ID: uc001tsh.2_intron_1_0_chr12_111891650_r.5p
GENE: (24)
chr12:111892649-111892898-


(1)
AGO2.ip 		(28)
B-CELL 		(14)
BRAIN 		(4)
BREAST 		(17)
CELL-LINE 		(1)
HELA 		(1)
LIVER 		(4)
OTHER 		(7)
SKIN 		(1)
TESTES 		(1)
XRN.ip

Sense strand
GTGGGCTAGAGATGCGACTCAGTTGGATCTATCTCTCAGAAGGCTACCTTGTAAGTAGAGTTCCACAGCTCTGGGAAGTTTGGGCGTCCTCACCCTGCAAAGTTTAGGTTCTGTGGTGTAGCGCACTGCAGTTGATTTGCTTTTTGATAGTGGGGAGGGAAGCCGGTTTGGTCCGTGTGGGCCAGCGTGGTTTGGTGGAGTCAGCTTCATAAGAGCTGGGGTCCTGTAGGTGTCTACCAGAGGCTGGTGG
...........................................................(((((((((..((..(((.((((((.((....))))..)))).))).))..))))))...)))................................................................................................................................
...........................................................60..................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037936(GSM510474)
293cand1. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..........................................................................................................GGTTCTGTGGTGTAGTGG..............................................................................................................................18399.331.6711.676.006.333.673.674.673.674.003.333.004.333.002.002.33-2.672.003.002.00-2.33-1.331.00-1.331.332.001.000.671.000.671.000.671.33-----1.000.670.33---0.67-1.00----0.671.001.000.330.670.330.330.670.330.33-0.330.330.330.33--0.330.330.33--0.330.33-
..........................................................................................................GGTTCTGTGGTGTAGTGGT.............................................................................................................................19325.671.67-2.00-1.672.331.332.331.671.001.670.330.331.671.00-0.670.33-1.00-0.33-1.00---0.67-0.330.670.33--0.67-------0.330.67---------------0.33--0.330.33----------0.33----
..........................................................................................................GGTTCTGTGGTGTAGTG...............................................................................................................................1734.671.67-0.33-1.00----0.33--0.33-------------0.67--0.330.33-0.33--------------0.33------------0.33--------0.33---------
.....................................................................................................................................................GTGGGGAGGGAAGCCGGTTTGGTCCGTGTGGG.....................................................................3212.002.00------------------------2.00-----------------------------------------------------
............................CTATCTCTCAGAAGGCTACC..........................................................................................................................................................................................................2012.002.00---------------------2.00--------------------------------------------------------
..........................................................................................................GGTTCTGTGGTGTAG.................................................................................................................................1531.671.67--------------1.00------0.33-----------------------------------------------0.33--------
..........................................................................................................GGTTCTGTGGTGTAGTCAT.............................................................................................................................1931.331.670.67---------------0.67-------------------------------------------------------------
...................CAGTTGGATCTATCTCTCAGAAGG...............................................................................................................................................................................................................2411.001.00-------------------------------------1.00----------------------------------------
.....................................................................................................GTTTAGGTTCTGTGGTGTAGCGCACTG..........................................................................................................................2711.001.00-----------------------------------1.00------------------------------------------
..................TCAGTTGGATCTATCTCTCAGAAGGC..............................................................................................................................................................................................................2611.001.00--------------------------------------------------1.00---------------------------
.......................................................................................................TTAGGTTCTGTGGTGTAGCGCACTGCAGCT.....................................................................................................................301.000.00-------------------1.00----------------------------------------------------------
................................................................................................................................................................................................................ATAAGAGCTGGGGTCCTGTAGGTGTCCACC............301.000.00-------------------1.00----------------------------------------------------------
..........................................................................................................GGTTCTGTGGTGTAGCAGTC............................................................................................................................201.000.00---------------------------------------1.00--------------------------------------
.............................................................................................................................................................................................................TTCATAAGAGCTGGGGTCCTGTAG.....................2411.001.00-------------------------------------------------1.00----------------------------
................................................................ACAGCTCTGGGAAGTTTGGGCGTC..................................................................................................................................................................2411.001.00-----------------------1.00------------------------------------------------------
....................................................................................................................................................................................................................GAGCTGGGGTCCTGTAGGTGTCTACCAGAGGC......3211.001.00--------------1.00---------------------------------------------------------------
....................AGTTGGATCTATCTCTCAGGACG...............................................................................................................................................................................................................231.000.00-------------------1.00----------------------------------------------------------
..........................................................................................................GGTTCTGTGGTGTAGCGG..............................................................................................................................181.000.001.00-----------------------------------------------------------------------------
...........................................................................................................................................................................................................................GGTCCTGTAGGTGTCGCCA............191.000.00----------------------------------------------------1.00-------------------------
...............................................................................................................................................TTGATAGTGGGGAGGGAAGCCGGTCCGG...............................................................................281.000.00---------------------------------------------1.00--------------------------------
...................CAGTTGGATCTATCTCTCAGAAG................................................................................................................................................................................................................2311.001.00-----------------------------------------------1.00------------------------------
..................................................................................................................................................................................................................AAGAGCTGGGGTCCTGTAGGTGTCTACCA...........2911.001.00--------------1.00---------------------------------------------------------------
..........................................................................................................GGTTCTGTGGTGTAGTGGA.............................................................................................................................1930.671.670.67-----------------------------------------------------------------------------
..........................................................................................................GGTTCTGTGGTGTAGTGT..............................................................................................................................1830.671.67-------------------------------0.33------------------------0.33---------------------
..........................................................................................................GGTTCTGTGGTGTAGTAG..............................................................................................................................1830.331.67-----------------------------------------------------0.33------------------------
..........................................................................................................GGTTCTGTGGTGTAGTGAA.............................................................................................................................1930.331.67--------------------------------------------------------------------------0.33---
..........................................................................................................GGTTCTGTGGTGTAGGGGT.............................................................................................................................1930.331.67--------------------------------0.33---------------------------------------------
..........................................................................................................GGTTCTGTGGTGTAGTGAT.............................................................................................................................1930.331.67---------------------------------------------------------------0.33--------------
..........................................................................................................GGTTCTGTGGTGTAGTTG..............................................................................................................................1830.331.67-------0.33----------------------------------------------------------------------
......................................................................................................................................ATTTGCTTTTTGATAGTG..................................................................................................1840.250.25-----------------------------------------------------------------------------0.25

Antisense strand
GTGGGCTAGAGATGCGACTCAGTTGGATCTATCTCTCAGAAGGCTACCTTGTAAGTAGAGTTCCACAGCTCTGGGAAGTTTGGGCGTCCTCACCCTGCAAAGTTTAGGTTCTGTGGTGTAGCGCACTGCAGTTGATTTGCTTTTTGATAGTGGGGAGGGAAGCCGGTTTGGTCCGTGTGGGCCAGCGTGGTTTGGTGGAGTCAGCTTCATAAGAGCTGGGGTCCTGTAGGTGTCTACCAGAGGCTGGTGG
...........................................................(((((((((..((..(((.((((((.((....))))..)))).))).))..))))))...)))................................................................................................................................
...........................................................60..................................................................128........................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR015361(GSM380326)
Memory B cells (MM55). (B cell)		SRR015358(GSM380323)
NaÌøve B Cell (Naive39). (B cell)		SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		SRR015365(GSM380330)
Memory B cells (MM139). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037936(GSM510474)
293cand1. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189784SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)		SRR038859(GSM458542)
MM386. (cell line)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR038854(GSM458537)
MM653. (cell line)		SRR037932(GSM510470)
293cand4_rep1. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		SRR033714(GSM497059)
Burkitt Lymphoma (BL134). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR033731(GSM497076)
h929 Cell line (h929). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
............TGCGACTCAGTTGGACCC............................................................................................................................................................................................................................ 181.000.00--------------------------------------------1.00---------------------------------
................................................................................................................................................................................................................CTACAGGACCCCAGCTCTTAT..................... 2111.001.00-------------------------------------------1.00----------------------------------
...............TAGATCCAACTGAGTC........................................................................................................................................................................................................................... 1611.001.00---------------------------------------------------1.00--------------------------
..................CTTCTGAGAGATAGATCCAACTGA................................................................................................................................................................................................................ 2411.001.00------------------------------------1.00-----------------------------------------
.....................................................................................................................................GATTTGCTTTTTGATACAG.................................................................................................. 191.000.00--------------------------------------1.00---------------------------------------
...........................................................................................................................CAAATCAACTGCAGTG............................................................................................................... 1630.330.33--------------0.33---------------------------------------------------------------