ID: uc001trq.1_intron_3_0_chr12_111093144_r.3p
GENE: HVCN1(4)
chr12:111093094-111093343-


(2)
B-CELL
(1)
CELL-LINE
(1)
CERVIX
(2)
LIVER
(6)
OTHER
(3)
SKIN
(1)
TESTES

Sense strand
CAGCTTCTATCAGAGAGGAGCTGGCCCTGCACAGCCTCCATCCTGGTGGGGCCTCTGGCGAGCTATAGCAGTAGCCTCCCATCCTTAATGGCTTTGCCCAGTGGTTTCACCCACGTGCTTCCAAGCCAGCTCTTAATGATGGGAGAGGGAGGGCCTCTGTGGGGGTCTCATGATCTCTGGCACCTTCCCTCGGCCCACAGGTCATCATCATCTGCTTGGTGGTTCTGGATGCCCTCCTGGTGCTTGCTGA
...............................................................................................((...((((......))))..(((....)))..))......((.((((.(((((((((((.....(((((((....)))))))))).))).)))))..))))))...................................................
............................................................................................93.........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR343335SRR343334SRR343336SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040028(GSM532913)
G026N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
.................................................................................................CCAGTGGTTTCACCCTATG......................................................................................................................................19126.000.0092.0015.009.005.003.002.00----------
.................................................................................................CCAGTGGTTTCACCCTA........................................................................................................................................173.000.00--2.001.00------------
.................................................................................................CCAGTGGTTTCACCCTGTG......................................................................................................................................193.000.003.00---------------
.................................................................................................CCAGTGGTTTCACCCTAAG......................................................................................................................................192.000.002.00---------------
.................................................................................................................................................................................................................ATCTGCTTGGTGGTTCTGG......................1912.002.00------2.00---------
.................................................................................................CCAGTGGTTTCACCCTATC......................................................................................................................................191.000.00-1.00--------------
................................................................................................................................................................................CTGGCACCTTCCCTCGGCCCACA...................................................2311.001.00----------1.00-----
.................................................................................................CCAGTGGTTTCACCCTATA......................................................................................................................................191.000.001.00---------------
...............AGGAGCTGGCCCTGCACA.........................................................................................................................................................................................................................1821.001.00------------0.50-0.50-
.................................................................................................CCAGTGGTTTCACCCTATT......................................................................................................................................191.000.00-1.00--------------
...............AGGAGCTGGCCCTGCGGAT........................................................................................................................................................................................................................191.000.00-------1.00--------

Antisense strand
CAGCTTCTATCAGAGAGGAGCTGGCCCTGCACAGCCTCCATCCTGGTGGGGCCTCTGGCGAGCTATAGCAGTAGCCTCCCATCCTTAATGGCTTTGCCCAGTGGTTTCACCCACGTGCTTCCAAGCCAGCTCTTAATGATGGGAGAGGGAGGGCCTCTGTGGGGGTCTCATGATCTCTGGCACCTTCCCTCGGCCCACAGGTCATCATCATCTGCTTGGTGGTTCTGGATGCCCTCCTGGTGCTTGCTGA
...............................................................................................((...((((......))))..(((....)))..))......((.((((.(((((((((((.....(((((((....)))))))))).))).)))))..))))))...................................................
............................................................................................93.........................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189785SRR343335SRR343334SRR343336SRR189782SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)
SRR040028(GSM532913)
G026N. (cervix)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR553576(SRX182782)
source: Testis. (testes)
SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............................................GGGGCCTCTGGCGAGCTTCAG...................................................................................................................................................................................... 213.000.003.00---------------
.................................................................................................................................................................................................................ATCTGCTTGGTGGTTCCCA...................... 192.000.00--1.001.00------------
.............................................GTGGGGCCTCTGGCGAGCTAGT....................................................................................................................................................................................... 221.000.001.00---------------
..............................................................................................................TAAGAGCTGGCTTGGAAGCACGTGG................................................................................................................... 2511.001.00---------1.00------
...............................................GGGGCCTCTGGCGAGCTCAG....................................................................................................................................................................................... 201.000.001.00---------------
.................................................................................................................CGTGCTTCCAAGCCAATC....................................................................................................................... 181.000.00--------1.00-------
..................................................................AGCAGTAGCCTCCCATTGT..................................................................................................................................................................... 191.000.00-----1.00----------
........................................................................................................................................................GAGACCCCCACAGAGGC................................................................................. 1720.500.50-------------0.50--
......................................................................................................................................................................................................................................CAAGCACCAGGAGGGC.... 1660.170.17---------------0.17