCTGGCTGGTCCCCGCCTGACACATGTGCCTGAGA
..............................................................................................((((((.....))))))(((((..((......)).)))))....................................................................................................................
.....................................................................................86.................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR038860(GSM458543)
MM426. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................ATGTGGTGGCTTCCTTTT..............................................................................................................................................18190.000.0046.0027.0019.0012.0010.008.005.005.004.005.005.004.003.003.003.003.00-2.00--2.001.001.002.002.00---1.00-1.001.00-1.001.00---1.00-1.00-1.001.001.001.001.00----1.001.001.00-1.001.001.00---
..........................................................................................ATGTGGTGGCTTCCTTTA..............................................................................................................................................187.000.001.001.00--1.00-1.001.00-----------------1.00--------------------------------1.00--
..........................................................................................ATGTGGTGGCTTCCTTTTA.............................................................................................................................................195.000.00-1.00-1.001.00-1.00------------------1.00-----------------------------------
..........................................................................................ATGTGGTGGCTTCCTTTAA.............................................................................................................................................193.000.00-1.00---1.00----------------1.00--------------------------------------
..........................................................................................ATGTGGTGGCTTCCTTTTT.............................................................................................................................................193.000.00--1.00--------------1.00---1.00---------------------------------------
.......................................................................................................................................................................................................GAATGCTGTCTGTATGCCTGGCTGGT.........................2612.002.00----------------2.00--------------------------------------------
..................................................................................................................AATTGCGGGATGGCTTTGT.....................................................................................................................1912.002.00----1.00-------------------------------1.00------------------------
..........................................................................................ATGTGGTGGCTTCCTTGT..............................................................................................................................................181.000.001.00------------------------------------------------------------
..........................................................................................ATGTGGTGGCTTCCTGTT..............................................................................................................................................181.000.00--------1.00----------------------------------------------------
.................CTCCTCTGGGAACTGATGGCTG...................................................................................................................................................................................................................2211.001.00---------------------------------------1.00---------------------
.......................................................................................................................................................................................................GAATGCTGTCTGTATGCCTGGCTGG..........................2511.001.00----------------1.00--------------------------------------------
....................CTCTGGGAACTGATGGCTG...................................................................................................................................................................................................................1911.001.00------------------------------------------------------1.00------
..........................................................................................ATGTGGTGGCTTCCTATT..............................................................................................................................................181.000.00--------------------------------------------------1.00----------
....................CTCTGGGAACTGATGACAA...................................................................................................................................................................................................................191.000.00-----------------------------------1.00-------------------------
......................................................................................................................................TTCCCCTGGTTGGCCTCTC.................................................................................................1911.001.00--------------------------1.00----------------------------------
.............................................................................................................................................................................................................TGTCTGTATGCCTGGCTGGT.........................2011.001.00-----------------------------1.00-------------------------------
.........................................................................................CATGTGGTGGCTTCCTTT...............................................................................................................................................181.000.001.00------------------------------------------------------------
.................CTCCTCTGGGAACTGATGGC.....................................................................................................................................................................................................................2011.001.00------1.00------------------------------------------------------
..........................................................................................ATGTGGTGGCTTCCTTTG..............................................................................................................................................181.000.00--------1.00----------------------------------------------------
.....................................................................................................................TGCGGGATGGCTTTGTGTAG.................................................................................................................201.000.00-----------------------------------------------1.00-------------
..............................................................................CACCATCTCTTCATGTTTTT........................................................................................................................................................201.000.00-----------------------------------------1.00-------------------
..........................................................................................ATGTGGTGGCTTCCTCTA..............................................................................................................................................181.000.00-------------------1.00-----------------------------------------
..........................................................................................ATGTGGTGGCTTCCTTTTC.............................................................................................................................................191.000.00-------------------------------------1.00-----------------------
..........................................TTCAAACTTCCCCTGGG...............................................................................................................................................................................................1720.500.50--------------------------0.50----------------------------------
...........................................................................................................................................................................................TTTAAATCCTTAGAATG..............................................1720.500.50-----------------------------------------------------------0.50-
................................................................................................................................................................................CAGTCTCTGGTTTTAAA.........................................................1720.500.50------------------------------------------------------------0.50

Antisense strand
TCCGGCAATGTCTCTAGCTCCTCTGGGAACTGATGGCTGTGGTTCAAACTTCCCCTGGGTGACCCTGGGCCCCAGGCTCACCATCTCTTCATGTGGTGGCTTCCTGCCATTGACAATTGCGGGATGGCTTTGTCTTCCCCTGGTTGGCCTCTCAACTCTCCCATCACTGATGTAACCAGTCTCTGGTTTTAAATCCTTAGAATGCTGTCTGTATGCCTGGCTGGTCCCCGCCTGACACATGTGCCTGAGA
..............................................................................................((((((.....))))))(((((..((......)).)))))....................................................................................................................
.....................................................................................86.................................................137...............................................................................................................
SizePerfect hitTotal NormPerfect NormSRR039637(GSM518474)
THP1_total_sRNAs. (cell line)
SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)
SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)
SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)
SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)
TAX577743(Rovira)
total RNA. (breast)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR038860(GSM458543)
MM426. (cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)
SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553576(SRX182782)
source: Testis. (testes)
SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191608(GSM715718)
193genomic small RNA (size selected RNA from . (breast)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)
SRR029130(GSM416759)
DLD2. (cell line)
SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189784SRR029124(GSM416753)
HeLa. (hela)
SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
TAX577588(Rovira)
total RNA. (breast)
SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)
SRR191465(GSM715575)
113genomic small RNA (size selected RNA from . (breast)
SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)
SRR033724(GSM497069)
L428 cell line (L428). (B cell)
SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR191551(GSM715661)
32genomic small RNA (size selected RNA from t. (breast)
SRR040006(GSM532891)
G601N. (cervix)
SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR038853(GSM458536)
MELB. (cell line)
SRR038862(GSM458545)
MM472. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
.........................................GTTCAAACTTCCCCTGTCTG............................................................................................................................................................................................. 202.000.00------------------2.00------------------------------------------
......................................AGGGGAAGTTTGAACCAC.................................................................................................................................................................................................. 1811.001.00--------------------------------1.00----------------------------
....................................................................................................................................TCTTCCCCTGGTTGGCCTTGTG................................................................................................ 221.000.00------------------------------------------------1.00------------
.......ATGTCTCTAGCTCCTCCG................................................................................................................................................................................................................................. 181.000.00---------------------------1.00---------------------------------
...................................................................................................................................................................................................................................CCGCCTGACACATGTGCCTCC.. 211.000.00-------------------1.00-----------------------------------------
........................................................................GAAGAGATGGTGAGCCTG................................................................................................................................................................ 1811.001.00--1.00----------------------------------------------------------
....................CTCTGGGAACTGATGGC..................................................................................................................................................................................................................... 171.000.00-------------------------------------------------1.00-----------