ID: uc001tbf.2_intron_4_0_chr12_89998124_r.5p
GENE: (8)
chr12:90003514-90003763-


(4)
B-CELL 		(4)
BRAIN 		(2)
BREAST 		(9)
CELL-LINE 		(2)
HEART 		(2)
HELA 		(1)
LIVER 		(1)
OTHER 		(5)
SKIN 		(1)
TESTES

Sense strand
GTACAAATGATGGCCCAGCACTAAAGAAAGCAGATGTTGGATTTGCAATGGTAAGAATTTACTCATTCAAATATCCAAACGTAATTTACTGACTGGTTTGTTTGTTTGTTTGTTTGTTTGTTGACTAAATTACTATGGATTTTAAACACTGTCCCTCAAGATTAGTTCGAGGGATAATTAATAAGCTTAAATTGGTTTATAAGTCTAATTAGTTTATGCATTAGCTTTATTTGATGTCATGAAATCTGAC
...................................................................................................(((((...((..((..(((((.....)))))....))..))..))))).......................................................................................................
...................................................................................................100........................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
........................................................................................................TTTGTTTGTTTGTTTGTTGAATC...........................................................................................................................236.000.00--6.00-----------------------------
......................AAAGAAAGCAGATGTTGGATT...............................................................................................................................................................................................................2115.005.00----------2.00-------1.001.00----1.00-------
................................................................................................TTTGTTTGTTTGTTTGTTTGTCTCG.................................................................................................................................254.000.004.00-------------------------------
................................................................................................TTTGTTTGTTTGTTTGTTTGTCCTT.................................................................................................................................254.000.00-4.00------------------------------
.................................................................................................TTGTTTGTTTGTTTGTTTGTCTCG.................................................................................................................................244.000.002.002.00------------------------------
....................CTAAAGAAAGCAGATGTTGGAT................................................................................................................................................................................................................2213.003.00-----3.00--------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTTGTCTT..............................................................................................................................313.000.003.00-------------------------------
................................GATGTTGGATTTGCAATG........................................................................................................................................................................................................1813.003.00-------2.00---1.00--------------------
..............................................................................................GGTTTGTTTGTTTGTTTGTTTGTTTCCAT...............................................................................................................................293.000.00---3.00----------------------------
........GATGGCCCAGCACTAAAGAAAGCA..........................................................................................................................................................................................................................2412.002.00--------2.00-----------------------
.............................................................................................TGGTTTGTTTGTTTGTTCTC.........................................................................................................................................202.000.002.00-------------------------------
................................................................................................TTTGTTTGTTTGTTTGTTTGTCTAC.................................................................................................................................252.000.00-2.00------------------------------
..................................................................................................TGTTTGTTTGTTTGTTTGTTTGTTGGCC............................................................................................................................282.000.001.001.00------------------------------
........................AGAAAGCAGATGTTGGATTT..............................................................................................................................................................................................................2012.002.00----2.00---------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTCACC....................................................................................................................................252.000.00-2.00------------------------------
...............................................................................................GTTTGTTTGTTTGTTTGTTTGTTTGTTGCAT............................................................................................................................311.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTAAGG...................................................................................................................................261.000.00-1.00------------------------------
.....................TAAAGAAAGCAGATGTTGGATTT..............................................................................................................................................................................................................2311.001.00----1.00---------------------------
............................AGCAGATGTTGGATTTGCAATG........................................................................................................................................................................................................2211.001.00----------------------1.00---------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTTTTAG...............................................................................................................................301.000.001.00-------------------------------
........................AGAAAGCAGATGTTGGATTTG.............................................................................................................................................................................................................2111.001.00---------------1.00----------------
.....................................................................................................TTGTTTGTTTGTTTGTTTGTTGCGGG...........................................................................................................................261.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTTTCC................................................................................................................................291.000.00-1.00------------------------------
....................CTAAAGAAAGCAGATGTTGGATTTG.............................................................................................................................................................................................................2511.001.00---------1.00----------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTTCTTG...............................................................................................................................301.000.00-1.00------------------------------
.....AATGATGGCCCAGCACTAAAGA...............................................................................................................................................................................................................................2211.001.00------------1.00-------------------
...........................................................................................ACTGGTTTGTTTGTTTGTTTGG.........................................................................................................................................221.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGCC....................................................................................................................................251.000.00-1.00------------------------------
......................AAAGAAAGCAGATGTTATTA................................................................................................................................................................................................................201.000.00---------------------------1.00----
................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTGC.............................................................................................................................291.000.001.00-------------------------------
..........................................................................................GACTGGTTTGTTTGTTTGTTATC.........................................................................................................................................231.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTCTCT....................................................................................................................................251.000.001.00-------------------------------
................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCCTG.............................................................................................................................291.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTTGGTC...............................................................................................................................301.000.00-1.00------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTCGG.........................................................................................................................................201.000.00-1.00------------------------------
.................................................................................................TTGTTTGTTTGTTTGTTTGTTTGTCCGC.............................................................................................................................281.000.00-1.00------------------------------
.......................................................................................................................................TGGATTTTAAACACTGATT................................................................................................191.000.00--------------------1.00-----------
...................................GTTGGATTTGCAATGGGT.....................................................................................................................................................................................................181.000.00--------------------------1.00-----
...........................................................................................ACTGGTTTGTTTGTTTCAG............................................................................................................................................191.000.00-1.00------------------------------
.................................ATGTTGGATTTGCAATG........................................................................................................................................................................................................1721.001.00---------1.00----------------------
.................................................................................................TTGTTTGTTTGTTTGTTTGTTTGTCTCG.............................................................................................................................281.000.00-1.00------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTCTC....................................................................................................................................251.000.00-1.00------------------------------
.....................................................................................................TTGTTTGTTTGTTTGTTTGTTGACT............................................................................................................................2511.001.00-1.00------------------------------
.....................................................................................................TTGTTTGTTTGTTTGTTTGTTGGTTC...........................................................................................................................261.000.001.00-------------------------------
..................................................................................................TGTTTGTTTGTTTGTTTGTTTGTCTGC.............................................................................................................................271.000.001.00-------------------------------
............................................................................................CTGGTTTGTTTGTTTGTTTGGAGC......................................................................................................................................241.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTTCGG................................................................................................................................291.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTCC.....................................................................................................................................241.000.001.00-------------------------------
................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTGG.............................................................................................................................291.000.00-1.00------------------------------
...CAAATGATGGCCCAGCACTAAAGAAAGCAGATGT.....................................................................................................................................................................................................................3411.001.00---------------------1.00----------
...............................................................................................GTTTGTTTGTTTGTTTGTTTGTTTGTCTGC.............................................................................................................................301.000.001.00-------------------------------
...........................................................................................ACTGGTTTGTTTGTTTGTTTGTTTGGC....................................................................................................................................271.000.00-1.00------------------------------
...............................................................................................GTTTGTTTGTTTGTTTGTTTGTTTGTTGGCC............................................................................................................................311.000.00----------------------------1.00---
..............................................................................................GGTTTGTTTGTTTGTTTGTTTGTTTATC................................................................................................................................281.000.00-1.00------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTTCATC...............................................................................................................................301.000.001.00-------------------------------
............................................................................................CTGGTTTGTTTGTTTGTTTGTTTGTC....................................................................................................................................261.000.00-1.00------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTCCG.................................................................................................................................281.000.00-1.00------------------------------
....................................................................................................TTTGTTTGTTTGTTTGTTTGTTGCTC............................................................................................................................261.000.00-1.00------------------------------
..............................................................................................GGTTTGTTTGTTTGTTTGTTTCTCC...................................................................................................................................251.000.00-1.00------------------------------
...........................AAGCAGATGTTGGATTTG.............................................................................................................................................................................................................1811.001.00-------------------------1.00------
........................AGAAAGCAGATGTTGGATT...............................................................................................................................................................................................................1911.001.00-----------------1.00--------------
............................AGCAGATGTTGGATTTGCTTT.........................................................................................................................................................................................................211.000.00-------------1.00------------------
......................AAAGAAAGCAGATGTTGGATTTG.............................................................................................................................................................................................................2311.001.00--------------1.00-----------------
..............................................................................................GGTTTGTTTGTTTGTTTGTTTGTTCTTG................................................................................................................................281.000.001.00-------------------------------
..........TGGCCCAGCACTAAAGAAAGCAGATGTCGGA.................................................................................................................................................................................................................311.000.001.00-------------------------------
................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTTA.............................................................................................................................291.000.001.00-------------------------------
................................................................................................TTTGTTTGTTTGTTTGTTTGTTTGTCTCC.............................................................................................................................291.000.001.00-------------------------------
............................................................................................CTGGTTTGTTTGTTTGTTTGTTTTACC...................................................................................................................................271.000.00---1.00----------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTCTC..................................................................................................................................271.000.00-1.00------------------------------
........................AGAAAGCAGATGTTGGAT................................................................................................................................................................................................................1811.001.00-----------------------------1.00--
..................CACTAAAGAAAGCAGATGTTGGATT...............................................................................................................................................................................................................2511.001.00-----------------------1.00--------
...........................................................................................ACTGGTTTGTTTGTTTGTTTGTTTGTTCCTG................................................................................................................................311.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTTGTTC................................................................................................................................291.000.00-1.00------------------------------
...........................................................................................ACTGGTTTGTTTGTTTGTTTGTTTGTTTT..................................................................................................................................291.000.00-1.00------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGTCCG..................................................................................................................................271.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTCTTA...................................................................................................................................261.000.001.00-------------------------------
.............................................................................................TGGTTTGTTTGTTTGTTTGTTTGCTC...................................................................................................................................261.000.001.00-------------------------------
...........................................................................................ACTGGTTTGTTTGTTTGTTTCAG........................................................................................................................................231.000.00-1.00------------------------------
...........................................................................................ACTGGTTTGTTTGTTAGT.............................................................................................................................................181.000.00---1.00----------------------------
...............................................................................................GTTTGTTTGTTTGTTTGTTTGTTTGTCC...............................................................................................................................281.000.00---1.00----------------------------
..................................TGTTGGATTTGCAATG........................................................................................................................................................................................................1620.500.50-----------0.50--------------------
..............................CAGATGTTGGATTTGC............................................................................................................................................................................................................1620.500.50------------------------------0.50-
...........................................................................................ACTGGTTTGTTTGTTTGTTTGT.........................................................................................................................................2290.440.440.220.22------------------------------
.................................ATGTTGGATTTGCAAT.........................................................................................................................................................................................................1640.250.25-------------------------------0.25
........................................................................................................TTTGTTTGTTTGTTTGTTGAC.............................................................................................................................2180.120.12-0.12------------------------------

Antisense strand
GTACAAATGATGGCCCAGCACTAAAGAAAGCAGATGTTGGATTTGCAATGGTAAGAATTTACTCATTCAAATATCCAAACGTAATTTACTGACTGGTTTGTTTGTTTGTTTGTTTGTTTGTTGACTAAATTACTATGGATTTTAAACACTGTCCCTCAAGATTAGTTCGAGGGATAATTAATAAGCTTAAATTGGTTTATAAGTCTAATTAGTTTATGCATTAGCTTTATTTGATGTCATGAAATCTGAC
...................................................................................................(((((...((..((..(((((.....)))))....))..))..))))).......................................................................................................
...................................................................................................100........................................................158..........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR191624(GSM715734)
31genomic small RNA (size selected RNA from t. (breast)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................CTGTCCCTCAAGATTAGA.................................................................................... 182.000.00------2.00-------------------------
............................................................................................................................CTAAATTACTATGGATTCTT.......................................................................................................... 201.000.00----------------1.00---------------