ID: uc001sxq.1_intron_0_0_chr12_75785131_f.5p
GENE: GLIPR1L2(1)
chr12:75785081-75785330+


(9)
B-CELL 		(4)
BREAST 		(14)
CELL-LINE 		(2)
HEART 		(1)
HELA 		(2)
OTHER 		(1)
RRP40.ip 		(9)
SKIN 		(1)
XRN.ip

Sense strand
ATGAGCTGCGGGGCGACGTCATTCCCCGAGGGTCTAACTTGCGCTTCATGGTGAGGCCGGAAGGCGGTTTGCCGACCCTTCCACTACCGTTGCCACAACGCCTCCCTGGATCTCGGGTAGTTGGGGCCACTGCTCTGAGGCTGAAGGATCGCGGAGAACCGCACTTTTAGCTTGGTTTTTAAAGTACACGTGAAGTTTACACAGAGAAAAACTGCGGACACTCTAACACATGCTTATTACCATGATATTA
.....................................................................................................((((.(((.(((..(((..(((((((....))))))).)))..))).))).))))..............................................................................................
....................................................................................................101........................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
................................................TGGTGAGGCCGGAAGGC.........................................................................................................................................................................................1713.003.003.00----------------------------------------
......................................................................................................................................CTGAGGCTGAAGGATCGCGGAG..............................................................................................2213.003.00----3.00------------------------------------
................................................................................................................................ACTGCTCTGAGGCTGAAGGA......................................................................................................2013.003.00---2.00-------------------------------1.00-----
............................................................................................................................................CTGAAGGATCGCGGAGAA............................................................................................1813.003.00-----2.00-----1.00-----------------------------
.........................................................................................................................................AGGCTGAAGGATCGCGGAG..............................................................................................1913.003.00-----1.00-----1.00--------1.00--------------------
...............................................ATGGTGAGGCCGGAAGGCGGT......................................................................................................................................................................................2113.003.00-3.00---------------------------------------
...................................................................................................................................GCTCTGAGGCTGAAGGAT.....................................................................................................1813.003.003.00----------------------------------------
............................................................................................................................................CTGAAGGATCGCGGAGAAC...........................................................................................1912.002.00--2.00--------------------------------------
..................................................................................................................................................................................................................ACTGCGGACACTCTAACACATG..................2212.002.00--2.00--------------------------------------
............................................................................................................................................CTGAAGGATCGCGGAGAACCG.........................................................................................2112.002.00---1.00---1.00---------------------------------
.................................................................................................................................CTGCTCTGAGGCTGAAGGATCGCG.................................................................................................2412.002.00-------------------------------------1.00-1.00-
.............................................................................................................ATCTCGGGTAGTTGGGGCC..........................................................................................................................1912.002.00---------1.00---------1.00---------------------
.........................................................................................................CTGGATCTCGGGTAGTTGGGG............................................................................................................................2112.002.00------2.00----------------------------------
..............................................................................................................................................GAAGGATCGCGGAGAAC...........................................................................................1711.001.00---------------------------------1.00-------
.............................................................................................................ATCTCGGGTAGTTGGGGC...........................................................................................................................1811.001.00--------------------------------------1.00--
.......................................................................................................................................TGAGGCTGAAGGATCGCG.................................................................................................1811.001.00------------------1.00----------------------
................................................TGGTGAGGCCGGAAGGCG........................................................................................................................................................................................1811.001.00----------------------------1.00------------
.........................................................................................................................................AGGCTGAAGGATCGCGGAGAACCGC........................................................................................2511.001.00---------1.00-------------------------------
.........................................................................................................................................AGGCTGAAGGATCGCGGAGAA............................................................................................2111.001.00---------------------1.00-------------------
...................................................................................................................................GCTCTGAGGCTGAAGGATCGCG.................................................................................................2211.001.00------------1.00----------------------------
...........................................................................................................................................GCTGAAGGATCGCGGAGAA............................................................................................1911.001.00-------1.00---------------------------------
.............................................................................................CACAACGCCTCCCTGGATCTCGGG.....................................................................................................................................2411.001.00-----------------------------1.00-----------
.....................................................................................................................................TCTGAGGCTGAAGGAGGGA..................................................................................................191.000.00--1.00--------------------------------------
.....................................................................................................................................TCTGAGGCTGAAGGATCGCGG................................................................................................2111.001.00--------1.00--------------------------------
...........................................................................................................................................GCTGAAGGATCGCGGACAA............................................................................................191.000.00-------1.00---------------------------------
................................................................................................................................ACTGCTCTGAGGCTGAAGGATC....................................................................................................2211.001.00---1.00-------------------------------------
..............................................................................................................TCTCGGGTAGTTGGGGCCACTGCT....................................................................................................................2411.001.00-------------------------------1.00---------
..................................................................................................................................................................................................................ACTGCGGACACTCTAACA......................1811.001.00-1.00---------------------------------------
..............................................CATGGTGAGGCCGGAAGGCGGTTTGC..................................................................................................................................................................................2611.001.00-1.00---------------------------------------
...............................................................................................................................................AAGGATCGCGGAGAACCG.........................................................................................1811.001.00---------------1.00-------------------------
..............................................................................................................................................................................................................................CTAACACATGCTTATCCAG.........191.000.00------------------------1.00----------------
....................................................................................................CCTCCCTGGATCTCGG......................................................................................................................................1611.001.00------------------------------1.00----------
...................................................................................................................................GCTCTGAGGCTGAAGGATCGC..................................................................................................2111.001.00---1.00-------------------------------------
.................................................................................................................................................................................................................AACTGCGGACACTCTAACACA....................2111.001.00--------------------------1.00--------------
................................................................................................................................ACTGCTCTGAGGCTGAAGGATCGCGGAG..............................................................................................2811.001.00----------------1.00------------------------
......................................................................GCCGACCCTTCCACTACCGTTGC.............................................................................................................................................................2311.001.00-----------------1.00-----------------------
...........................................................................................................................................GCTGAAGGATCGCGGAG..............................................................................................1711.001.00---------------------------1.00-------------
.................................................................................................................................CTGCTCTGAGGCTGAAGGATC....................................................................................................2111.001.00------1.00----------------------------------
.....................................................................................................................................TCTGAGGCTGAAGGATCGC..................................................................................................1911.001.00--------------------------------1.00--------
.........................................................................................................................................AGGCTGAAGGATCGCGGA...............................................................................................1811.001.00--------------1.00--------------------------
.........................................................................................................................TGGGGCCACTGCTCTGAGGCTGAAG........................................................................................................2511.001.00-1.00---------------------------------------
..............................................................................................................................................GAAGGATCGCGGAGAACCG.........................................................................................1911.001.00------------------------------------1.00----
....................................................................................................................................CTCTGAGGCTGAAGGATCGCGGAG..............................................................................................2411.001.00----------------------1.00------------------
......................................................................................................................AGTTGGGGCCACTGCTCTGAGGCTGAAGG.......................................................................................................2911.001.00-----------------------1.00-----------------
.............................................................................................................................GCCACTGCTCTGAGGCTG...........................................................................................................1811.001.00--------1.00--------------------------------

Antisense strand
ATGAGCTGCGGGGCGACGTCATTCCCCGAGGGTCTAACTTGCGCTTCATGGTGAGGCCGGAAGGCGGTTTGCCGACCCTTCCACTACCGTTGCCACAACGCCTCCCTGGATCTCGGGTAGTTGGGGCCACTGCTCTGAGGCTGAAGGATCGCGGAGAACCGCACTTTTAGCTTGGTTTTTAAAGTACACGTGAAGTTTACACAGAGAAAAACTGCGGACACTCTAACACATGCTTATTACCATGATATTA
.....................................................................................................((((.(((.(((..(((..(((((((....))))))).)))..))).))).))))..............................................................................................
....................................................................................................101........................................................160........................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR038855(GSM458538)
D10. (cell line)		SRR029132(GSM416761)
MB-MDA231. (cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR189782TAX577740(Rovira)
total RNA. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		TAX577739(Rovira)
total RNA. (breast)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM339994(GSM339994)
hues6. (cell line)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		TAX577742(Rovira)
total RNA. (breast)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786TAX577589(Rovira)
total RNA. (breast)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
.......................................................AGGGTCGGCAAACCGCCTTCCGGC........................................................................................................................................................................... 2412.002.00----------2.00------------------------------
..........................................................................AACGGTAGTGGAAGGGT............................................................................................................................................................... 1711.001.00--1.00--------------------------------------
...................................................................................................................................................................CTTTTAGCTTGGTTTGAC..................................................................... 181.000.00-------------------------1.00---------------
..................................................................................ACTACCGTTGCCACAATTC..................................................................................................................................................... 191.000.00----------------------------------1.00------
................................................................................................CGAGATCCAGGGAGGCGTT....................................................................................................................................... 1911.001.00-------------1.00---------------------------
......................................CACCATGAAGCGCAA..................................................................................................................................................................................................... 1540.250.25----------------------------------------0.25