ID: uc001tqs.2_intron_6_0_chr12_110903020_r.5p
GENE: (1)
chr12:110905731-110905980-


(2)
B-CELL 		(6)
BREAST 		(35)
CELL-LINE 		(2)
CERVIX 		(3)
HELA 		(1)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
GCCCCGCGGGCAGCGGGAAGGTGAGGATCTGCGGGGACAAGGAGAGAAAAGTAGGAGTTCGTGGAAGGCGGGAGATTGGGTCCTGAGGGAGTGAGCCGGCGGGTGTGTGTACTGGGAACCCTGAGACCCCACGCAACTCATTTCTGCTGTCTGGCTTCACGTTCTTTTTTGTTGTTGTTTTGAAAGGGAAATAATGGTAGTTGTTAATATTTATTGTATACTTAAGCCCCAGGCAGCAGATGAAACGCCT
...................................................(((...(((((.....)))))...)))...((((..((......))..))))...................................................................................................................................................
............................................45.........................................................104................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR038854(GSM458537)
MM653. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
..................................................................................CTGAGGGAGTGAGCCGGC......................................................................................................................................................18114.0014.00--10.00--4.00------------------------------------------------------
.............CGGGAAGGTGAGGATCTG...........................................................................................................................................................................................................................1817.007.00----6.00-------------------------------------------1.00-----------
...........................................GAGAAAAGTAGGAGTTCGTG...........................................................................................................................................................................................2015.005.005.00-----------------------------------------------------------
.....GCGGGCAGCGGGAAGGTGAG.................................................................................................................................................................................................................................2014.004.004.00-----------------------------------------------------------
.................................................AGTAGGAGTTCGTGGAAGGC.....................................................................................................................................................................................2014.004.00-4.00----------------------------------------------------------
...........................................................................TTGGGTCCTGAGGGAGTGAGCCGGCG.....................................................................................................................................................2614.004.004.00-----------------------------------------------------------
.................................................................................CCTGAGGGAGTGAGCCG........................................................................................................................................................1714.004.00---4.00--------------------------------------------------------
.CCCCGCGGGCAGCGGGAAGGTGAGGATCTGC..........................................................................................................................................................................................................................3114.004.00-------4.00----------------------------------------------------
............................CTGCGGGGACAAGGAGAG............................................................................................................................................................................................................1813.003.002.00----------1.00------------------------------------------------
..................................................GTAGGAGTTCGTGGAAGG......................................................................................................................................................................................1813.003.00-3.00----------------------------------------------------------
...................................................TAGGAGTTCGTGGAAGGC.....................................................................................................................................................................................1813.003.00---3.00--------------------------------------------------------
....................................................AGGAGTTCGTGGAAGGC.....................................................................................................................................................................................1713.003.00---------2.00---1.00----------------------------------------------
.........GCAGCGGGAAGGTGAGGATCTG...........................................................................................................................................................................................................................2213.003.003.00-----------------------------------------------------------
.........................................GAGAGAAAAGTAGGAGTTCG.............................................................................................................................................................................................2013.003.00------------2.00--------------------1.00--------------------------
.......................AGGATCTGCGGGGACAAGGAGAGAAAAG.......................................................................................................................................................................................................2813.003.00------3.00-----------------------------------------------------
.............................................................................GGGTCCTGAGGGAGTGAGCCGGCG.....................................................................................................................................................2412.002.002.00-----------------------------------------------------------
.................AAGGTGAGGATCTGCGGG.......................................................................................................................................................................................................................1812.002.00------------------------------1.001.00----------------------------
................................GGGGACAAGGAGAGAAAAG.......................................................................................................................................................................................................1912.002.00--------------1.00-------------------------1.00-------------------
..................................................GTAGGAGTTCGTGGAAGGCGG...................................................................................................................................................................................2112.002.001.001.00----------------------------------------------------------
..................................................................................................................................................................TCTTTTTTGTTGTTGTTTTGGCT.................................................................231.000.00--------1.00---------------------------------------------------
..........................ATCTGCGGGGACAAGGAGAGAAAAGTA.....................................................................................................................................................................................................2711.001.00------------------------1.00-----------------------------------
...............................................AAAGTAGGAGTTCGTGGA.........................................................................................................................................................................................1811.001.00----------------1.00-------------------------------------------
....................GTGAGGATCTGCGGGGACAAGGA...............................................................................................................................................................................................................2311.001.00---------------1.00--------------------------------------------
................................................................................................................................................................GTTCTTTTTTGTTGTTGTTTTGAG..................................................................241.000.00--------------------------------------1.00---------------------
..............................................AAAAGTAGGAGTTCGTG...........................................................................................................................................................................................1711.001.00----------------------------1.00-------------------------------
..........................................AGAGAAAAGTAGGAGTTCG.............................................................................................................................................................................................1911.001.00--------------1.00---------------------------------------------
.....................................................................................................................ACCCTGAGACCCCACGTTTT.................................................................................................................201.000.00--------------------------------------------1.00---------------
..CCCGCGGGCAGCGGGAAGGTGAGGATC.............................................................................................................................................................................................................................2711.001.00------------------------------------1.00-----------------------
.......................................AGGAGAGAAAAGTAGGAGTT...............................................................................................................................................................................................2011.001.001.00-----------------------------------------------------------
...CCGCGGGCAGCGGGAAGGTGAGGATA.............................................................................................................................................................................................................................261.000.00-----------------------------------------------------1.00------
.....GCGGGCAGCGGGAAGGTGAGGG...............................................................................................................................................................................................................................221.000.00-------------------------------------1.00----------------------
..........................................................TCGTGGAAGGCGGGAGATTGG...........................................................................................................................................................................2111.001.00----------------------------------1.00-------------------------
.............CGGGAAGGTGAGGATCTT...........................................................................................................................................................................................................................181.000.00--------------------------------------------------1.00---------
................................................................................TCCTGAGGGAGTGAGCCGGCGGGGGCG...............................................................................................................................................271.000.00--------1.00---------------------------------------------------
....................................ACAAGGAGAGAAAAGTAGGAGT................................................................................................................................................................................................2211.001.00-----------------------------------------1.00------------------
.......................................AGGAGAGAAAAGTAGGAGTTCG.............................................................................................................................................................................................2211.001.00-----------1.00------------------------------------------------
..........CAGCGGGAAGGTGAGGAT..............................................................................................................................................................................................................................1821.001.00------------------0.50---------------------------------------0.50-
.......................................AGGAGAGAAAAGTAGGAGTTCGTGG..........................................................................................................................................................................................2511.001.001.00-----------------------------------------------------------
.....................................................................................................................................................................TTTTTGTTGTTGTTTTGAAAGGG..............................................................2311.001.001.00-----------------------------------------------------------
...............................................AAAGTAGGAGTTCGTGGAAG.......................................................................................................................................................................................2011.001.00---------------------------------------1.00--------------------
...................................................TAGGAGTTCGTGGAAGGCGGG..................................................................................................................................................................................2111.001.00---------------------------------------------------1.00--------
..............................................................................................................................................................ACGTTCTTTTTTGTTGTTGTTTTGAAAGGG..............................................................3011.001.00--------1.00---------------------------------------------------
............................................................GTGGAAGGCGGGAGATT.............................................................................................................................................................................1711.001.00-----------------------------1.00------------------------------
........................................................GTTCGTGGAAGGCGGGAGATTGG...........................................................................................................................................................................2311.001.00------------------------------------------1.00-----------------
.....................................CAAGGAGAGAAAAGTAGGAGTT...............................................................................................................................................................................................2211.001.001.00-----------------------------------------------------------
................................................................................................................................................................................GTTTTGAAAGGGAAATAATGGTAG..................................................2411.001.00--------------------1.00---------------------------------------
.CCCCGCGGGCAGCGGGAAGGTGAGGATCTGCG.........................................................................................................................................................................................................................3211.001.00-------------------------------------------1.00----------------
...............................................................................GTCCTGAGGGAGTGAGCCGG.......................................................................................................................................................2011.001.00-1.00----------------------------------------------------------
..................AGGTGAGGATCTGCGGGGA.....................................................................................................................................................................................................................1911.001.00------------------1.00-----------------------------------------
.................................................AGTAGGAGTTCGTGGAAGG......................................................................................................................................................................................1911.001.00---------------------------------------------1.00--------------
........................GGATCTGCGGGGACAAG.................................................................................................................................................................................................................1711.001.001.00-----------------------------------------------------------
............................................................................TGGGTCCTGAGGGAG...............................................................................................................................................................1501.001.00----------------------------------------------------1.00-------
............GCGGGAAGGTGAGGATC.............................................................................................................................................................................................................................1711.001.00-------------1.00----------------------------------------------
..............................................AAAAGTAGGAGTTCGTACGG........................................................................................................................................................................................201.000.00----------1.00-------------------------------------------------
..........CAGCGGGAAGGTGAGGATCTG...........................................................................................................................................................................................................................2111.001.001.00-----------------------------------------------------------
...........................................................................................................................................................TTCACGTTCTTTTTTGTTGAT..........................................................................211.000.00--------------------------------------------------------1.00---
...........................................................................................................................................................................................GAAATAATGGTAGTTGGAAA...........................................201.000.00-1.00----------------------------------------------------------
...................................................................GCGGGAGATTGGGTCCTGAGGGAGTGAGC..........................................................................................................................................................2911.001.00---------------------------1.00--------------------------------
...........AGCGGGAAGGTGAGGATTTTT..........................................................................................................................................................................................................................2121.000.501.00-----------------------------------------------------------
....CGCGGGCAGCGGGAAGGTG...................................................................................................................................................................................................................................1911.001.00----------------------1.00-------------------------------------
.......................................................AGTTCGTGGAAGGCG....................................................................................................................................................................................1521.001.00---------------------------------------------------------0.50-0.50
...CCGCGGGCAGCGGGAAGG.....................................................................................................................................................................................................................................1811.001.00---------------------1.00--------------------------------------
............................................................GTGGAAGGCGGGAGATTG............................................................................................................................................................................1811.001.00---------------1.00--------------------------------------------
......................................................................................................................................................................................................................TGTATACTTAAGCCCCAGGCAGCA............2411.001.00-------------------------1.00----------------------------------
....CGCGGGCAGCGGGAAGGT....................................................................................................................................................................................................................................1811.001.00--------------------------1.00---------------------------------
.......................AGGATCTGCGGGGACAAGGA...............................................................................................................................................................................................................2011.001.00-1.00----------------------------------------------------------
.........................................................TTCGTGGAAGGCGGGAGA...............................................................................................................................................................................1811.001.00-------------------------------------------------------1.00----
....................................................AGGAGTTCGTGGAAGGCG....................................................................................................................................................................................1811.001.001.00-----------------------------------------------------------
....CGCGGGCAGCGGGAAGGTGAG.................................................................................................................................................................................................................................2111.001.00------1.00-----------------------------------------------------
.................................................AGTAGGAGTTCGTGGAAGGCG....................................................................................................................................................................................2111.001.00----------------------------------------------1.00-------------
..............................GCGGGGACAAGGAGAGAAA.........................................................................................................................................................................................................1911.001.001.00-----------------------------------------------------------
.....................................................................................................................................CAACTCATTTCTGCTGTCTGGCTCACG..........................................................................................271.000.00-----------------1.00------------------------------------------
.....................................CAAGGAGAGAAAAGTAGGAG.................................................................................................................................................................................................2011.001.00-----------------------------------------------1.00------------
.............................................................................................................................................TTCTGCTGTCTGGCTTCACG.........................................................................................2011.001.00-----------------------1.00------------------------------------
...........AGCGGGAAGGTGAGGATCT............................................................................................................................................................................................................................1911.001.00-----------------------------------1.00------------------------
................................................AAGTAGGAGTTCGTGGAAGG......................................................................................................................................................................................2011.001.001.00-----------------------------------------------------------
..................AGGTGAGGATCTGCGGGG......................................................................................................................................................................................................................1811.001.00----------------1.00-------------------------------------------
...........AGCGGGAAGGTGAGGAT..............................................................................................................................................................................................................................1720.500.500.50-----------------------------------------------------------
......................................AAGGAGAGAAAAGTAGGA..................................................................................................................................................................................................1830.330.330.33-----------------------------------------------------------

Antisense strand
GCCCCGCGGGCAGCGGGAAGGTGAGGATCTGCGGGGACAAGGAGAGAAAAGTAGGAGTTCGTGGAAGGCGGGAGATTGGGTCCTGAGGGAGTGAGCCGGCGGGTGTGTGTACTGGGAACCCTGAGACCCCACGCAACTCATTTCTGCTGTCTGGCTTCACGTTCTTTTTTGTTGTTGTTTTGAAAGGGAAATAATGGTAGTTGTTAATATTTATTGTATACTTAAGCCCCAGGCAGCAGATGAAACGCCT
...................................................(((...(((((.....)))))...)))...((((..((......))..))))...................................................................................................................................................
............................................45.........................................................104................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR189782SRR038854(GSM458537)
MM653. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR038856(GSM458539)
D11. (cell line)		SRR038862(GSM458545)
MM472. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029129(GSM416758)
SW480. (cell line)		SRR029124(GSM416753)
HeLa. (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029128(GSM416757)
H520. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029130(GSM416759)
DLD2. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		TAX577589(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR038853(GSM458536)
MELB. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR040027(GSM532912)
G220T. (cervix)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................CGGCGGGTGTGTGTACA......................................................................................................................................... 171.000.00------------------------------------------------------1.00-----
......................................................................................................................................................................TTTTGTTGTTGTTTTGAACTG............................................................... 211.000.00-------------------------------------------------1.00----------
............................................................................TGGGTCCTGAGGGAGTCCA........................................................................................................................................................... 191.000.00--------------------------------1.00---------------------------
..................................................................................................................................................................................TTTGAAAGGGAAATATTTG..................................................... 191.000.00----------1.00-------------------------------------------------
..........................................AGAGAAAAGTAGGAGTGTT............................................................................................................................................................................................. 191.000.00-----------------1.00------------------------------------------