ID: uc001tql.3_intron_13_0_chr12_110778800_f.3p
GENE: (14)
chr12:110779833-110780082+


(1)
AGO2.ip 		(7)
B-CELL 		(7)
BRAIN 		(11)
BREAST 		(25)
CELL-LINE 		(1)
CERVIX 		(7)
HEART 		(1)
HELA 		(11)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(18)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAACTTATTTGGTAATTTTACATTTCCTAGGTAAAATGTGTTTTGTGACACCAACTTATGAAACAAAAATTCTAAAACTCTTTGCCAAGAGACCTACGGCTCTATTCATTTTCCTCCTGCTTCCCATTCAGTGGGCTTTTGCCTAGGGGTATGAATGTGGCATGCCAGTTGGCTGACCCAACCATTGCTTTCCCTTTCAGACTGGCGATGGCGTGAACGATGCTCCTGCTCTGAAGAAAGCCGAGATTGG
......................................................................................................(((((((...((.(((((..(((((...))))).....))..))))).))))))).............................................................................................
....................................................................................................101......................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR343334SRR343335
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGA................................................................................................21123.0023.004.00--2.00-1.006.00-1.00-----------------1.00---1.00-----1.001.00--1.00---------1.00--1.00-1.00------------------1.00-----------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGC.....................16110.0010.004.005.00-1.00----------------------------------------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGAT...............................................................................................2218.0023.00------2.00-----1.00-----1.00---1.00------1.00---------1.00------------------------------1.00---------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGATTCT............................................................................................2516.0023.00------1.001.00-1.00----------------------------2.00--------------------------------1.00--------------------------
..................................................................................................................................................................................................................GCGTGAACGATGCTCCTGCTCTGAAGAAAGCC........3215.005.001.003.001.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGAAAGCCG.......3014.004.00-2.00---------1.00---------------------------------------------------------1.00----------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGATTC.............................................................................................2414.0023.00------------------1.00----------------1.00----------------------1.00-----------------------------1.00---------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAG..............2314.004.003.001.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGAAAGCC........2714.004.001.00--2.00-1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................GCTCTGAAGAAAGCCGAGATTGG2314.004.00--1.00--------------2.00----------------1.00---------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGAAAGC.........2814.004.004.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGAAAGCCGAG.....3213.003.002.00-1.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGCTC.........................2313.003.00----3.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGC.....................1713.003.00-1.001.00---------------------------------1.00-------------------------------------------------------------
............................................................................................................................................................................................................................TGCTCCTGCTCTGAAGAAAGCCGAGA....2613.003.00--------1.00------------1.00-----------------------------------------1.00----------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCTCTGAAGA.............2513.003.00----2.00---------------------------------------------------------------------------------1.00-----------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGCTCC........................2413.003.00----3.00---------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................CGATGGCGTGAACGATGT...........................183.000.00---------------3.00----------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGA.............2413.003.002.00-1.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GATGCTCCTGCTCTGAAGAAAGCC........2413.003.002.00----1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTC...................1813.003.00-2.001.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TCTGAAGAAAGCCGAGATT..1922.502.501.50-0.50-------------------------------------------------------------------------------------------0.50---
...........................................................................................................................................................................................................GGCGATGGCGTGAACGATGC...........................2012.002.00-------------1.001.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGAAAG..........2512.002.001.001.00------------------------------------------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGATT..............................................................................................2312.0023.00------------------1.00--------1.00----------------------------------------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCTCTGAAGAAAGCC........3012.002.00--1.00-------------------------------1.00---------------------------------------------------------------
...................................................................................................................................................................................................................CGTGAACGATGCTCCTGCTCTGAAGAAAGCCGAGA....3512.002.00-----------2.00--------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGAAAGCCGAG.....3012.002.00-1.00-----------------------------------------------------------------------------1.00------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCT....................1712.002.002.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGAAAGCCG.......2412.002.002.00-------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GCGATGGCGTGAACGATGCTC.........................2112.002.00-------------------------1.00----------------------------------------1.00-------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGAA............2512.002.00-----------------------------1.00---------------------------------------------1.00----------------------
.................................................................................................................................................................................................................................CTGCTCTGAAGAAAGCCGAGATTG.2412.002.001.00-------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGAAA...........2412.002.001.00-1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTGAACGA..............................2112.002.00-----------------1.00--------------------------1.00-----------------------------------------------------
........................................................................................................................................................................................................ACTGGCGATGGCGTGAACGATGCTCC........................2612.002.00--------------------------------1.001.00----------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGAAAGCCGAG.....2612.002.00--2.00-----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGAAA...........2012.002.00--1.001.00----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGCGATGGCGTGAACGATGCTC.........................2212.002.001.00------------------------------------------------------------------1.00------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCTCT..................2012.002.001.001.00------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCT....................1812.002.00---2.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTGAACGATGCTC.........................2612.002.00---------------------------------1.00-------------------------------------------------------1.00--------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGAAAGCC........2912.002.001.00-1.00-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCTCTGAAGAAAGCCGAG.....3312.002.002.00-------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................GCTCCTGCTCTGAAGAAAGCCGAGA....2512.002.00----------1.00----------1.00----------------------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGCTCTGAAGAAAGCC........2812.002.00--1.00--1.00--------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TGCTCTGAAGAAAGCCGAGATTG.2312.002.00--------------1.00----1.00------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGCTCTGAAGAAAGC.........2712.002.002.00-------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................ACTGGCGATGGCGTGAACGA..............................2012.002.00-------1.00------------------------------------------------1.00-----------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGAAA...........2612.002.00--1.00--1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTAT..................................................................................................1912.002.00----------------------1.00----1.00----------------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGCTCTGAAGAAAGCCGAGA....3212.002.00----------------2.00---------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CTGCTCTGAAGAAAGCCG.......1821.501.501.00--------------------------------------0.50----------------------------------------------------------
.....................................................................................................................................................................................................................................TCTGAAGAAAGCCGAGA....1721.501.50-----0.50--------------------------------------------------------------------------------------0.50--0.50--
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGG................................................................................................211.000.00--------1.00-----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GATGGCGTGAACGATGCTC.........................1911.001.00----------1.00---------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GATGCTCCTGCTCTGAAGAAAGCCGAGATTGG3211.001.00-----1.00--------------------------------------------------------------------------------------------
....................................................................................................................................................................................................TCAGACTGGCGATGGCG.....................................1711.001.00-----1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGAAAGCCGAGA....2711.001.001.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................ATGGCGTGAACGATGCTCCTGCTCTGAAGAAAG..........3311.001.00------------------------1.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................CGTGAACGATGCTCCTGCTC...................2011.001.00-1.00------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CGTGAACGATGCTCCTGCTCTGAAGA.............2611.001.00------------------------------------------------------------------------------------------1.00-------
.........................................................................................................................................................................................................CTGGCGATGGCGTGAACGATG............................2111.001.001.00-------------------------------------------------------------------------------------------------
.........................................................................................................TCATTTTCCTCCTGCTATAG.............................................................................................................................201.000.00------------1.00-------------------------------------------------------------------------------------
................................................................................................................................................................................................................TGGCGTGAACGATGCTCCTGCTC...................2311.001.00----1.00---------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGCTCTGAAGAAAGCCGAG.....3111.001.00-1.00------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CTGCTCTGAAGAAAGCCGAGATTGG2511.001.001.00-------------------------------------------------------------------------------------------------
......................................................................................................................................GCTTTTGCCTAGGGGTATGATT..............................................................................................221.000.00-----------------------------------------------------------1.00--------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCTCTGAAGAAA...........2711.001.00-1.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................ACTGGCGATGGCGTGAACA...............................191.000.00-------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTAGGT................................................................................................2111.001.00-----------------------------------------------------------------------------1.00--------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAG..............2111.001.00-1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTG...................................1611.001.001.00-------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CCTGCTCTGAAGAAAGCCGAGATTG.2511.001.00----------1.00---------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGCTCTGAAGAAA...........2511.001.00-1.00------------------------------------------------------------------------------------------------
.......................................................................................................................................................TGAATGTGGCATGCCAGTTGGCTG...........................................................................2411.001.00----------------------------------------------1.00---------------------------------------------------
..............................................................................................................................................................................................TCCCTTTCAGACTGGCGA..........................................1811.001.00---------------------------------------------------1.00----------------------------------------------
........................................................................................................................................................................................................................ACGATGCTCCTGCTCTGAAGAAAG..........2411.001.00----1.00---------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CGTGAACGATGCTCCTGCT....................1911.001.00---------------------------------------------------------------------------------1.00----------------
.........................................................................................................................................................................................................................CGATGCTCCTGCTCTGAAGAAAGCCG.......2611.001.00--1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTGAACGATGCTCC........................2711.001.00-------1.00------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGCTCCTGCT....................2811.001.00----1.00---------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................GGCGTGAACGATGCTCCTGCTCTGAAGA.............2811.001.00-----1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGAAAG..........2111.001.00------------------------------------------------------------------------------1.00-------------------
..........................................................................................................................................................................................................................GATGCTCCTGCTCTGAAGAAAGCCG.......2511.001.001.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTGAAGAAAG..........2711.001.001.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CTGCTCTGAAGAAAGCCGAGATTGGGA2711.001.001.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................ATGGCGTGAACGATG............................1521.001.00-1.00------------------------------------------------------------------------------------------------
...........................................................................................................................................TGCCTAGGGGTATGATTAT............................................................................................191.000.00---------1.00----------------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CTCCTGCTCTGAAGAAAGCCGAGATTGG2811.001.00----------------1.00---------------------------------------------------------------------------------
.........................................................................................................................................................................................................CTGGCGATGGCGTGAACGATGCTC.........................2411.001.00-------------1.00------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TCTGAAGAAAGCCGAGATTGAC221.000.00--1.00-----------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TGCTCTGAAGAAAGCCGAGATTGG2411.001.00-1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................CGATGGCGTGAACGATGCTCC........................2111.001.00--------------------------------------------------------------------1.00-----------------------------
..........................................................................................................................................................................................................................GATGCTCCTGCTCTGAAG..............1811.001.00---1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGAAAGCCGAGA....3111.001.00-1.00------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................................TCTGAAGAAAGCCGAGATTGG2111.001.001.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................GGCGTGAACGATGCTCCTGCTCTG.................2411.001.00--1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTGAACG...............................2011.001.00--------------------------------1.00-----------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTGTGA................................................................................................2111.001.00--------1.00-----------------------------------------------------------------------------------------
.............................................................................................................................................................................................................CGATGGCGTGAACGATGCTCCTGCTCTGAAGAA............3311.001.00------------------------1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................................................GCTCCTGCTCTGAAGAAAGCC........2111.001.00-1.00------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGCTCTGAAGAAAGA.........271.000.00-----1.00--------------------------------------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTACGA................................................................................................2111.001.00-------------------------------------1.00------------------------------------------------------------
........................................................................................................................................................................................................ACTGGCGATGGCGTGAACGAT.............................2111.001.00-------------------1.00------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAA.................................1511.001.00--1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................CGATGCTCCTGCTCTGAAGAAAGCCGAG.....2811.001.00-1.00------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................GGCGATGGCGTGAACGATGCTCC........................2311.001.00-------------------------------------------------------------------------1.00------------------------
...............................................................................................................................TCAGTGGGCTTTTGCCTAGGGGTACG.................................................................................................261.000.00------------------------------------------------------------------------1.00-------------------------
.........................................................................................................................................................................................................................CGATGCTCCTGCTCTGAAG..............1911.001.00---1.00----------------------------------------------------------------------------------------------
..............................................................................................................................................................................................TCCCTTTCAGACTGGCGATGGCGTG...................................2511.001.00---------------------------------------------------------------------------------------1.00----------
................................................................................................................................................................................................................TGGCGTGAACGATGCTCC........................1811.001.00------------------------------------------------------1.00-------------------------------------------
................................................................................................................................................................................................................TGGCGTGAACGATGCTCCTGCTCTGAAGA.............2911.001.00----1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGATTT..........2511.001.00----------------------------------------------------------------------------1.00---------------------
................................................................................................................................................................................................................................CCTGCTCTGAAGAAAGCCGAGA....2211.001.00----1.00---------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTGAACGAT.............................2211.001.00-------------------------------------------1.00------------------------------------------------------
........................................................................................................................................................................................................ACTGGCGATGGCGTGAACGATGCTCCTG......................2811.001.00-------1.00------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CGTGAACGATGCTCCTG......................1711.001.00--1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCTG.................2011.001.001.00-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................CTTTCAGACTGGCGATGGCGTG...................................2211.001.00---------------------------------------------------------1.00----------------------------------------
............................................................................................................TTTTCCTCCTGCTTCCTTAG..........................................................................................................................201.000.00----------------------------------------------------------------1.00---------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGATTT..........2111.001.00------------------------------------------------------------1.00-------------------------------------
........................................................................................................................................................................................................ACTGGCGATGGCGTGAAGGA..............................201.000.00---------------------1.00----------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGC...........................2111.001.00----------1.00---------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GATGCTCCTGCTCTGAAGAAAGCCGAG.....2711.001.00-----1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................TGAAGAAAGCCGAGATTGG1911.001.00-------------------------------------------------1.00------------------------------------------------
...................................................................................................................................................................................................................CGTGAACGATGCTCCTGCTCTGAAGAAA...........2811.001.00-------------------------------------------------------------------------------------1.00------------
............................................................................................................................................................................CTGACCCAACCATTGCTTTCCCTT......................................................2411.001.00--------------------------------------------------------------1.00-----------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGT....................................................................................................1711.001.00-----------------------------------------------------------------1.00--------------------------------
..................................................................................................................................................................................................................................TGCTCTGAAGAAAGCCGA......1811.001.00-------1.00------------------------------------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGC................................................................................................211.000.00------------------------------------------------1.00-------------------------------------------------
............................................................................................................................................................................................................GCGATGGCGTGAACGATGCT..........................2011.001.001.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGAAAGAC........2311.001.00-------------------1.00------------------------------------------------------------------------------
..............................................................................................................................................................................................................................CTCCTGCTCTGAAGAAAGCCGA......2211.001.00-------------------------------1.00------------------------------------------------------------------
..................................................................................................................................................................................................TTTCAGACTGGCGATGGCGT....................................2011.001.00--------------------------1.00-----------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTG......................1511.001.001.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GCGTGAACGATGCTCCTGCTCTGAAGAAAGC.........3111.001.00--1.00-----------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GCGATGGCGTGAACGATGCTCCTG......................2411.001.001.00-------------------------------------------------------------------------------------------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTATGAGTC.............................................................................................2411.0023.00-----------------------------------1.00--------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGCTCTGAAGA.............2311.001.001.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................TGCCTAGGGGTATGATTC.............................................................................................181.000.00---------1.00----------------------------------------------------------------------------------------
................................................................................................................................................................................................................TGGCGTGAACGATGCTCCTGC.....................2111.001.00-----------------------------------------------1.00--------------------------------------------------
...............................................................................................................................................................................................................................TCCTGCTCTGAAGAAAGCCGAGATTG.2611.001.00----------------------------------------------------1.00---------------------------------------------
.............................................................................................................................................................................................................CGATGGCGTGAACGATGCTCCTGCTCTGAA...............3011.001.00-------------------------------1.00------------------------------------------------------------------
........................................................................................................................................................................................................................ACGATGCTCCTGCTCTGAAGAAAGCC........2611.001.00---1.00----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................CTGGCGATGGCGTGAACGATGCTCCTG......................2711.001.00-------1.00------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGGTC.........................231.000.00----1.00---------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCTCTGAAGAAAGC.........2911.001.001.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGAAAGCCGAGATT..3311.001.00-1.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................ACTGGCGATGGCGTGAACG...............................1911.001.001.00-------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GCGATGGCGTGAACGATGATC.........................211.000.00-------------------------1.00------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGCT..........................2211.001.00---------------------------------------------1.00----------------------------------------------------
.................................................................................................................................................................................................................GGCGTGAACGATGCTCCTGCTCTGAAGAAAGCC........3311.001.001.00-------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................GCGTGAACGATGCTCCTG......................1811.001.00----------------------------1.00---------------------------------------------------------------------
...........................................................................................................................................................................................................GGCGATGGCGTGAACGATGCTCCTGCTCTGA................3111.001.001.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTGAACGATGC...........................2411.001.00-----1.00--------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................GACTGGCGATGGCGTGAACGATG............................2311.001.001.00-------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAGA.............1811.001.00-----1.00--------------------------------------------------------------------------------------------
...........................................................................................................................................TGCCTAGGGGTATGATTCT............................................................................................191.000.00---------1.00----------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................CTGAAGAAAGCCGAGATACA201.000.00-----------------------------------------1.00--------------------------------------------------------
.........................................................................................................................................................................................................................CGATGCTCCTGCTCTGAAGAAA...........2211.001.00---1.00----------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................ATGCTCCTGCTCTGAAG..............1711.001.001.00-------------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................ATGGCGTGAACGATGCTCCTGCTCTGAAG..............2911.001.00---1.00----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGCTCCT.......................2511.001.00------------------------------------------1.00-------------------------------------------------------
..............................................................................................................................................................................................................GATGGCGTGAACGATGCTCC........................2011.001.00----------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................................................................................GCGTGAACGATGCTCCTGCTCTGAA...............2511.001.001.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGAAAGC.........2611.001.00---1.00----------------------------------------------------------------------------------------------
.......................................................................................................................................CTTTTGCCTAGGGGTATGATTCT............................................................................................231.000.00-----------------------------------------------------------------------------------1.00--------------
.....................................................................................................................................GGCTTTTGCCTAGGGGTA...................................................................................................1811.001.00-----------------------1.00--------------------------------------------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCTGCTCTG.................2111.001.00--1.00-----------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................GATGCTCCTGCTCTGAAGAAA...........2111.001.001.00-------------------------------------------------------------------------------------------------
..........................................................................................................................................TTGCCTAGGGGTATGATT..............................................................................................181.000.00------------1.00-------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CTGCTCTGAAGAAAGCCGAGATT..2311.001.00--1.00-----------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................TGAACGATGCTCCTGCTCT..................1911.001.00------------------------------1.00-------------------------------------------------------------------
..........................................................................................................................................................................................................TGGCGATGGCGTGAACGATGCG..........................2211.001.00-----------------------1.00--------------------------------------------------------------------------
.......................................................................................................................................................................................................................AACGATGCTCCTGCTCTGAAGA.............2211.001.00----------------------------------------------------------------------------------1.00---------------
..........................................................................................................................................TTGCCTAGGGGTATG.................................................................................................1520.500.50---------------------------------------------------------------------------------------------0.50----
..................................................................................................................................................................................................................................TGCTCTGAAGAAAGCCG.......1720.500.500.50-------------------------------------------------------------------------------------------------
..............................................................................................................................................................................................................GATGGCGTGAACGATG............................1620.500.50-0.50------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................TGCTCTGAAGAAAGCCGGC.....1920.500.500.50-------------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................................CTGCTCTGAAGAAAGCC........1740.500.500.25----0.25--------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................CTCTGAAGAAAGCCG.......1540.500.500.250.25------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................GCGATGGCGTGAACG...............................1520.500.50--0.50-----------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................GTGAACGATGCTCCT.......................1520.500.50-0.50------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................CTGAAGAAAGCCGAG.....1550.400.400.20--0.20----------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ACGATGCTCCTGCTCT..................1630.330.33-----0.33--------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................GAACGATGCTCCTGC.....................1530.330.33-0.33------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................CCTGCTCTGAAGAAAGCC........1830.330.330.33-------------------------------------------------------------------------------------------------
............................................................................................................................................GCCTAGGGGTATGAA...............................................................................................1570.290.29------------------------------------------------------------------------------------------------0.140.14
.............................................................................................................................................................................................................................GCTCCTGCTCTGAAGA.............1640.250.250.25-------------------------------------------------------------------------------------------------

Antisense strand
AAACTTATTTGGTAATTTTACATTTCCTAGGTAAAATGTGTTTTGTGACACCAACTTATGAAACAAAAATTCTAAAACTCTTTGCCAAGAGACCTACGGCTCTATTCATTTTCCTCCTGCTTCCCATTCAGTGGGCTTTTGCCTAGGGGTATGAATGTGGCATGCCAGTTGGCTGACCCAACCATTGCTTTCCCTTTCAGACTGGCGATGGCGTGAACGATGCTCCTGCTCTGAAGAAAGCCGAGATTGG
......................................................................................................(((((((...((.(((((..(((((...))))).....))..))))).))))))).............................................................................................
....................................................................................................101......................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189784SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		TAX577580(Rovira)
total RNA. (breast)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577740(Rovira)
total RNA. (breast)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		GSM532876(GSM532876)
G547T. (cervix)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR189785SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		TAX577590(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444042(SRX128890)
Sample 3cDNABarcode: AF-PP-335: ACG CTC TTC C. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR343334SRR343335
..........................................................................................................................................................................................CGCCAGTCTGAAAGGGAAAGC........................................... 2113.003.00--------------------3.00-----------------------------------------------------------------------------
...........................................................................................................ATTTTCCTCCTGCTTATGG............................................................................................................................ 191.000.00-------------------------------------------------------------1.00------------------------------------
............................................................................................................TTTTCCTCCTGCTTCCACCA.......................................................................................................................... 201.000.00------------------------------------------------------------------------------------1.00-------------
..............................................................................................................................TTCAGTGGGCTTTTGCAAAA........................................................................................................ 201.000.00--------------------------------------------------------------------------------1.00-----------------