ID: uc001tem.1_intron_11_0_chr12_96384311_r.3p
GENE: HAL(9)
chr12:96384261-96384510-


(4)
B-CELL 		(5)
BRAIN 		(1)
BREAST 		(11)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(1)
HELA 		(8)
LIVER 		(1)
OTHER 		(20)
SKIN 		(1)
UTERUS

Sense strand
TTTTCTTTCTATAACAATTCATCCAGGTCCCTTACATATTAGCTGGGTTTGAAGAATTGTCTTTCCCCAGGTATCTATGCCATAAAGTGATAGATATTGGAGGCAGGGTGTTTGCGGGGGCAGTGGGGGCACTCACTGGCAAAGCAAGGAGAGTCAGAATGCAGTACTCTTGAACTAATTGCTGCCTACTTCTCTCCCAGCCTCCTGCCTGCCCTATGTCCCAGAGAAAGGAACCGTTGGTGCCAGTGGA
...................................................................................................................................................((((((..((...((((((.............))))))...)).)))))).....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................................................AAGGAGAGTCAGAATGCAGTACT..................................................................................2314.004.00--------1.00-------1.00--1.00----------------------1.00-----------------
..................................................................................................................................................AGGAGAGTCAGAATGCAGTAC...................................................................................2113.003.00-1.002.00---------------------------------------------------------
..................................................................................................................................................AGGAGAGTCAGAATGCAGTACT..................................................................................2213.003.003.00-----------------------------------------------------------
....................................TATTAGCTGGGTTTGAAGAA..................................................................................................................................................................................................2013.003.00--3.00---------------------------------------------------------
..................................CATATTAGCTGGGTTTGAAGAATT................................................................................................................................................................................................2413.003.003.00-----------------------------------------------------------
.................................................................................................................................................AAGGAGAGTCAGAATGCAGTGCT..................................................................................233.000.00-----3.00------------------------------------------------------
.........................................................................................................................................................................TTGAACTAATTGCTGCCTACTTCTCTCCCAG..................................................3112.002.00---1.00-----1.00--------------------------------------------------
.........................................................................................................................................................................TTGAACTAATTGCTGCCTACTTCTCTCCCAGA.................................................3212.002.00---2.00--------------------------------------------------------
.................................................................................................................................................AAGGAGAGTCAGAATGCAGTA....................................................................................2112.002.00-1.00-------------------------------------------------------1.00--
...................................................................................................................................................................................TGCTGCCTACTTCTCTCCCAG..................................................2112.002.00---------------------------------1.00---------1.00----------------
.................................................................................................................................................AAGGAGAGTCAGAATGCAGTAC...................................................................................2212.002.00--1.00----------------------------------1.00----------------------
................................................................................................................................................................................................................................AGAAAGGAACCGTTGG..........1612.002.00--------2.00---------------------------------------------------
.................................................................................................................................................AAGGAGAGTCAGAATGCAGTAA...................................................................................2212.002.00-1.00-----------------------1.00----------------------------------
......................................................................................................................................................................................................................................GAACCGTTGGTGCCAGTGG.1911.001.00---------1.00--------------------------------------------------
....................................................AGAATTGTCTTTCCCCAGGT..................................................................................................................................................................................2011.001.001.00-----------------------------------------------------------
........................................................................................................................................................................CTTGAACTAATTGCTGCCTACTTCTC........................................................2611.001.001.00-----------------------------------------------------------
................................................................................................................................................................GCAGTACTCTTGAACTCTG.......................................................................191.000.00----------------------------------------------------1.00-------
...........................................................................................................................................................AGAATGCAGTACTCTTGAAC...........................................................................2011.001.00---------------------------------------1.00--------------------
................................................................................................................................................CAAGGAGAGTCAGAATGCAGTG....................................................................................221.000.00-----------1.00------------------------------------------------
........................................................................................................AGGGTGTTTGCGGGGGGGG...............................................................................................................................191.000.00----------------------------------------1.00-------------------
............................................................................................................................................................................................................................CCAGAGAAAGGAACCGTTGGTGCCAG....2611.001.00--------------------------------------------1.00---------------
................................................................................................................................................................................AATTGCTGCCTACTTCTCTCCCAG..................................................2411.001.00------------1.00-----------------------------------------------
..............................................................................................................................................................ATGCAGTACTCTTGAAC...........................................................................1711.001.00---1.00--------------------------------------------------------
.................................................................................................................................................AAGGAGAGTCAGAATGCA.......................................................................................1811.001.001.00-----------------------------------------------------------
..............................................................................................................................................................................................................................AGAGAAAGGAACCGTTGGTGC.......2111.001.00--1.00---------------------------------------------------------
..............................................................................................................................................................................................................................AGAGAAAGGAACCGTTGGTGCCAGTGGA2811.001.001.00-----------------------------------------------------------
..........................................................................................................................................................................TGAACTAATTGCTGCCTACTTCTCTCCCAG..................................................3011.001.00---1.00--------------------------------------------------------
........................................................................................................................................................................CTTGAACTAATTGCTGCCTACTTCTCTCCCAG..................................................3211.001.00---1.00--------------------------------------------------------
................................................................................................................................................CAAGGAGAGTCAGAATGCAGTACT..................................................................................2411.001.00-----1.00------------------------------------------------------
............................................................................................................................................................GAATGCAGTACTCTTGAAC...........................................................................1911.001.001.00-----------------------------------------------------------
................ATTCATCCAGGTCCCTTATA......................................................................................................................................................................................................................201.000.00-1.00----------------------------------------------------------
.......................................................................................................................................................................TCTTGAACTAATTGCTGCCTACT............................................................2311.001.001.00-----------------------------------------------------------
..................................................................................................................................................................................................................................AAAGGAACCGTTGGTGCC......1811.001.001.00-----------------------------------------------------------
....................ATCCAGGTCCCTTACATATTA.................................................................................................................................................................................................................2111.001.00-1.00----------------------------------------------------------
.................................................................................................................................................AAGGAGAGTCAGAATGCAATA....................................................................................2111.001.00-1.00----------------------------------------------------------
..............................................................................................................................................................................................................................AGAGAAAGGAACCGTTGGTGCCATAGA.271.000.00-----------------------------------------1.00------------------
......................................TTAGCTGGGTTTGAAGAAT.................................................................................................................................................................................................1911.001.00---------------------------------------------------1.00--------
....................................................................................................................................................................................................................................AGGAACCGTTGGTGCC......1611.001.00-----------1.00------------------------------------------------
......................................................................................................................................................................................................................................GAACCGTTGGTGCCAGTG..1811.001.001.00-----------------------------------------------------------
..........................................................................................................................................................................TGAACTAATTGCTGCCTACTTCTCTCCC....................................................2811.001.00-1.00----------------------------------------------------------
....................................................................................................................................................................TACTCTTGAACTAATTGCTGCCTACT............................................................2611.001.001.00-----------------------------------------------------------
.................................................................................................................................................................................ATTGCTGCCTACTTCTCTCCCAG..................................................2311.001.00--------------------------------------------------------1.00---
...................................................................................................................................................................GTACTCTTGAACTAATTGCTGCC................................................................2311.001.001.00-----------------------------------------------------------
......................................................................................................................................................................................TGCCTACTTCTCTCCCAG..................................................1811.001.00------------1.00-----------------------------------------------
............................................................................................................................................................................................................................CCAGAGAAAGGAACCGTTGGT.........2111.001.00-------------------------------1.00----------------------------
.............................................................................................................................................................................................................TGCCTGCCCTATGTCCCAGAGAAA.....................2411.001.001.00-----------------------------------------------------------
...........................................................................................AGATATTGGAGGCAGGGTGTTTG........................................................................................................................................2311.001.00-1.00----------------------------------------------------------
.....................................ATTAGCTGGGTTTGAAATTG.................................................................................................................................................................................................201.000.001.00-----------------------------------------------------------
..................................................................................................................................................................................................................................AAAGGAACCGTTGGTGCG......181.000.00---------------------1.00--------------------------------------
..............................................................................................................................................AGCAAGGAGAGTCAGAATA.........................................................................................191.000.001.00-----------------------------------------------------------
.........................................................................................................................................................................TTGAACTAATTGCTGCCTACTTCTCT.......................................................2611.001.00-1.00----------------------------------------------------------
.................................................................................................................................................AAGGAGAGTCAGAATGCAGTAT...................................................................................2211.002.001.00-----------------------------------------------------------
.........................................................................................................................................................TCAGAATGCAGTACTCTTG..............................................................................1911.001.00--------------------1.00---------------------------------------
................................................................................................................................................CAAGGAGAGTCAGAATGCAGTACTC.................................................................................2511.001.00------------------------------1.00-----------------------------
.................................................................................................................................................................................................................TGCCCTATGTCCCAGAGA.......................1811.001.00-1.00----------------------------------------------------------
...................................................................................................................................................................................TGCTGCCTACTTCTCTCC.....................................................1820.500.500.50-----------------------------------------------------------
......................................................................................................................................................................................................................TATGTCCCAGAGAAAGG...................1720.500.50---0.50--------------------------------------------------------
..................................................................................................................................................................................................................GCCCTATGTCCCAGAGA.......................1730.330.33----------------------------------------------------------0.33-
.....TTTCTATAACAATTCA.....................................................................................................................................................................................................................................1690.110.11-----------------------------------------------------------0.11

Antisense strand
TTTTCTTTCTATAACAATTCATCCAGGTCCCTTACATATTAGCTGGGTTTGAAGAATTGTCTTTCCCCAGGTATCTATGCCATAAAGTGATAGATATTGGAGGCAGGGTGTTTGCGGGGGCAGTGGGGGCACTCACTGGCAAAGCAAGGAGAGTCAGAATGCAGTACTCTTGAACTAATTGCTGCCTACTTCTCTCCCAGCCTCCTGCCTGCCCTATGTCCCAGAGAAAGGAACCGTTGGTGCCAGTGGA
...................................................................................................................................................((((((..((...((((((.............))))))...)).)))))).....................................................
............................................................................................................................................141........................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040036(GSM532921)
G243N. (cervix)		SRR189782SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330860(SRX091698)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038853(GSM458536)
MELB. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
................ATTCATCCAGGTCCCGGC........................................................................................................................................................................................................................ 1816.000.00----3.00-1.001.00------1.00--2.00------1.00--1.00-1.00--------1.00------1.001.00---1.00--1.00------
................ATTCATCCAGGTCCCGGCT....................................................................................................................................................................................................................... 1912.000.002.001.00--3.00-1.001.00--1.00---1.00---------------------------------1.00------1.00----
................ATTCATCCAGGTCCCTGGCT...................................................................................................................................................................................................................... 207.000.00-1.00----1.00---2.00-----1.00-----------------1.00-------------------1.00-----
................ATTCATCCAGGTCCCTGGC....................................................................................................................................................................................................................... 197.000.00------2.001.00-------1.00--1.00-------1.00----------------------1.00----------
................ATTCATCCAGGTCCCTGGCA...................................................................................................................................................................................................................... 202.000.00-----------------------1.00-----------1.00------------------------
................ATTCATCCAGGTCCCTGG........................................................................................................................................................................................................................ 182.000.00----------------------------1.00------------------1.00------------
................ATTCATCCAGGTCCCGGGT....................................................................................................................................................................................................................... 192.000.00-----1.00-------1.00----------------------------------------------
.......................................................................................................................................................................................................CATAGGGCAGGCAGGAGGC................................ 1911.001.00---------1.00--------------------------------------------------
................ATTCATCCAGGTCCCGGAT....................................................................................................................................................................................................................... 191.000.00-------1.00----------------------------------------------------
.........................................................TGTCTTTCCCCAGGTTCAG.............................................................................................................................................................................. 191.000.00------------------------------------1.00-----------------------
...............................................................................................................................................................................................CTCTCCCAGCCTCCTGCCTC....................................... 201.000.00--------------------------------1.00---------------------------
................ATTCATCCAGGTCCCTG......................................................................................................................................................................................................................... 171.000.00---------------1.00--------------------------------------------
..................................................................................................................................................................................................TCCCAGCCTCCTGCCTTAG..................................... 191.000.00----------------------1.00-------------------------------------
................ATTCATCCAGGTCCCAGC........................................................................................................................................................................................................................ 181.000.00-------------1.00----------------------------------------------
.......................................................................................................................................................................................................TAGGGCAGGCAGGAGGC.................................. 1730.330.33-----------0.33------------------------------------------------