| (1) BREAST | (8) CELL-LINE | (1) HEART | (2) LIVER | (2) OTHER |
| ATGAGTGGGACTTTACCAAAGAAAGAAATCCTAGATGGCATCTAAATGAAGAAAGTCCTCTGCTTTTTGTGTTCTTTCTTTCACAGGAGAATACTATAAAAATATGAGAAGTTGCCTGAGCTACCCACTGCAAAGCATATGATTAGCCTTTATTTCCCTCATTTTATTACCAAAAGACCATCTTTTTTTTTTTTTTTCAGGCAACAGTTGCAGCTTTTGCAGCTAGTGAAGGCCACTCCCACCCTCGAGT ...............................................................................................................((((((((((((..((.(((...)))..))..))))........................(((((.....)))))..........)))))))).............................................. ...............................................................................................................112...........................................................................................206.......................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189786 | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR191589(GSM715699) 69genomic small RNA (size selected RNA from t. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCCAAG................................................ | 24 | 7.00 | 0.00 | 4.00 | 3.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTCAG................................................... | 22 | 4.00 | 0.00 | 3.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCCG.................................................. | 22 | 3.00 | 0.00 | 2.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCTAAG................................................ | 25 | 3.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCACTG................................................ | 24 | 2.00 | 0.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCG................................................... | 23 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTATTT................................................. | 25 | 2.00 | 0.00 | - | - | - | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTAAAG................................................... | 23 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCCAAG................................................ | 25 | 2.00 | 0.00 | - | 1.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTAAAG.................................................. | 24 | 2.00 | 0.00 | - | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCACTG................................................ | 25 | 2.00 | 0.00 | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACTAG............................................... | 23 | 2.00 | 0.00 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................TGAGCTACCCACTGCAAAGCTGA............................................................................................................... | 23 | 2.00 | 0.00 | - | - | - | - | - | - | - | - | 2.00 | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCTTTT................................................ | 25 | 2.00 | 0.00 | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTGC...................................................... | 20 | 2.00 | 0.00 | - | - | 2.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTCTCG................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTAAA................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCATCCG............................................... | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCCTTG................................................ | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTCTG.................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACACG............................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCTTTT................................................ | 26 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAAG.................................................. | 24 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGGGGG.............................................. | 24 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCAAGG................................................ | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTACTG.................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACCGG............................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTGTG..................................................... | 21 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTGTG................................................... | 23 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTAACC.................................................. | 23 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCAAT................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGGAG................................................ | 23 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCATTG................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ............................................................................................................................................................CCTCATTTTATTACCAAAAGA......................................................................... | 21 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGTTCC.............................................. | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGGAG............................................... | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCTTAA................................................ | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCACTTG............................................... | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTCTCG.................................................. | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCATTG................................................ | 26 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ........................................................................................................................................................................................TTTTTTTTTTTTTCAGGCGAGG............................................ | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTATTC................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTATG....................................................... | 19 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAAT.................................................. | 24 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAGGG................................................. | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCAAAG................................................ | 25 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................GAAAGAAATCCTAGATGGCATAAAC............................................................................................................................................................................................................. | 25 | 1.00 | 0.00 | - | - | - | - | - | - | - | - | - | 1.00 | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTCCG...................................................... | 20 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGGCGAG............................................. | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTATC................................................... | 22 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGGCGAGG............................................ | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTATG................................................... | 22 | 1.00 | 0.00 | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCTG.................................................. | 24 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTCTCG.................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGGCT................................................ | 23 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCTTTG................................................ | 26 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGCC................................................. | 22 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........................................................................................................................................................................................................AACAGTTGCAGCTTTTGC.............................. | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - | - |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTCTTG.................................................. | 24 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACTTG............................................... | 23 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGGCAGAAG........................................... | 25 | 1.00 | 0.00 | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTCAC...................................................... | 20 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAT................................................... | 23 | 1.00 | 0.00 | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAAATG............................................... | 25 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ......................................................................................................................................................................................................................TTTTGCAGCTAGTGAAGGCCACTCCCACC....... | 29 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | 1.00 | - |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAATT................................................. | 25 | 1.00 | 0.00 | - | - | - | - | 1.00 | - | - | - | - | - | - | - | - | - | |
| ....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGTTGT.............................................. | 24 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..........CTTTACCAAAGAAAGTC............................................................................................................................................................................................................................... | 17 | 1.00 | 0.00 | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | - | |
| ................................................................................................................................................................................ACCATCTTTTTTTTTTTTTCTTG................................................... | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCAGCAGT.............................................. | 25 | 1.00 | 0.00 | - | - | 1.00 | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCACG................................................. | 23 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| .........................................................................................................................................................................................TTTTTTTTTTTTCAGGCGGGT............................................ | 21 | 1.00 | 0.00 | 1.00 | - | - | - | - | - | - | - | - | - | - | - | - | - | |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAGG................................................. | 23 | 2 | 0.50 | 0.50 | - | - | - | 0.50 | - | - | - | - | - | - | - | - | - | - |
| ......GGGACTTTACCAAAGAAA.................................................................................................................................................................................................................................. | 18 | 2 | 0.50 | 0.50 | - | - | - | - | - | - | - | - | - | - | - | - | - | 0.50 |
| .................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCAG.................................................. | 23 | 3 | 0.33 | 0.33 | 0.33 | - | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAG.................................................. | 22 | 6 | 0.17 | 0.17 | - | 0.17 | - | - | - | - | - | - | - | - | - | - | - | - |
| ..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAGCAG............................................... | 25 | 6 | 0.17 | 0.17 | - | - | - | 0.17 | - | - | - | - | - | - | - | - | - | - |
| ATGAGTGGGACTTTACCAAAGAAAGAAATCCTAGATGGCATCTAAATGAAGAAAGTCCTCTGCTTTTTGTGTTCTTTCTTTCACAGGAGAATACTATAAAAATATGAGAAGTTGCCTGAGCTACCCACTGCAAAGCATATGATTAGCCTTTATTTCCCTCATTTTATTACCAAAAGACCATCTTTTTTTTTTTTTTTCAGGCAACAGTTGCAGCTTTTGCAGCTAGTGAAGGCCACTCCCACCCTCGAGT ...............................................................................................................((((((((((((..((.(((...)))..))..))))........................(((((.....)))))..........)))))))).............................................. ...............................................................................................................112...........................................................................................206.......................................... | Size | Perfect hit | Total Norm | Perfect Norm | SRR189778(GSM714638) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189777(GSM714637) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189780(GSM714640) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189776(GSM714636) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189775(GSM714635) cell line: HEK293clip variant: CLIPenzymatic . (cell line) | SRR189779(GSM714639) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189781(GSM714641) cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line) | SRR189782 | SRR189786 | DRR000555(DRX000313) "THP-1 whole cell RNA, no treatment". (cell line) | SRR342896(SRX096792) small RNA seq of Right atrial tissue. (heart) | SRR039623(GSM531986) HCV(+) HCC Tissue Sample. (liver) | SRR039624(GSM531987) HBV(-) HCV(-) Adjacent Tissue Sample. (liver) | SRR191589(GSM715699) 69genomic small RNA (size selected RNA from t. (breast) |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| ..........................................................................................................................................................................................................AACAGTTGCAGCTTTTGCTG............................ | 20 | 1.00 | 0.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - | |
| .........................................................................................................................................................................................................CAAAAGCTGCAACTGTTG............................... | 18 | 1 | 1.00 | 1.00 | - | - | - | - | - | - | - | 1.00 | - | - | - | - | - | - |