uc001tar.2_intron_35_0_chr12_88508960

GAGAAAGTGGGATTAAGATCACCATCTGCTTTACTGTTTAGATTTTAGTTTATTTTTATGATTGCTGCTATGTCTTCATAGCTCGTTTTTTTTGTTTTGTTTTGTTATACTTAATTGATCAAACTTTTCTTAACTTGAAAATTATAGACTTGTGATATTTTGTTGAAAAAAATCAATTTTATTCTCTCTGCTTTTTTCAGAATGAATTTCTTTCAAGAGAACTAATTGAAAAAGAAAGAGATTTAGAAAG ....................................................................................(((......((((.(((..((((....)))).))).)))).......))).((((((...((((.....((((....(((((......)))))..))))...))))...))))))................................................... .............................................................................78........................................................................................................................200................................................	Size	Perfect hit	Total Norm	Perfect Norm	SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)	SRR207110(GSM721072) Nuclear RNA. (cell line)	TAX577745(Rovira) total RNA. (breast)	GSM450606(GSM450606) miRNA sequencing raw reads from post-mortem s. (brain)	SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line)	SRR330891(SRX091729) tissue: skin psoriatic uninvolveddisease stat. (skin)	SRR189782	SRR037937(GSM510475) 293cand2. (cell line)	SRR326280(GSM769510) total cell content of unperturbed cells was s. (cell line)	SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..................................................................................TCGTTTTTTTTGTTTTGTTTTGGTT...............................................................................................................................................	25		39.00	0.00	26.00	13.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................	25		24.00	0.00	7.00	16.00	1.00	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTTGG.................................................................................................................................................	23		21.00	0.00	7.00	14.00	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................	26		21.00	0.00	15.00	5.00	1.00	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTGTCG............................................................................................................................................	26		10.00	0.00	7.00	3.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTGTCG............................................................................................................................................	25		10.00	0.00	6.00	4.00	-	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................	24		8.00	0.00	3.00	5.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTGTC.............................................................................................................................................	24		6.00	0.00	4.00	2.00	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTGCT.............................................................................................................................................	25		5.00	0.00	3.00	2.00	-	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTGTCG............................................................................................................................................	24		5.00	0.00	3.00	2.00	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTGTC.............................................................................................................................................	25		4.00	0.00	3.00	1.00	-	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTTGGTTT..............................................................................................................................................	26		4.00	0.00	4.00	-	-	-	-	-	-	-	-	-	-	-
...................................................................................CGTTTTTTTTGTTTTGTTTTGG.................................................................................................................................................	22		3.00	0.00	1.00	2.00	-	-	-	-	-	-	-	-	-	-
...................................................................................CGTTTTTTTTGTTTTGTTTTGGT................................................................................................................................................	23		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-
.................................................................................CTCGTTTTTTTTGTTTTGTTTTGG.................................................................................................................................................	24		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTATAATC..........................................................................................................................................	26		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTCTTC............................................................................................................................................	24		2.00	0.00	-	2.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTCT............................................................................................................................................	25		2.00	0.00	-	1.00	1.00	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTTGGT................................................................................................................................................	24		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTGC..............................................................................................................................................	24		2.00	0.00	2.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTCTGG.................................................................................................................................................	23		2.00	0.00	1.00	1.00	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTGCCG............................................................................................................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTCGGG............................................................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTCG..............................................................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.............................................................................ATAGCTCGTTTTTTTTGTTTTGTTTTGTCAC..............................................................................................................................................	31		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTGG..................................................................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.................................................................................CTCGTTTTTTTTGTTTTGTTTTGGTT...............................................................................................................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................TTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTGGTG............................................................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................TTTTTGTTTTGTTTTGTTAGGAG...........................................................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..............................................................................TAGCTCGTTTTTTTTGTTTTGTTTTGCT................................................................................................................................................	28		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTTC............................................................................................................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTAGAG................................................................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTCGT...................................................................................................................................................	19		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.AGAAAGTGGGATTAAGA........................................................................................................................................................................................................................................	17	1	1.00	1.00	-	-	-	-	1.00	-	-	-	-	-	-	-
................................ACTGTTTAGATTTTAGTT........................................................................................................................................................................................................	18	2	1.00	1.00	-	-	-	-	-	-	-	1.00	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTTGCT................................................................................................................................................	24		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
................................................................................................................................................................................TTTTATTCTCTCTGCTTTTTTCAG..................................................	24	1	1.00	1.00	-	-	-	-	-	-	-	-	-	-	1.00	-
....................................................................................GTTTTTTTTGTTTTGTTTCGG.................................................................................................................................................	21		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTGTC.............................................................................................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
...............................................................................AGCTCGTTTTTTTTGTTTTGTTTCGTT................................................................................................................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.......................................................................................................................................................................................CTCTCTGCTTTTTTCAACC................................................	19		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
.AGAAAGTGGGATTAACCGA......................................................................................................................................................................................................................................	19		1.00	0.00	-	-	-	-	-	-	-	-	1.00	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTGG............................................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
................................................................................GCTCGTTTTTTTTGTTTTGTTTTGTTTTG.............................................................................................................................................	29		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTCGGT................................................................................................................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTAGAC............................................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCCGG............................................................................................................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTCTG.............................................................................................................................................	25		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
.................................................................................CTCGTTTTTTTTGTTTTGTTTTGGTTT..............................................................................................................................................	27		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
......................................................................................................................TCAAACTTTTCTTAATTGA.................................................................................................................	19		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
......................................................................................TTTTTTTGTTTTGTTTTGTTCGAG............................................................................................................................................	24		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTCGCC............................................................................................................................................	26		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
........................................................................................TTTTTGTTTTGTTTTGTTACGTT...........................................................................................................................................	23		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCGCC............................................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.................................................................................CTCGTTTTTTTTGTTTTGTTCTG..................................................................................................................................................	23		1.00	0.00	-	-	1.00	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCG..............................................................................................................................................	23		1.00	0.00	1.00	-	-	-	-	-	-	-	-	-	-	-
..................................................................................TCGTTTTTTTTGTTTTGTTTGC..................................................................................................................................................	22		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTCA............................................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
....................................................................................GTTTTTTTTGTTTTGTTTTGTTGTA.............................................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-
.....................................................................................TTTTTTTTGTTTTGTTTTGTTCGTT............................................................................................................................................	25		1.00	0.00	-	1.00	-	-	-	-	-	-	-	-	-	-

GAGAAAGTGGGATTAAGATCACCATCTGCTTTACTGTTTAGATTTTAGTTTATTTTTATGATTGCTGCTATGTCTTCATAGCTCGTTTTTTTTGTTTTGTTTTGTTATACTTAATTGATCAAACTTTTCTTAACTTGAAAATTATAGACTTGTGATATTTTGTTGAAAAAAATCAATTTTATTCTCTCTGCTTTTTTCAGAATGAATTTCTTTCAAGAGAACTAATTGAAAAAGAAAGAGATTTAGAAAG
....................................................................................(((......((((.(((..((((....)))).))).)))).......))).((((((...((((.....((((....(((((......)))))..))))...))))...))))))...................................................
.............................................................................78........................................................................................................................200................................................

Size

Perfect hit

Total Norm

Perfect Norm

SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

SRR207110(GSM721072)
Nuclear RNA. (cell line)

TAX577745(Rovira)
total RNA. (breast)

GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)

SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)

SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)

SRR189782

SRR037937(GSM510475)
293cand2. (cell line)

SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)

SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)

..................................................................................TCGTTTTTTTTGTTTTGTTTTGGTT...............................................................................................................................................

39.00

0.00

26.00

13.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................

24.00

0.00

7.00

16.00

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTTGG.................................................................................................................................................

21.00

0.00

7.00

14.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................

21.00

0.00

15.00

5.00

1.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTGTCG............................................................................................................................................

10.00

0.00

7.00

3.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTGTCG............................................................................................................................................

10.00

0.00

6.00

4.00

......................................................................................TTTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................

8.00

0.00

3.00

5.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTGTC.............................................................................................................................................

6.00

0.00

4.00

2.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTGCT.............................................................................................................................................

5.00

0.00

3.00

2.00

......................................................................................TTTTTTTGTTTTGTTTTGTTGTCG............................................................................................................................................

5.00

0.00

3.00

2.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTGTC.............................................................................................................................................

4.00

0.00

3.00

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTTGGTTT..............................................................................................................................................

4.00

0.00

4.00

...................................................................................CGTTTTTTTTGTTTTGTTTTGG.................................................................................................................................................

3.00

0.00

1.00

2.00

...................................................................................CGTTTTTTTTGTTTTGTTTTGGT................................................................................................................................................

2.00

0.00

1.00

.................................................................................CTCGTTTTTTTTGTTTTGTTTTGG.................................................................................................................................................

2.00

0.00

2.00

......................................................................................TTTTTTTGTTTTGTTTTGTTATAATC..........................................................................................................................................

2.00

0.00

2.00

......................................................................................TTTTTTTGTTTTGTTTTGTTCTTC............................................................................................................................................

2.00

0.00

2.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTCT............................................................................................................................................

2.00

0.00

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTTGGT................................................................................................................................................

2.00

0.00

1.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTGC..............................................................................................................................................

2.00

0.00

2.00

..................................................................................TCGTTTTTTTTGTTTTGTTCTGG.................................................................................................................................................

2.00

0.00

1.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTGCCG............................................................................................................................................

1.00

0.00

1.00

......................................................................................TTTTTTTGTTTTGTTTTGTTCGGG............................................................................................................................................

1.00

0.00

1.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTCG..............................................................................................................................................

1.00

0.00

1.00

.............................................................................ATAGCTCGTTTTTTTTGTTTTGTTTTGTCAC..............................................................................................................................................

1.00

0.00

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTGG..................................................................................................................................................

1.00

0.00

1.00

.................................................................................CTCGTTTTTTTTGTTTTGTTTTGGTT...............................................................................................................................................

1.00

0.00

1.00

.......................................................................................TTTTTTGTTTTGTTTTGTTGCTG............................................................................................................................................

1.00

0.00

1.00

......................................................................................TTTTTTTGTTTTGTTTTGTTGGTG............................................................................................................................................

1.00

0.00

1.00

........................................................................................TTTTTGTTTTGTTTTGTTAGGAG...........................................................................................................................................

1.00

0.00

1.00

..............................................................................TAGCTCGTTTTTTTTGTTTTGTTTTGCT................................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTTC............................................................................................................................................

1.00

0.00

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTAGAG................................................................................................................................................

1.00

0.00

1.00

....................................................................................GTTTTTTTTGTTTTGTCGT...................................................................................................................................................

1.00

0.00

1.00

.AGAAAGTGGGATTAAGA........................................................................................................................................................................................................................................

1.00

................................ACTGTTTAGATTTTAGTT........................................................................................................................................................................................................

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTTGCT................................................................................................................................................

1.00

0.00

1.00

................................................................................................................................................................................TTTTATTCTCTCTGCTTTTTTCAG..................................................

1.00

....................................................................................GTTTTTTTTGTTTTGTTTCGG.................................................................................................................................................

1.00

0.00

1.00

......................................................................................TTTTTTTGTTTTGTTTTGTTGTC.............................................................................................................................................

1.00

0.00

1.00

...............................................................................AGCTCGTTTTTTTTGTTTTGTTTCGTT................................................................................................................................................

1.00

0.00

1.00

.......................................................................................................................................................................................CTCTCTGCTTTTTTCAACC................................................

1.00

0.00

1.00

.AGAAAGTGGGATTAACCGA......................................................................................................................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTGG............................................................................................................................................

1.00

0.00

1.00

................................................................................GCTCGTTTTTTTTGTTTTGTTTTGTTTTG.............................................................................................................................................

1.00

0.00

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTCGGT................................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTAGAC............................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCCGG............................................................................................................................................

1.00

0.00

1.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTCTG.............................................................................................................................................

1.00

0.00

1.00

.................................................................................CTCGTTTTTTTTGTTTTGTTTTGGTTT..............................................................................................................................................

1.00

0.00

1.00

......................................................................................................................TCAAACTTTTCTTAATTGA.................................................................................................................

1.00

0.00

1.00

......................................................................................TTTTTTTGTTTTGTTTTGTTCGAG............................................................................................................................................

1.00

0.00

1.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTCGCC............................................................................................................................................

1.00

0.00

1.00

........................................................................................TTTTTGTTTTGTTTTGTTACGTT...........................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCGCC............................................................................................................................................

1.00

0.00

1.00

.................................................................................CTCGTTTTTTTTGTTTTGTTCTG..................................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCG..............................................................................................................................................

1.00

0.00

1.00

..................................................................................TCGTTTTTTTTGTTTTGTTTGC..................................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCTCA............................................................................................................................................

1.00

0.00

1.00

....................................................................................GTTTTTTTTGTTTTGTTTTGTTGTA.............................................................................................................................................

1.00

0.00

1.00

.....................................................................................TTTTTTTTGTTTTGTTTTGTTCGTT............................................................................................................................................

1.00

0.00

1.00