ID: uc001tjw.2_intron_28_0_chr12_104083761_f
GENE: (29)
chr12:104083711-104084251+


(1)
B-CELL
(1)
BREAST
(5)
CELL-LINE
(1)
HEART
(1)
HELA
(1)
LIVER
(1)
OTHER
(8)
SKIN

Sense strand
GATGAGAAAAGCTTCTGGTTGTCACAGAGCAATATTCCAGCCCTAATAAAGTAGGTGTTACTTATTTTATTTTACATCGTATCTGAATGGCATCTGTGTAAACATGTCTTTGAAGTTCAATGTAGGAAAACCACATGGTCCTTCAAATTCGTGGAGCTGAACATGTTCTAGGATTCTCCTTTCCTCCCACCCCAGGATAGTAATAGTCAACAATTGCTGACAGCCAACTCTGCCAAGCACTCTTTTACATATAACCCAGTTAATTCTCTCAACAACCCTATGATAGATATTGTAATGATTCCCATTTTACAGATATGGAAACCAAAGCACAGCGTGGTTGAGTAACTAACTCTAGCCAAGGCTGGTAACTGCAGGGGGAACTTGAATTTTGACTATGGCAATCTGGCTCCAGAGCCTATTCTCTTAACTATTCAATGATACAGCCCCATACATTTATATTGAATTATAGCCTTTGTGGACTATTGTTTCAGGTACCATATGCTACTAGGCACATACAGAGTGGCAGATCTGCAGACCCTGT
...................................................(((((((((.(((...(((........)))..))).)))))))))............(((((((....((((.((....))))))....)))))))..........................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.....................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189785SRR189787SRR390723(GSM850202)
total small RNA. (cell line)
SRR343335SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
....................................................................................................................................................................................................................................................................TAATTCTCTCAACAACTCAG.....................................................................................................................................................................................................................................................................2023.000.0019.00-4.00----------------------
.....................................................................................................................................................................................................................................................................AATTCTCTCAACAACTCAG.....................................................................................................................................................................................................................................................................1913.000.009.00-2.00--2.00-------------------
................................................................................................................................................AAATTCGTGGAGCTGCA............................................................................................................................................................................................................................................................................................................................................................................................173.000.00-2.00--1.00--------------------
..........................................................TACTTATTTTATTTTACGGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00------1.00------------------
.........................................................................................................................................................................................................................................................................................................................TATGGAAACCAAAGCACAGCTAG.............................................................................................................................................................................................................231.000.00---1.00---------------------
........................................................................................................................................................................................................................................................................................................................................................................................GGAACTTGAATTTTGATCAA.................................................................................................................................................201.000.00--------------1.00----------
.....................................................................................................................................................................................................................................................................AATTCTCTCAACAACTCAA.....................................................................................................................................................................................................................................................................191.000.001.00------------------------
..............................................................................................................................................................................................................................................................................................................................................................TCTAGCCAAGGCTGGGGCG............................................................................................................................................................................191.000.00------------1.00------------
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTGGACTATTGTTACT...................................................181.000.00-------1.00-----------------
.........................................................................................................................................................................................................................................................................................................................TATGGAAACCAAAGCACACTTA..............................................................................................................................................................................................................221.000.00---1.00---------------------
.........................................................................................................................................................................................................................................................................................................................TATGGAAACCAAAGCACAGGTAA.............................................................................................................................................................................................................231.000.00---1.00---------------------
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCTACTAGGCACATACAGAG.....................2211.001.00--------1.00----------------
.................................................................................TCTGAATGGCATCTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1751.001.00--------------------0.200.200.200.200.20
...GAGAAAAGCTTCTGGTTGAG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................201.000.00----------1.00--------------
.................................................................................................................................................................................................................ACAATTGCTGACAGCGCAT.........................................................................................................................................................................................................................................................................................................................191.000.00---1.00---------------------
.........................................................................................................................................................................................................................................................................................................................TATGGAAACCAAAGCACAGGTA..............................................................................................................................................................................................................221.000.00-------------1.00-----------
.......................................................TGTTACTTATTTTATTTTTTTA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................221.000.00---------------1.00---------
.................................................................................................................................................AATTCGTGGAGCTGA.............................................................................................................................................................................................................................................................................................................................................................................................1520.500.50----------------0.50--------
..................................................................................CTGAATGGCATCTGTG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1670.290.29------------------0.29------
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGCAGATCTGCAG.......1540.250.25-------------------0.25-----

Antisense strand
GATGAGAAAAGCTTCTGGTTGTCACAGAGCAATATTCCAGCCCTAATAAAGTAGGTGTTACTTATTTTATTTTACATCGTATCTGAATGGCATCTGTGTAAACATGTCTTTGAAGTTCAATGTAGGAAAACCACATGGTCCTTCAAATTCGTGGAGCTGAACATGTTCTAGGATTCTCCTTTCCTCCCACCCCAGGATAGTAATAGTCAACAATTGCTGACAGCCAACTCTGCCAAGCACTCTTTTACATATAACCCAGTTAATTCTCTCAACAACCCTATGATAGATATTGTAATGATTCCCATTTTACAGATATGGAAACCAAAGCACAGCGTGGTTGAGTAACTAACTCTAGCCAAGGCTGGTAACTGCAGGGGGAACTTGAATTTTGACTATGGCAATCTGGCTCCAGAGCCTATTCTCTTAACTATTCAATGATACAGCCCCATACATTTATATTGAATTATAGCCTTTGTGGACTATTGTTTCAGGTACCATATGCTACTAGGCACATACAGAGTGGCAGATCTGCAGACCCTGT
...................................................(((((((((.(((...(((........)))..))).)))))))))............(((((((....((((.((....))))))....)))))))..........................................................................................................................................................................................................................................................................................................................................................................................................
..................................................51.................................................................................................150.....................................................................................................................................................................................................................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR191607(GSM715717)
192genomic small RNA (size selected RNA from . (breast)
SRR189785SRR189787SRR390723(GSM850202)
total small RNA. (cell line)
SRR343335SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR207111(GSM721073)
Whole cell RNA. (cell line)
SRR189782SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189786SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330882(SRX091720)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
................................................................................................................................................AAATTCGTGGAGCTGCG............................................................................................................................................................................................................................................................................................................................................................................................ 177.000.00-6.00--1.00--------------------
................................................................................................................................................AAATTCGTGGAGCTGCGA........................................................................................................................................................................................................................................................................................................................................................................................... 182.000.00-2.00-----------------------
.......................................................................................................................................................................................................................................................................TTCTCTCAACAACCCTAA.................................................................................................................................................................................................................................................................... 181.000.00---------1.00---------------
.................................................AGTAGGTGTTACTTAACTT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00--1.00----------------------
................................TATTCCAGCCCTAATGGTA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................... 191.000.00-----------1.00-------------
.................................................................................................................................................................................................................................................................................................................................CCACGCTGTGCTTTGG............................................................................................................................................................................................................ 1630.330.33-----------------0.33-------
........................................................................................................................................................................................................................AGAGTTGGCTGTCAG...................................................................................................................................................................................................................................................................................................................... 1560.170.17------0.17------------------