ID: uc001tjw.2_intron_40_0_chr12_104106222_f.5p
GENE: (41)
chr12:104106172-104106421+


(1)
B-CELL 		(13)
BRAIN 		(11)
BREAST 		(4)
CELL-LINE 		(3)
CERVIX 		(1)
FIBROBLAST 		(1)
HEART 		(3)
LIVER 		(1)
OTHER 		(1)
TESTES

Sense strand
TTCATGCAAGTGTGCAGCAGGATTCCAAGGAAACGGGACCATCTGCACAGGCAAGCGAAGGAAGGAATTTGCTGGGGGGGCTGGCAAGGCTTGCACAGGCTATTGAGAGGTTCTTGTTCCTGCAGTCTGAATGGGCCTCAGCAGCTGGTGCCAACCACTGATGGTGAATTGTATGTAATGGGGCAGTTGATTGTGCCTGGGGACAGGAAACCAACTGTTCACAGCCTTGACCACAATTGGGATCACCTGG
...................................................................................................((((((.(((((((..((((.........)))))))))))..(((.((((....)))))))...............))))))((((........)))).....................................................
...................................................................................................100..................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTAGT...................................................21114.002.001.001.00-3.00-1.001.00---1.001.00--1.001.001.00-----1.00------------1.00---
..................................................................................................................................................................................TGGGGCAGTTGATTGTATAG....................................................207.000.001.00-2.001.00-1.00--1.00-1.00----------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCAGAT..................................................224.000.001.001.00--1.00--1.00-------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCAGTT..................................................224.000.00-2.00-1.00--1.00--------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGGGTA.....................................................194.000.002.00-------1.00-1.00----------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTAT......................................................183.000.002.00----------------------------1.00---------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCAGTG..................................................223.000.00-1.00--1.00-------------------------1.00--------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTAGA...................................................2113.002.001.00-----1.00------------------------1.00-------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTA.....................................................1913.002.00----1.00-------1.00-------1.00------------------
...............................................................................................................................................................................................TGTGCCTGGGGACAGCGGT........................................192.000.00-------------2.00-------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGGGT......................................................182.000.001.00---------------1.00----------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCACTT..................................................222.000.00---1.00------------------------------1.00----
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTACT...................................................2112.002.00-----------------------1.001.00--------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCTGTT..................................................222.000.00-------1.00-1.00-----------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTATA.....................................................192.000.00--1.00----------------1.00-------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTG.......................................................1712.002.00--------1.001.00-----------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTACA...................................................2111.002.00-----1.00---------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGAAGA...................................................2111.002.00-------1.00-------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTAGGG....................................................201.000.00-----1.00---------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGGGAA.....................................................191.000.00-------------------------1.00-------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGT......................................................1811.002.00------------1.00--------------------------
...........................AGGAAACGGGACCATCTGCACAG........................................................................................................................................................................................................2311.001.00--------------------------------1.00------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGAACA...................................................2111.002.00--------------1.00------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTAGC...................................................2111.002.00----1.00----------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTAG....................................................2011.002.00-------1.00-------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCACAG..................................................221.000.00------1.00--------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGATGT...................................................2111.002.00----1.00----------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTTTAG....................................................201.000.00-----------1.00---------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTATAA....................................................201.000.00--1.00------------------------------------
...........................AGGAAACGGGACCATCTGCA...........................................................................................................................................................................................................2011.001.00---------------------1.00-----------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTAGGA....................................................201.000.00----1.00----------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTAA....................................................2011.002.00-----1.00---------------------------------
.................................CGGGACCATCTGCACAGG.......................................................................................................................................................................................................1821.001.00-----------------0.50------------------0.50--
..................................................................................................................................................................................TGGGGCAGTTGATTGGATA.....................................................191.000.00-----------1.00---------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTAGAG....................................................201.000.00---------------------------------1.00-----
...........................AGGAAACGGGACCATCCGGC...........................................................................................................................................................................................................201.000.00--------------------------1.00------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTAAA.....................................................191.000.00-1.00-------------------------------------
........................................................................................................GAGAGGTTCTTGTTCTATC...............................................................................................................................191.000.00----------------------------1.00----------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCGGTT..................................................221.000.00------------1.00--------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGTG.....................................................1911.002.00-----1.00---------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTACAG....................................................201.000.00--1.00------------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTGCTGTG..................................................221.000.00---------1.00-----------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTAGAC....................................................201.000.00-1.00-------------------------------------
..................................................................................................................................................................................TGGGGCAGTTGATTGTAAAG....................................................201.000.00--1.00------------------------------------

Antisense strand
TTCATGCAAGTGTGCAGCAGGATTCCAAGGAAACGGGACCATCTGCACAGGCAAGCGAAGGAAGGAATTTGCTGGGGGGGCTGGCAAGGCTTGCACAGGCTATTGAGAGGTTCTTGTTCCTGCAGTCTGAATGGGCCTCAGCAGCTGGTGCCAACCACTGATGGTGAATTGTATGTAATGGGGCAGTTGATTGTGCCTGGGGACAGGAAACCAACTGTTCACAGCCTTGACCACAATTGGGATCACCTGG
...................................................................................................((((((.(((((((..((((.........)))))))))))..(((.((((....)))))))...............))))))((((........)))).....................................................
...................................................................................................100..................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormGSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189782GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577743(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577741(Rovira)
total RNA. (breast)		TAX577590(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577738(Rovira)
total RNA. (breast)		TAX577453(Rovira)
total RNA. (breast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577580(Rovira)
total RNA. (breast)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR040010(GSM532895)
G529N. (cervix)		TAX577746(Rovira)
total RNA. (breast)		TAX577740(Rovira)
total RNA. (breast)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040014(GSM532899)
G623N. (cervix)		GSM450610(GSM450610)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577745(Rovira)
total RNA. (breast)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR444067(SRX128915)
Sample 24cDNABarcode: AF-PP-340: ACG CTC TTC . (cell line)		SRR553576(SRX182782)
source: Testis. (testes)
.......................TCCAAGGAAACGGGACCCA................................................................................................................................................................................................................ 191.000.00---------------------------1.00-----------
..............................................................................................................TTCTTGTTCCTGCAGTG........................................................................................................................... 171.000.00---------------1.00-----------------------
..............................................................................................ACAGGCTATTGAGAGACCG......................................................................................................................................... 191.000.00------------------1.00--------------------
......................................................................................................................CCTGCAGTCTGAATGTTG.................................................................................................................. 181.000.00--1.00------------------------------------
.......................................................................................................................................................................................................................TGTTCACAGCCTTGACGGT................ 191.000.00-----------------1.00---------------------
..........................................................................GCCTTGCCAGCCCCCC................................................................................................................................................................ 1630.330.33-------------------------------------0.33-
..........................................................................................................................................................................................................CAGTTGGTTTCCTGT................................. 1580.120.12--------------------------------------0.12