ID: uc001thv.2_intron_3_0_chr12_100995532_f.3p
GENE: (4)
chr12:101004586-101004835+


(1)
AGO2.ip
(1)
BRAIN
(10)
CELL-LINE
(4)
HEART
(1)
OTHER
(3)
SKIN

Sense strand
ACTCTTGGAGCAGATAGTAAAAAAAATTAAGATTCTGTGAAACTTAGATCATCAGTTTTCAAAGAACTTTAATTAAGAAGGAACAACTACTTCCTTATTTGATAGTCTCCTCAAGAAACTCAGAACCATCTTTATTAATCTGCGTGGAAGGAAGTAAGCAAAAATGGGTGTCTGTGATTCTTTTTTTTTTTTTTTTTGAGAAAGAGTCTTGCTCTGTTGCCCAGGTTGGAGTACAGTGGCACGATCATAG
.............................................................................................................(((((((((..((((.((((.(((.(((.(((........)))..)))..))).))))...)))).................)))))))))..................................................
..........................................................................................................107..........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGGTT................................................266.000.006.00-------------------
............................................................................................................................................................................TGTGATTCTTTTTTTTTTTTGAG.......................................................234.000.00-4.00------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGCAGG................................................263.000.002.001.00------------------
...............................................................................................................CAAGAAACTCAGAACTCTG........................................................................................................................193.000.00---2.00-----------1.00----
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGCCGG................................................262.000.00-1.00--1.00---------------
........................................................................................................................................................................................................................TTGCCCAGGTTGGAGTACGGCA............222.000.002.00-------------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTAGGG.....................................................232.000.002.00-------------------
...............................................................................................................................................................................GATTCTTTTTTTTTTTTTTTTTGGG..................................................252.000.002.00-------------------
............................................................................................................................................................................TGTGATTCTTTTTTTTTTTTTTTTTGG...................................................272.000.001.001.00------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGGGC................................................262.000.002.00-------------------
............................................................................................................................................................................TGTGATTCTTTTTTTTTTTTTTTTTC....................................................261.000.001.00-------------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTTTTCGAG..................................................261.000.001.00-------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGAAG................................................261.000.00-1.00------------------
........................................................................................................................................................................................................................TTGCCCAGGTTGGAGTACAGTGGGCAT.......271.000.001.00-------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGGCG................................................261.000.001.00-------------------
........................................................................................................................................................................TGTCTGTGATTCTTTTTTTTTTTTTG........................................................261.000.001.00-------------------
..............................................................................................................................................................................................................................AGGTTGGAGTACAGTGCGAG........201.000.001.00-------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGACG................................................261.000.001.00-------------------
............................................................................................................................................................................TGTGATTCTTTTTTTTTTTTCTGA......................................................241.000.001.00-------------------
......................................................................AATTAAGAAGGAACAAGGT.................................................................................................................................................................191.000.00-------1.00------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTTTGGG....................................................241.000.001.00-------------------
............................................................................................................................................................................TGTGATTCTTTTTTTTTTTTTTTTGAT...................................................271.000.00-1.00------------------
.............................................................................................................................................................................................................................CAGGTTGGAGTACAGTGGCACTCTG....251.000.00--------------1.00-----
............................................................................................................CCTCAAGAAACTCAGAACTCTG........................................................................................................................221.000.00----------------1.00---
...................................................................................................................................................................................CTTTTTTTTTTTTTTTTTGAGAAAGAT............................................271.000.00----1.00---------------
.............................................................................................................................................................................GTGATTCTTTTTTTTTTTTCTC.......................................................221.000.001.00-------------------
....................................................................................................................................................................................TTTTTTTTTTTTTTTTTGAGAAAGATTT..........................................281.000.001.00-------------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTTTTGTGG..................................................261.000.001.00-------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGCGG................................................261.000.001.00-------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGAGAAAGAG............................................3011.001.00-----1.00--------------
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTGAGAAAGGGC...........................................301.000.001.00-------------------
.........................................................................................................................................................................................................................TGCCCAGGTTGGAGTACAGTGGCGGGG......271.000.001.00-------------------
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTGAGCAGC..............................................271.000.001.00-------------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTTTAGTG...................................................251.000.001.00-------------------
.............................................................................................................................................................................GTGATTCTTTTTTTTTTGGCG........................................................211.000.001.00-------------------
...............................................................................................................................................................................GATTCTTTTTTTTTTTTTTTTTGGGC.................................................261.000.001.00-------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGACGCC...............................................271.000.001.00-------------------
.............................................................................................................................CCATCTTTATTAATCTCTTA.........................................................................................................201.000.00-----------------1.00--
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGAAC................................................261.000.001.00-------------------
.......................................................................................................................................................................................TTTTTTTTTTTTTTGAGAAAGAGCCGG........................................271.000.001.00-------------------
................................................................................................................................................................................ATTCTTTTTTTTTTTTTTTTTGGCTC................................................261.000.001.00-------------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTTTTTGTA..................................................261.000.00-1.00------------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTTTTGGTC..................................................261.000.00-1.00------------------
..............................................................................................................................................................................TGATTCTTTTTTTTTTTTTTTGAC....................................................241.000.00-1.00------------------
............................................................................................................................................................................TGTGATTCTTTTTTTTTTTTTTTTTGAG..................................................2820.500.500.50-------------------
............................................................................................................................................................................TGTGATTCTTTTTTTTTTTTTTTTTGAGA.................................................2920.500.500.50-------------------
...............................................................................................................................................GTGGAAGGAAGTAAGC...........................................................................................1630.330.33------------------0.33-
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTGAGAAAGAGTC..........................................3170.140.140.14-------------------
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTGAGAAAGAG............................................2980.120.12-------------------0.12
.................................................................................................................................................................................TTCTTTTTTTTTTTTTTTTTGAGAAAGAGCC..........................................3180.120.120.12-------------------

Antisense strand
ACTCTTGGAGCAGATAGTAAAAAAAATTAAGATTCTGTGAAACTTAGATCATCAGTTTTCAAAGAACTTTAATTAAGAAGGAACAACTACTTCCTTATTTGATAGTCTCCTCAAGAAACTCAGAACCATCTTTATTAATCTGCGTGGAAGGAAGTAAGCAAAAATGGGTGTCTGTGATTCTTTTTTTTTTTTTTTTTGAGAAAGAGTCTTGCTCTGTTGCCCAGGTTGGAGTACAGTGGCACGATCATAG
.............................................................................................................(((((((((..((((.((((.(((.(((.(((........)))..)))..))).))))...)))).................)))))))))..................................................
..........................................................................................................107..........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR444059(SRX128907)
Sample 17cDNABarcode: AF-PP-339: ACG CTC TTC . (skin)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR189782SRR037937(GSM510475)
293cand2. (cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
..................................................................................................................................................................................................................GCTCTGTTGCCCAGGTTGGAGTCC................ 242.000.002.00-------------------
............................................................................................................................................................................................................................CCAGGTTGGAGTACAGTGGCACGAACAG.. 282.000.00-2.00------------------
....................................................................................................................................................................................CTTTCTCAAAAAAAAAAAAAAAAA.............................................. 2401.001.00-------------1.00------
...........................................................................................................................................................................................................................CCCAGGTTGGAGTACAGTGGCACGATTAAG. 301.000.00-1.00------------------
................................................TCATCAGTTTTCAAACTTG....................................................................................................................................................................................... 191.000.00------1.00-------------
...............................................................................................................................................................................................................................GGTTGGAGTACAGTGGCACGATGGG.. 251.000.00-1.00------------------
..........................TTAAGATTCTGTGAAACAA............................................................................................................................................................................................................. 191.000.00-----------1.00--------
................................................................................GAACAACTACTTCCTTAGGTT..................................................................................................................................................... 211.000.00----------1.00---------
.........................................................................................................................................................................................................................TGCCCAGGTTGGAGTACAGTGGCACGATGC... 301.000.001.00-------------------
.................................................................................................................................................................................................................CAACCTGGGCAACAGAGCA...................... 1901.001.00------------1.00-------
....................................................................................................................................................................................................................................GAGTACAGTGGCACGATCATAGTG 241.000.00---------1.00----------
..........................................................................................................................................................................................................AGAGTCTTGCTCTGTTGCCCAGGTACCC.................... 281.000.00-1.00------------------
...........................................................................................................................................................................................................GAGTCTTGCTCTGTTGCCCAGGTACTC.................... 271.000.00-1.00------------------
....................................................................................................................................................................................................................................GAGTACAGTGGCACGATCATATG 231.000.00--1.00-----------------
....................................................................................................................................................................................................................TCTGTTGCCCAGGTTGGAGTACATT............. 251.000.00--1.00-----------------
..................................................................................................................................................................................................................ACTGTACTCCAACCTGGGCAACAGAGC............. 2701.001.00--------1.00-----------
............................................................................................................................................................................................................AGTCTTGCTCTGTTGCCCAGGTTTC..................... 251.000.001.00-------------------
.............................................................................................................................................................................................................................ATGATCGTGCCACTGTACTCCAACCTG.. 2740.250.250.25-------------------