| (8) CELL-LINE | (1) CERVIX | (2) LIVER | (1) OTHER | (2) SKIN | (1) XRN.ip |
| ATTCTAGGAGTCATATCAGCTATTTAAATTACAGTAACTCAATCTCAGGATTATTTAAGTAACTCAGGCTTAAATTTATTTTGAATAATCTTGTTCATTCATATGGTTCTTTTTCTCAATTTTTACTTTTATGTCAGATAAACCAATAAGTATTATTAAATTGTACTTGAACAAAAATAACTAGGTAACATTTATTTCAGGCCAAAGAAGATGATTTAAATTCATTCAATGCCACAGACCTGAAGGATCT ....................................................((((((((.......))))))))......((((((....))))))..((((.(((.................)))..))))..................................................................................................................... ..................................................51...................................................................................136................................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189787 | SRR189786 | SRR189782 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR343335 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR040011(GSM532896) G529T. (cervix) | SRR343336 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM956925F181A(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .....................................................TTTAAGTAACTCAGGATAG.................................................................................................................................................................................. | 19 | 26.00 | 0.00 | - | 11.00 | 5.00 | 3.00 | - | - | 3.00 | - | - | 1.00 | - | 1.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | |
| ...................................................................................................................TCAATTTTTACTTTTATCTT................................................................................................................... | 20 | 8.00 | 0.00 | 6.00 | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................TCAATTTTTACTTTTATTTC................................................................................................................... | 20 | 4.00 | 0.00 | 4.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TTTAAGTAACTCAGGACAG.................................................................................................................................................................................. | 19 | 3.00 | 0.00 | - | 1.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................CCAAAGAAGATGATTTAAATTCA.......................... | 23 | 1 | 2.00 | 2.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................ATTTAAATTCATTCAATGCCACAGACCT......... | 28 | 1 | 2.00 | 2.00 | - | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ................................................................................................................TTCTCAATTTTTACTTGAA....................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TTTAAGTAACTCAGGATCG.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................CAATTTTTACTTTTAACTT................................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TTTAAGTAACTCAGGGTAG.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................TCAATTTTTACTTTTATCCT................................................................................................................... | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | |
| .....................................................TTTAAGTAACTCAGGTTAG.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................................................................TCAATGCCACAGACCTTAGT..... | 20 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TTTAAGTAACTCAGGC..................................................................................................................................................................................... | 16 | 2 | 1.00 | 1.00 | - | - | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................TCAATTTTTACTTTTAAACT................................................................................................................... | 20 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................................TTAAATTCATTCAATGCCACAGAC........... | 24 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - |
| .....................................................................................................TATGGTTCTTTTTCTTG.................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................................GCCAAAGAAGATGATGTCC............................... | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ..................................................................................................................CTCAATTTTTACTTTTATATT................................................................................................................... | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TTTAAGTAACTCAGGATTG.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .....................................................TTTAAGTAACTCAGGATGG.................................................................................................................................................................................. | 19 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................CAATTTTTACTTTTATCTT................................................................................................................... | 19 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .............................................................................................................TTTTTCTCAATTTTTATTG.......................................................................................................................... | 19 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................................................................CAATGCCACAGACCTGAAGG.... | 20 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| .....................................................................................................................................................................................................................ATTTAAATTCATTCAATGCCACAG............. | 24 | 1 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ATTCTAGGAGTCATATCAGCTATTTAAATTACAGTAACTCAATCTCAGGATTATTTAAGTAACTCAGGCTTAAATTTATTTTGAATAATCTTGTTCATTCATATGGTTCTTTTTCTCAATTTTTACTTTTATGTCAGATAAACCAATAAGTATTATTAAATTGTACTTGAACAAAAATAACTAGGTAACATTTATTTCAGGCCAAAGAAGATGATTTAAATTCATTCAATGCCACAGACCTGAAGGATCT ....................................................((((((((.......))))))))......((((((....))))))..((((.(((.................)))..))))..................................................................................................................... ..................................................51...................................................................................136................................................................................................................ | Size | Perfect hit | Total Norm | Perfect Norm | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189784 | SRR189787 | SRR189786 | SRR189782 | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR343335 | SRR039622(GSM531985) HCV(+) Adjacent Tissue Sample. (liver) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR343334 | SRR553572(SRX182778) source: Frontal Cortex. (Frontal Cortex) | SRR207111(GSM721073) Whole cell RNA. (cell line) | SRR040011(GSM532896) G529T. (cervix) | SRR343336 | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | GSM956925F181A(GSM956925) "cell line: HEK293 cell linepassages: 15-20ip. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR207115(GSM721077) XRN1&2 knockdown. (XRN1/XRN2 cell line) | SRR330870(SRX091708) tissue: skin psoriatic involveddisease state:. (skin) | SRR330877(SRX091715) tissue: skin psoriatic involveddisease state:. (skin) | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| .............................................................................................................................................................................................................................TCAGGTCTGTGGCATTGAATGA....... | 22 | 1 | 3.00 | 3.00 | - | - | - | - | - | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..........................................................................................................................................................................................TTGGCCTGAAATAAATGTT............................................. | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| .....................................................................................................................................................................................................................................TGCCACAGACCTGAAAGTA.. | 19 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | |
| .............TTGAGTTACTGTAATTTAAATAGCTGATA................................................................................................................................................................................................................ | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| .......................................................TAAGTAACTCAGGCTTACCCC.............................................................................................................................................................................. | 21 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .......................................................................................................................................................................................................GGCCAAAGAAGATGAAGG................................. | 18 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................AGAAAAAGAACCATATGAATGAACAA...................................................................................................................................... | 26 | 1 | 1.00 | 1.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ...................................................................................................................................................................................................................................CCTTCAGGTCTGTGGCATT.... | 19 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - |