ID: uc001tin.2_intron_1_0_chr12_102108016_f
GENE: (2)
chr12:102107966-102108331+


(1)
AGO2.ip 		(2)
BRAIN 		(3)
BREAST 		(12)
CELL-LINE 		(1)
CERVIX 		(6)
HEART 		(5)
LIVER 		(1)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
TTCCCCTTTAGGGGAGCTCTTTGACCATGGCTGTGACTCTCTTTCCACAGGTAAATTAGTGGAGTTTTTTATTTTTTTATGATACCTTAAAAATAAAATGAACTGAGCTGTTTGGTCAGTTTTTTGGATGGATATACATTTGGGAGCAAATGTATGGAGTTGTTTAAAAAGTATGTCAAGAATTCATTTTGATAAGTGTACTTTATTTTAATGCCATGATTATTTCCTTAGAGCTCTGTATTTCTAAACAGCATAGGGCAATTATTTCATAAATTATTTTTAATTCTTAATGATTCTTAAACTTTGTTTCTTTCAGTATTTATGGCAGTGGGAGCTTCAATTGCCGCTCGCTTAGGAACTTATCCT
........................................................................................................................................................................................................................(((.............(((((((.............))))))).......((((.(((((....)))))....))))...................)))...................................................
........................................................................................................................................................................................................................217................................................................................................316................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR343336SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
..............................................................................................................................................................................................................................................TATTTCTAAACAGCATTCAG............................................................................................................2049.000.0019.0010.0012.00--7.00-------1.00------------------------
..................................................................................................................................................................................................................................................................CAATTATTTCATAAATTATTTTTAATTCTTAATG..........................................................................3414.004.00-----------2.00---2.00----------------------
.........AGGGGAGCTCTTTGACCATGGCTGG............................................................................................................................................................................................................................................................................................................................................252.000.00----1.00---1.00-----------------------------
..........................ATGGCTGTGACTCTCTTTCCACA.............................................................................................................................................................................................................................................................................................................................2312.002.00---------1.00----------------------1.00-----
...................TTTGACCATGGCTGTGACTC.......................................................................................................................................................................................................................................................................................................................................2012.002.00---1.00--1.00-------------------------------
........................CCATGGCTGTGACTCT......................................................................................................................................................................................................................................................................................................................................1612.002.00---2.00----------------------------------
..........GGGGAGCTCTTTGACCATGGCT..............................................................................................................................................................................................................................................................................................................................................2212.002.00----1.00-1.00-------------------------------
.........AGGGGAGCTCTTTGACCATGGC...............................................................................................................................................................................................................................................................................................................................................2212.002.00--------1.00-------1.00---------------------
.....CTTTAGGGGAGCTCTTTGACCATGGC...............................................................................................................................................................................................................................................................................................................................................2612.002.00----------2.00---------------------------
.........AGGGGAGCTCTTTGACCATGGCTGT............................................................................................................................................................................................................................................................................................................................................2512.002.00--------1.00-------1.00---------------------
.........................................................AGTGGAGTTTTTTATTTTTTCATG.............................................................................................................................................................................................................................................................................................242.000.00--------------2.00-----------------------
..................CTTTGACCATGGCTGTGACTC.......................................................................................................................................................................................................................................................................................................................................2112.002.00------------2.00-------------------------
............GGAGCTCTTTGACCATGGCTGTGACT........................................................................................................................................................................................................................................................................................................................................2611.001.00--------1.00-----------------------------
........................CCATGGCTGTGACTCTC.....................................................................................................................................................................................................................................................................................................................................1711.001.00---1.00----------------------------------
..............AGCTCTTTGACCATGGCTGTGACT........................................................................................................................................................................................................................................................................................................................................2411.001.00----1.00---------------------------------
....................................................................................CCTTAAAAATAAAATGAACTGAGCTGTTT.............................................................................................................................................................................................................................................................2911.001.00-----------------------1.00--------------
............GGAGCTCTTTGACCATGGCTGGGA..........................................................................................................................................................................................................................................................................................................................................241.000.00-------1.00------------------------------
.........AGGGGAGCTCTTTGAACA...................................................................................................................................................................................................................................................................................................................................................181.000.00---------------------1.00----------------
......TTTAGGGGAGCTCTTTGACC....................................................................................................................................................................................................................................................................................................................................................2011.001.00------1.00-------------------------------
....................TTGACCATGGCTGTGAC.........................................................................................................................................................................................................................................................................................................................................1721.001.00---1.00----------------------------------
..............................................................................................................................................................................................................................................TATTTCTAAACAGCATTCA.............................................................................................................191.000.00-1.00------------------------------------
.........AGGGGAGCTCTTTGACCAT..................................................................................................................................................................................................................................................................................................................................................1911.001.00----1.00---------------------------------
.............GAGCTCTTTGACCATGGCTGTGGCT........................................................................................................................................................................................................................................................................................................................................251.000.00-------1.00------------------------------
..........GGGGAGCTCTTTGACCATGGCTGTGACT........................................................................................................................................................................................................................................................................................................................................2811.001.00---1.00----------------------------------
...............GCTCTTTGACCATGGCTGTGAC.........................................................................................................................................................................................................................................................................................................................................2211.001.00------------------------------1.00-------
...................................................................................................................................................................................................................................................................................................................................................ATTGCCGCTCGCTTAGGAACTT.....2211.001.00-------------------------------1.00------
..........GGGGAGCTCTTTGACCATGGCTGG............................................................................................................................................................................................................................................................................................................................................241.000.00----1.00---------------------------------
.............................................................................................................................................................................................................................................................................................................................................GCTTCAATTGCCGCTCGCTTA............2111.001.00--------------------1.00-----------------
.........................................................................................................................................................................................................................................................................................................................................................GCTCGCTTAGGAACTTATCCT2111.001.00----------------------------------1.00---
...........GGGAGCTCTTTGACCATGGC...............................................................................................................................................................................................................................................................................................................................................2011.001.00------1.00-------------------------------
........TAGGGGAGCTCTTTGACCATGGCTGGGG..........................................................................................................................................................................................................................................................................................................................................281.000.00-------1.00------------------------------
..................................................................................................................................................................................................................................................................................................TGATTCTTAAACTTTGTTTCTTTCAG..................................................2611.001.00---------------------------------1.00----
...................TTTGACCATGGCTGTGACTCTCTTTCC................................................................................................................................................................................................................................................................................................................................2711.001.00---------1.00----------------------------
.............GAGCTCTTTGACCATGGCTGGGGA.........................................................................................................................................................................................................................................................................................................................................241.000.00----1.00---------------------------------
................................................................................................................................................................................................................................................................................................................................................TCAATTGCCGCTCGCTTAGGAACTTT....261.000.00-----------------------------1.00--------
.....................TGACCATGGCTGTGACTCTCTTTCCACA.............................................................................................................................................................................................................................................................................................................................2811.001.00---1.00----------------------------------
..................CTTTGACCATGGCTGTGGCTC.......................................................................................................................................................................................................................................................................................................................................211.000.00------------1.00-------------------------
.....................................................................................................................................................................................................................................................................................................................................................TGCCGCTCGCTTAGGAAC.......1811.001.00---------1.00----------------------------
.........................CATGGCTGTGACTCTCTTTCC................................................................................................................................................................................................................................................................................................................................2111.001.00-----------------1.00--------------------
.....CTTTAGGGGAGCTCTTTGACCATGGCTGTG...........................................................................................................................................................................................................................................................................................................................................3011.001.00----------1.00---------------------------
................................................................................................................................................................................................................................................................................ATTATTTTTAATTCTTTCAG..........................................................................201.000.00-----------1.00--------------------------
...................TTTGACCATGGCTGTGAC.........................................................................................................................................................................................................................................................................................................................................1821.001.00---0.50---0.50------------------------------
...........................................................TGGAGTTTTTTATTTTTTTCCT.............................................................................................................................................................................................................................................................................................221.000.00---------------------------1.00----------
......................................................................................................................................................................................................................................................................................................................................AGTGGGAGCTTCAATTGC......................1811.001.00------------------------------------1.00-
...........................................................................................................................................................................................................................................................................................................................GTATTTATGGCAGTGGGA.................................1811.001.00---------1.00----------------------------
.......................ACCATGGCTGTGACTCTCTTTCC................................................................................................................................................................................................................................................................................................................................2311.001.00---1.00----------------------------------
........................CCATGGCTGTGACTCTCTTTCC................................................................................................................................................................................................................................................................................................................................2211.001.00---1.00----------------------------------
....CCTTTAGGGGAGCTCTTTGACCATG.................................................................................................................................................................................................................................................................................................................................................2511.001.00-------------------------1.00------------
...........GGGAGCTCTTTGACCATGGCTGTGGATT.......................................................................................................................................................................................................................................................................................................................................281.000.00-------1.00------------------------------
..........GGGGAGCTCTTTGACCATG.................................................................................................................................................................................................................................................................................................................................................1911.001.00----------------------1.00---------------
..................................................................................................................................................................................................................................................................................................................................TGGCAGTGGGAGCTTCAATTG.......................2111.001.00----1.00---------------------------------
............................................................................................................................................................................................................................................................................................................................TATTTATGGCAGTGGGAGCTTCAATCG.......................271.000.00-------------1.00------------------------
...................................................................................................................................................................................................................................................................................................GATTCTTAAACTTTGTTTCTTTCAG..................................................2511.001.00----------------------------1.00---------
....................TTGACCATGGCTGTGACT........................................................................................................................................................................................................................................................................................................................................1821.001.00---0.50---0.50------------------------------
...................................................................................................................................................................................................................................TTAGAGCTCTGTATTTCTAAACAGCATA...............................................................................................................2811.001.00----1.00---------------------------------
.............GAGCTCTTTGACCATGGCTGTGACT........................................................................................................................................................................................................................................................................................................................................2511.001.00------1.00-------------------------------
...................TTTGACCATGGCTGTGA..........................................................................................................................................................................................................................................................................................................................................1720.500.50------0.50-------------------------------
..................CTTTGACCATGGCTGT............................................................................................................................................................................................................................................................................................................................................1630.330.33------0.33-------------------------------
..........GGGGAGCTCTTTGACC....................................................................................................................................................................................................................................................................................................................................................1660.170.17-----------------0.17--------------------
......................GACCATGGCTGTGACT........................................................................................................................................................................................................................................................................................................................................1660.170.17-------------------------------------0.17
.....................TGACCATGGCTGTGAC.........................................................................................................................................................................................................................................................................................................................................1690.110.11---0.11----------------------------------

Antisense strand
TTCCCCTTTAGGGGAGCTCTTTGACCATGGCTGTGACTCTCTTTCCACAGGTAAATTAGTGGAGTTTTTTATTTTTTTATGATACCTTAAAAATAAAATGAACTGAGCTGTTTGGTCAGTTTTTTGGATGGATATACATTTGGGAGCAAATGTATGGAGTTGTTTAAAAAGTATGTCAAGAATTCATTTTGATAAGTGTACTTTATTTTAATGCCATGATTATTTCCTTAGAGCTCTGTATTTCTAAACAGCATAGGGCAATTATTTCATAAATTATTTTTAATTCTTAATGATTCTTAAACTTTGTTTCTTTCAGTATTTATGGCAGTGGGAGCTTCAATTGCCGCTCGCTTAGGAACTTATCCT
........................................................................................................................................................................................................................(((.............(((((((.............))))))).......((((.(((((....)))))....))))...................)))...................................................
........................................................................................................................................................................................................................217................................................................................................316................................................
SizePerfect hitTotal NormPerfect NormSRR343335SRR343334SRR343336SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR343337SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR189784SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
.........................................................AGTGGAGTTTTTTATGCAG.................................................................................................................................................................................................................................................................................................. 1910.000.004.006.00------------------------------------
.............................................................................................................................................................................................................................................GTATTTCTAAACAGCATCA.............................................................................................................. 192.000.00-------------------1.00------1.00-----------
..................................................................................................................................................................................................................................CTTAGAGCTCTGTATTTAATT....................................................................................................................... 211.000.00------------------------1.00-------------
.........................................................................................AAAATAAAATGAACTGACTT................................................................................................................................................................................................................................................................. 201.000.00-----------------------------------1.00--
..................................GACTCTCTTTCCACAGATA......................................................................................................................................................................................................................................................................................................................... 191.000.00------------------1.00-------------------