ID: uc001tcq.2_intron_1_0_chr12_93863132_f.3p
GENE: (2)
chr12:93864062-93864311+


(1)
BRAIN 		(11)
CELL-LINE 		(1)
HEART 		(1)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
XRN.ip

Sense strand
GAGTATTAAAGTCTTTTTTCTCAGCCAACTGTGCTTTCTTTTTCCTTTTCCTGTCTGTAAACAGAGTTTATAGCTCTTATAAACAGCTCTTATAGGAAGCTTTCCATTTCTAAAGTAGACATGTATAGAAGGCAACAGTAGGTTTGCCTTTTTATATTAAACTATGTGAGCCAACTTTTTATTTTTATTTTTTATTTTAGATTCGGGCGTACATGTGCAGGTTTGTTACGTGGATGTATTACATATACTG
.............................................................................................................((((((((((.(((((.(((((((((........))))))))))))))........((......))...............))))))))))..................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR189782
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTTAG..................................................30127.0027.0014.00-2.002.004.005.00----------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTCTAG..................................................306.000.00--2.002.002.00-----------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTAG.........................................................235.000.003.00--2.00------------------
............................................................................................................TCTAAAGTAGACATGTATAGAAGGC.....................................................................................................................2514.004.00-------4.00--------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTTA..................................................274.000.00-4.00--------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTAG..................................................2712.002.00-1.00-------1.00------------
................................................................................................................................................................................TTTTATTTTTATTTTTTATTTTCTAG................................................262.000.00--1.001.00------------------
...........................................................................................................................................................................CAACTTTTTATTTTTATATG...........................................................202.000.00---2.00------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTTAGAT................................................3212.002.00----2.00-----------------
..............................................................................................................................................................................CTTTTTATTTTTATTTTTTATTTATAG.................................................272.000.001.00-1.00-------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTAG...................................................292.000.002.00---------------------
..............................................................................................................................................................................CTTTTTATTTTTATTTTTTATTTTAG..................................................2612.002.00-----2.00----------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTTAGAC................................................322.000.00----2.00-----------------
.................................CTTTCTTTTTCCTTTTCCCAG....................................................................................................................................................................................................211.000.00--1.00-------------------
...........................................................................................................................................................................CAACTTTTTATTTTTATGTG...........................................................201.000.00----1.00-----------------
......................................................................................................................................................................TGAGCCAACTTTTTATTTTA................................................................201.000.00-----1.00----------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTCGAG.....................................................241.000.00------1.00---------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTCAG..................................................271.000.00-1.00--------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTAG....................................................281.000.001.00---------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTTAT..................................................3011.001.001.00---------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTCAG..................................................301.000.00---1.00------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTCTAG..................................................271.000.00-1.00--------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTTATT................................................291.000.00------1.00---------------
..................................................................................................................................................................................................................ACATGTGCAGGTTTGTTACGCGG.................231.000.00------1.00---------------
.....................................................................................................................................................................................................TAGATTCGGGCGTACATGTGCAGG.............................2411.001.00-----------------1.00----
...........................................................................................................................................................................CAACTTTTTATTTTTATTTTTTATTTCAG..................................................291.000.00---1.00------------------
..............................................................................................................TAAAGTAGACATGTATAGAAGGCAACAGTAGGT...........................................................................................................3311.001.00-------------1.00--------
............................................................................................................................................................................AACTTTTTATTTTTATTTTTTGCCT.....................................................251.000.00-1.00--------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTCTTG................................................291.000.00---1.00------------------
......................................................................................................................................................................TGAGCCAACTTTTTATTTTTATC.............................................................231.000.00----1.00-----------------
..............................................................................................................................................................................CTTTTTATTTTTATTTTTTATCAG....................................................241.000.00--1.00-------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTTCGC.....................................................241.000.00-1.00--------------------
............................................................................................................................................................................AACTTTTTATTTTTATTTTTTATTCTAG..................................................281.000.00----1.00-----------------
..............................................................................................................TAAAGTAGACATGTATAGAAGGCA....................................................................................................................2411.001.00--------------1.00-------
....................................................................................................................................................................................ATTTTTATTTTTTATTTTAGACTCG.............................................251.000.00-1.00--------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTG...................................................261.000.00-1.00--------------------
...............................TGCTTTCTTTTTCCTTTTTGAG.....................................................................................................................................................................................................221.000.00-1.00--------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTTGT..................................................301.000.00--1.00-------------------
................................................................................................................................................................................TTTTATTTTTATTTTTTATTTTAGATTCGGG...........................................3111.001.00-1.00--------------------
....................................................................................................................................................................................................TTAGATTCGGGCGTACATGTGCAGGTTTG.........................2911.001.00----------1.00-----------
.................................................................................................................................................................................TTTATTTTTATTTTTTATTTTCCTC................................................251.000.00-1.00--------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATAG.....................................................271.000.00--1.00-------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTC...................................................261.000.00-1.00--------------------
.................................CTTTCTTTTTCCTTTTCCAG.....................................................................................................................................................................................................201.000.00--1.00-------------------
......................................................................................................................................................................TGAGCCAACTTTTTATTTTTATT.............................................................2311.001.00------1.00---------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTCTAG.......................................................221.000.00--1.00-------------------
.............................................................................................................................................................................................TTTTATTTTAGATTCGGGCGTACATGTGCAGG.............................3211.001.00---------------1.00------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTTAGG.....................................................241.000.00-1.00--------------------
...........................................................................................................................................................................CAACTTTTTATTTTTATTTTTTATTTTAG..................................................2911.001.001.00---------------------
............................................................................................................................................................................................TTTTTATTTTAGATTCGGGCGTACAT....................................2611.001.00-----------1.00----------
............................................................................................................................................................................AACTTTTTATTTTTATTTACTG........................................................221.000.00---1.00------------------
.........................................................................................................................TGTATAGAAGGCAACAGTAG.............................................................................................................2011.001.00------------1.00---------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTCAG.........................................................231.000.00--1.00-------------------
..............................................................................................................................................................................CTTTTTATTTTTATTTTTTATTTTTCG.................................................271.000.00--1.00-------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTCAG......................................................231.000.00-1.00--------------------
............................................................................................................................................................................AACTTTTTATTTTTATTTTTTATTTTAG..................................................2811.001.00-1.00--------------------
..................................................................................................................................................................................................................ACATGTGCAGGTTTGTTACGGGT.................231.000.00-1.00--------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTTGG.................................................281.000.00-1.00--------------------
.......................................................................................................................................................................................................GATTCGGGCGTACATGTGCAGGT............................2311.001.00----------------1.00-----
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTTCCA.....................................................241.000.00-1.00--------------------
.................................CTTTCTTTTTCCTTTTCGTGG....................................................................................................................................................................................................211.000.00--1.00-------------------
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATTTTA...................................................2911.001.00--1.00-------------------
............................................................................................................................................................................AACTTTTTATTTTTATTTTTTATTTTCTTG................................................301.000.00---1.00------------------
...............................................................................................................................................................................TTTTTATTTTTATTTTTTATTTTATATG...............................................281.000.001.00---------------------
..............................................................................................................................................................................CTTTTTATTTTTATTTTGGGA.......................................................211.000.00------------------1.00---
..........................................................................................................................................................................CCAACTTTTTATTTTTATTTTTTATCTAG...................................................291.000.00---1.00------------------
.............................................................................................................................................................................ACTTTTTATTTTTATTTTTTATTTTCGAG................................................291.000.00-1.00--------------------
.................................CTTTCTTTTTCCTTTTCCTGT....................................................................................................................................................................................................2120.500.50-------------------0.50--
..............................................................................................................................................................................................................................TTGTTACGTGGATGTA............1630.330.33--------------------0.33-
...............................................................................................................................................................................TTTTTATTTTTATTTTTTATTTTAG..................................................2570.290.29---0.14-0.14----------------
...................................TTCTTTTTCCTTTTCCTG.....................................................................................................................................................................................................1860.170.17--0.17-------------------

Antisense strand
GAGTATTAAAGTCTTTTTTCTCAGCCAACTGTGCTTTCTTTTTCCTTTTCCTGTCTGTAAACAGAGTTTATAGCTCTTATAAACAGCTCTTATAGGAAGCTTTCCATTTCTAAAGTAGACATGTATAGAAGGCAACAGTAGGTTTGCCTTTTTATATTAAACTATGTGAGCCAACTTTTTATTTTTATTTTTTATTTTAGATTCGGGCGTACATGTGCAGGTTTGTTACGTGGATGTATTACATATACTG
.............................................................................................................((((((((((.(((((.(((((((((........))))))))))))))........((......))...............))))))))))..................................................
.......................................................................................................104.............................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR343334SRR037936(GSM510474)
293cand1. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)		SRR189782
.......................................................TGTAAACAGAGTTTAAATG................................................................................................................................................................................ 191.000.00--------1.00-------------
......................................................................................................................................................ACATAGTTTAATATAAA................................................................................... 1780.120.12---------------------0.12