ID: uc001szk.1_intron_2_0_chr12_81239719_r.3p
GENE: LIN7A(4)
chr12:81239669-81239918-


(1)
BREAST
(8)
CELL-LINE
(1)
HEART
(2)
LIVER
(2)
OTHER

Sense strand
ATGAGTGGGACTTTACCAAAGAAAGAAATCCTAGATGGCATCTAAATGAAGAAAGTCCTCTGCTTTTTGTGTTCTTTCTTTCACAGGAGAATACTATAAAAATATGAGAAGTTGCCTGAGCTACCCACTGCAAAGCATATGATTAGCCTTTATTTCCCTCATTTTATTACCAAAAGACCATCTTTTTTTTTTTTTTTCAGGCAACAGTTGCAGCTTTTGCAGCTAGTGAAGGCCACTCCCACCCTCGAGT
...............................................................................................................((((((((((((..((.(((...)))..))..))))........................(((((.....)))))..........))))))))..............................................
...............................................................................................................112...........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR189786DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCCAAG................................................247.000.004.003.00------------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTCAG...................................................224.000.003.001.00------------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCCG..................................................223.000.002.001.00------------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCTAAG................................................253.000.001.001.00----1.00-------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCACTG................................................242.000.00-1.00--1.00---------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCG...................................................232.000.002.00-------------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTATTT.................................................252.000.00---1.001.00---------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTAAAG...................................................232.000.00---2.00----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCCAAG................................................252.000.00-1.00--1.00---------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTAAAG..................................................242.000.00---2.00----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCACTG................................................252.000.002.00-------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACTAG...............................................232.000.001.001.00------------
....................................................................................................................TGAGCTACCCACTGCAAAGCTGA...............................................................................................................232.000.00--------2.00-----
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCTTTT................................................252.000.00-2.00------------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTGC......................................................202.000.00--2.00-----------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTCTCG...................................................231.000.00-1.00------------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTAAA...................................................231.000.00---1.00----------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCATCCG...............................................241.000.001.00-------------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCCTTG................................................241.000.00-1.00------------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTCTG....................................................221.000.00-1.00------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACACG...............................................231.000.00----1.00---------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCTTTT................................................261.000.00--1.00-----------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAAG..................................................241.000.00----1.00---------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGGGGG..............................................241.000.00-----1.00--------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCAAGG................................................231.000.00--1.00-----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTACTG..................................................231.000.001.00-------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACCGG...............................................231.000.00------1.00-------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTGTG.....................................................211.000.00----1.00---------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTGTG...................................................231.000.00---1.00----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTAACC..................................................231.000.00------1.00-------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCAAT.................................................241.000.001.00-------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGGAG................................................231.000.00--1.00-----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCATTG................................................251.000.00-1.00------------
............................................................................................................................................................CCTCATTTTATTACCAAAAGA.........................................................................2111.001.00----------1.00---
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGTTCC..............................................241.000.00--1.00-----------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGGAG...............................................231.000.00-----1.00--------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCTTAA................................................251.000.001.00-------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCACTTG...............................................241.000.00--1.00-----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTCTCG..................................................231.000.00-1.00------------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCATTG................................................261.000.00---1.00----------
........................................................................................................................................................................................TTTTTTTTTTTTTCAGGCGAGG............................................221.000.00--1.00-----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTATTC...................................................221.000.00-1.00------------
................................................................................................................................................................................ACCATCTTTTTTTTTTATG.......................................................191.000.00---1.00----------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAAT..................................................241.000.00---1.00----------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAGGG.................................................251.000.00--1.00-----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCAAAG................................................251.000.00-1.00------------
....................GAAAGAAATCCTAGATGGCATAAAC.............................................................................................................................................................................................................251.000.00---------1.00----
................................................................................................................................................................................ACCATCTTTTTTTTTTTCCG......................................................201.000.00---1.00----------
......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGGCGAG.............................................231.000.00-----1.00--------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTATC...................................................221.000.00-1.00------------
......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGGCGAGG............................................241.000.00--1.00-----------
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTATG...................................................221.000.00---1.00----------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCTG..................................................241.000.00-1.00------------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTCTCG..................................................241.000.001.00-------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGGCT................................................231.000.00-----1.00--------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTCTTTG................................................261.000.001.00-------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCGCC.................................................221.000.00--1.00-----------
..........................................................................................................................................................................................................AACAGTTGCAGCTTTTGC..............................1811.001.00-----------1.00--
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTCTTG..................................................241.000.001.00-------------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCACTTG...............................................231.000.00----1.00---------
......................................................................................................................................................................................TTTTTTTTTTTTTTTCAGGCAGAAG...........................................251.000.00-----1.00--------
................................................................................................................................................................................ACCATCTTTTTTTTTTTCAC......................................................201.000.00-1.00------------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAT...................................................231.000.00-1.00------------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAAATG...............................................251.000.001.00-------------
......................................................................................................................................................................................................................TTTTGCAGCTAGTGAAGGCCACTCCCACC.......2911.001.00------------1.00-
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTTTAATT.................................................251.000.00----1.00---------
....................................................................................................................................................................................TCTTTTTTTTTTTTTTTCAGTTGT..............................................241.000.00--1.00-----------
..........CTTTACCAAAGAAAGTC...............................................................................................................................................................................................................................171.000.00------1.00-------
................................................................................................................................................................................ACCATCTTTTTTTTTTTTTCTTG...................................................231.000.001.00-------------
...................................................................................................................................................................................ATCTTTTTTTTTTTTTTTCAGCAGT..............................................251.000.00--1.00-----------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCACG.................................................231.000.001.00-------------
.........................................................................................................................................................................................TTTTTTTTTTTTCAGGCGGGT............................................211.000.001.00-------------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAGG.................................................2320.500.50---0.50----------
......GGGACTTTACCAAAGAAA..................................................................................................................................................................................................................................1820.500.50-------------0.50
.................................................................................................................................................................................CCATCTTTTTTTTTTTTTTTCAG..................................................2330.330.330.33-------------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAG..................................................2260.170.17-0.17------------
..................................................................................................................................................................................CATCTTTTTTTTTTTTTTTCAGCAG...............................................2560.170.17---0.17----------

Antisense strand
ATGAGTGGGACTTTACCAAAGAAAGAAATCCTAGATGGCATCTAAATGAAGAAAGTCCTCTGCTTTTTGTGTTCTTTCTTTCACAGGAGAATACTATAAAAATATGAGAAGTTGCCTGAGCTACCCACTGCAAAGCATATGATTAGCCTTTATTTCCCTCATTTTATTACCAAAAGACCATCTTTTTTTTTTTTTTTCAGGCAACAGTTGCAGCTTTTGCAGCTAGTGAAGGCCACTCCCACCCTCGAGT
...............................................................................................................((((((((((((..((.(((...)))..))..))))........................(((((.....)))))..........))))))))..............................................
...............................................................................................................112...........................................................................................206..........................................
SizePerfect hitTotal NormPerfect NormSRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR189782SRR189786DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)
..........................................................................................................................................................................................................AACAGTTGCAGCTTTTGCTG............................ 201.000.00-------1.00------
.........................................................................................................................................................................................................CAAAAGCTGCAACTGTTG............................... 1811.001.00-------1.00------