ID: uc001tkg.2_intron_7_0_chr12_104378699_f.5p
GENE: (8)
chr12:104378649-104378898+


(1)
AGO2.ip
(2)
B-CELL
(2)
BREAST
(10)
CELL-LINE
(5)
OTHER
(2)
SKIN
(1)
TESTES
(1)
XRN.ip

Sense strand
TATGGACGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCCAAGGTATGTTACTGTCCTCATTCCTTTTATTCATTTTGTGTGTGTATATATACACATATATACTTACATATATATACACATATACATATATACATATACACATATACATATGTGTGCACATATATGCACACGTGTATATATACATGTGTATATATACATATATACACATAAGTATGTATGTCTATATACATATATGTGTGTAT
......................................................................................................................((((((((((....((((....))))....(((((.(((((((((((......))))))))))).)))))..))))))))))..................................................
...............................................................................................................112.....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
....................................................................................................................ATATATACACATATACATATATATG.............................................................................................................2517.000.00--6.005.00-3.003.00---------------
....................................................................................................................ATATATACACATATACATATAGATG.............................................................................................................2516.000.0016.00---------------------
....................................................................................................................ATATATACACATATACATATAGG...............................................................................................................236.000.005.001.00--------------------
....................................................................................................................ATATATACACATATACATATCTAT..............................................................................................................245.000.005.00---------------------
....................................................................................................................ATATATACACATATACATATATAAG.............................................................................................................255.000.004.00------------1.00--------
......................................................................................................................ATATACACATATACATATAGG...............................................................................................................215.000.005.00---------------------
......................................................................................................................ATATACACATATACATATAGATG.............................................................................................................233.000.003.00---------------------
....................................................................................................................ATATATACACATATACATATATCTG.............................................................................................................253.000.002.00--------------1.00------
....................................................................................................................ATATATACACATATACATATATCT..............................................................................................................243.000.003.00---------------------
..........................................................................................................................................................................................ATACATGTGTATATATACACACC.........................................232.000.002.00---------------------
................................................................................................................................................................................ACGTGTATATATACATGTATGC....................................................222.000.00---------2.00------------
.....................................................................................................................TATATACACATATACATATCTAT..............................................................................................................232.000.002.00---------------------
....................................................................................................................ATATATACACATATACATAAATG...............................................................................................................232.000.002.00---------------------
..TGGACGTTCAAGAGGTGCAATA..................................................................................................................................................................................................................................2212.002.00------------1.00-----1.00---
..TGGACGTTCAAGAGGTGCA.....................................................................................................................................................................................................................................1911.001.00---1.00------------------
.....................................................................................................................TATATACACATATACATATGTGG..............................................................................................................231.000.001.00---------------------
.............................................................................................TATATACACATATATAGACG.........................................................................................................................................201.000.00-1.00--------------------
..............................................................................................ATATACACATATATACGAGT........................................................................................................................................201.000.00-------1.00--------------
...............................................................................................................................................................TGTGCACATATATGCAACAC.......................................................................201.000.00-----------1.00----------
.....................ATATACATTTGACCTACAGCTTGCCCACT........................................................................................................................................................................................................291.000.00-------1.00--------------
....................................................................................................................ATATATACACATATACATATATCG..............................................................................................................241.000.001.00---------------------
......................................................................................................................ATATACACATATACATATACTTC.............................................................................................................231.000.001.00---------------------
......................................................................................................................ATATACACATATACATATAAG...............................................................................................................211.000.001.00---------------------
....................................................................................................................ATATATACACATATACATAGATC...............................................................................................................231.000.001.00---------------------
.ATGGACGTTCAAGAGGTGCATT...................................................................................................................................................................................................................................221.000.00----------------1.00-----
.....ACGTTCAAGAGGTGCAATACAC...............................................................................................................................................................................................................................221.000.00----1.00-----------------
....................................................................................................................ATATATACACATATACATATGGG...............................................................................................................231.000.00-1.00--------------------
..........................................................................................................................................ACATATACACATATACATAGATA.........................................................................................231.000.00-1.00--------------------
...................................................................................................................................................................................................................................TCTATATACATATATGCTAG...201.000.001.00---------------------
...........................................................................................................TACTTACATATATATACCCAC..........................................................................................................................211.000.001.00---------------------
...............................................................................................................TACATATATATACACATCCAC......................................................................................................................211.000.001.00---------------------
.................................................................................................................................................................................................TGTATATATACATATAGAAC.....................................201.000.00----1.00-----------------
...................................................................................................................................................................................TGTATATATACATGTCCC.....................................................181.000.001.00---------------------
..TGGACGTTCAAGAGGTGCAA....................................................................................................................................................................................................................................2011.001.00----------1.00-----------
...................................................................................................................................................................................................TATATATACATATATACCAAT..................................211.000.00----1.00-----------------
...........................................................................................................................CACATATACATATATACATATACACACG...................................................................................................281.000.00-1.00--------------------
.....................................................................................................................TATATACACATATACATATAGGT..............................................................................................................231.000.001.00---------------------
.ATGGACGTTCAAGAGGT........................................................................................................................................................................................................................................1711.001.00-----------------1.00----
....................................................................................................................ATATATACACATATACATATAGACG.............................................................................................................251.000.001.00---------------------
.............GAGGTGCAATATACATTTGACCT......................................................................................................................................................................................................................2320.500.50-------------------0.50--
...................CAATATACATTTGACCTACAG..................................................................................................................................................................................................................2120.500.50-0.50--------------------
.................TGCAATATACATTTGACCTACAGCTT...............................................................................................................................................................................................................2620.500.50--------------------0.50-
.......GTTCAAGAGGTGCAATATACATTT...........................................................................................................................................................................................................................2420.500.50---------------------0.50
........................................................................................................................................ATACATATACACATATACATATG...........................................................................................2320.500.50-0.50--------------------

Antisense strand
TATGGACGTTCAAGAGGTGCAATATACATTTGACCTACAGCTTGCCCAAGGTATGTTACTGTCCTCATTCCTTTTATTCATTTTGTGTGTGTATATATACACATATATACTTACATATATATACACATATACATATATACATATACACATATACATATGTGTGCACATATATGCACACGTGTATATATACATGTGTATATATACATATATACACATAAGTATGTATGTCTATATACATATATGTGTGTAT
......................................................................................................................((((((((((....((((....))))....(((((.(((((((((((......))))))))))).)))))..))))))))))..................................................
...............................................................................................................112.....................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR189784DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189787DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR189786SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR037944(GSM510482)
293DcrTN_cand5. (cell line)
SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189783TAX577740(Rovira)
total RNA. (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)
SRR553576(SRX182782)
source: Testis. (testes)
GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
...........................................................................................................TACTTACATATATATACG............................................................................................................................. 1821.000.0021.00---------------------
............................TTTGACCTACAGCTTATTA........................................................................................................................................................................................................... 192.000.002.00---------------------
........................................CTTGCCCAAGGTATGTTTG............................................................................................................................................................................................... 191.000.00-1.00--------------------
...........................................................................................................TACTTACATATATATACC............................................................................................................................. 181.000.001.00---------------------
............................................................................................................................................................................................................ATATATACACATAAGTATTCT......................... 211.000.001.00---------------------
............................................................................................................ACTTACATATATATACACTCA......................................................................................................................... 211.000.001.00---------------------
.........................................................................................................................................TACATATACACATATACGAC............................................................................................. 201.000.001.00---------------------
....................................................GAATGAGGACAGTAACAT.................................................................................................................................................................................... 1811.001.00--------------1.00-------
................................................................................................................................................................................................GTGTATATATACATATATACTG.................................... 221.000.001.00---------------------
....................................................................................................................................................................................GTATATATACATGTGTATGTT................................................. 211.000.001.00---------------------
.................................................................................................................................................................TGCACATATATGCACAAA....................................................................... 181.000.001.00---------------------
..........................................................................................................ATACTTACATATATATAGTCT........................................................................................................................... 211.000.001.00---------------------
............................................................................................................ACTTACATATATATAGCAG........................................................................................................................... 191.000.001.00---------------------
..........................................................................................................ATACTTACATATATATAGTCG........................................................................................................................... 211.000.001.00---------------------
..................................................................................................................................................................................GTGTATATATACATGTGTAAAAT................................................. 231.000.00-------1.00--------------
.........................................................................................................................................................ATATATGTGCACACATATG.............................................................................. 1970.290.29-0.29--------------------
........................................................................................................................................................ATATATGTGCACACATATGT.............................................................................. 2040.250.25-0.25--------------------