ID: uc001str.3_intron_1_0_chr12_68043726_f.5p
GENE: (2)
chr12:68043676-68043925+


(8)
B-CELL 		(8)
BREAST 		(13)
CELL-LINE 		(6)
CERVIX 		(2)
HEART 		(2)
LIVER 		(5)
OTHER 		(1)
RRP40.ip 		(12)
SKIN

Sense strand
TCGCCCTGCCGCCTCTCCGGGCCAGCAACGCTGCCGCCGCAGCCCACACGGTGAGACCCAGCCCGCGGGCGGCCCGGGCGGTGGGGGCGGGAGGGGCCCCAGGCCGAAGCACCCGGACTTGGAGGGGTCTGACGCCGGGAGAAGAGGGGTCGAGATACAAGCAGCCCCACGCCTCGGGCCGATGGTCTCTCGTCGACGCCGCCCTGGTTAAGTTGGGCGAGCCCAAAGCTGCAGCCACAAAGGAAGATTC
............................................................(((....)))...(((((((((.(((((.......)))))..)))).....)))))......................................................................................................................................
..........................................................59............................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189783SRR189784SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR040037(GSM532922)
G243T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532878(GSM532878)
G691T. (cervix)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		GSM532929(GSM532929)
G702N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................CGCGGGCGGCCCGGGT...........................................................................................................................................................................1666.000.0027.0019.006.00--6.00----1.00--------1.00----1.00------1.001.00---1.00-------1.00----1.00------
...............................................................CGCGGGCGGCCCGGGTTC.........................................................................................................................................................................1811.000.003.00--4.00----1.00-----2.00--------1.00--------------------------------
...............................................................CGCGGGCGGCCCGGGTTCG........................................................................................................................................................................195.000.001.00-------1.00-------------------1.00--------1.00-1.00----------------
...............................................................CGCGGGCGGCCCGGGTT..........................................................................................................................................................................174.000.00---2.00----1.00--------------------------1.00--------------------
....................................................................GCGGCCCGGGCGGTGCGC....................................................................................................................................................................183.000.00------1.00--------2.00----------------------------------------
..............................................................CCGCGGGCGGCCCGGGT...........................................................................................................................................................................173.000.00---------1.00------1.00--------1.00------------------------------
....................................................................GCGGCCCGGGCGGTGCGT....................................................................................................................................................................182.000.00----2.00---------------------------------------------------
...............................................................CGCGGGCGGCCCGGGGT..........................................................................................................................................................................172.000.00---1.00---------1.00------------------------------------------
...............................................................CGCGGGCGGCCCGGGA...........................................................................................................................................................................162.000.00-1.00-------------------------1.00----------------------------
...............................................................CGCGGGCGGCCCGGGGTC.........................................................................................................................................................................181.000.00---1.00----------------------------------------------------
....................................................................GCGGCCCGGGCGGTGTGCT...................................................................................................................................................................191.000.00----1.00---------------------------------------------------
........................................................CCCAGCCCGCGGGCGGCGGCG.............................................................................................................................................................................211.000.00----------------------------------------------1.00---------
....................................................GAGACCCAGCCCGCGCTC....................................................................................................................................................................................181.000.00------1.00-------------------------------------------------
...................................................................................................CAGGCCGAAGCACCCCGG.....................................................................................................................................181.000.00---------------------------------------------1.00----------
................................................................................................................................CTGACGCCGGGAGAAG..........................................................................................................1611.001.00----------------------------------1.00---------------------
...........................................................................................................AGCACCCGGACTTGGGGG.............................................................................................................................181.000.00----------1.00---------------------------------------------
....................................................................GCGGCCCGGGCGGTGTGTT...................................................................................................................................................................191.000.00----1.00---------------------------------------------------
....................................CCGCAGCCCACACGGGG.....................................................................................................................................................................................................171.000.00--------------------------------------1.00-----------------
............................................................................GGCGGTGGGGGCGGGTTGC...........................................................................................................................................................191.000.00------------------1.00-------------------------------------
..................................................GTGAGACCCAGCCCGCGGGC....................................................................................................................................................................................2011.001.00------------------------------------------1.00-------------
.................................................................................................................................................................CAGCCCCACGCCTCGAGTT......................................................................191.000.00--1.00-----------------------------------------------------
....................................................................GCGGCCCGGGCGGTGTGCA...................................................................................................................................................................191.000.00----1.00---------------------------------------------------
....................................................................GCGGCCCGGGCGGTGCAC....................................................................................................................................................................181.000.00------1.00-------------------------------------------------
............CTCTCCGGGCCAGCAACG............................................................................................................................................................................................................................1811.001.00-----------------------------------------------1.00--------
....................................................................GCGGCCCGGGCGGTGTGC....................................................................................................................................................................181.000.00----1.00---------------------------------------------------
.............................................................CCCGCGGGCGGCCCGTGT...........................................................................................................................................................................181.000.00---------1.00----------------------------------------------
........................................................................................................................................................................ACGCCTCGGGCCGATCGC................................................................181.000.00----------------------1.00---------------------------------
.........................................................CCAGCCCGCGGGCGGTGT...............................................................................................................................................................................181.000.00------------------------------------------------1.00-------
...........................................................................................................................................................................CCTCGGGCCGATGGTCTCTCGT.........................................................2211.001.00-------------1.00------------------------------------------
..................................................................................GGGGGCGGGAGGGGCCG.......................................................................................................................................................171.000.00------------1.00-------------------------------------------
..................................................................................................................................GACGCCGGGAGAAGAAAA......................................................................................................181.000.00-----------------------------------------1.00--------------
..............................................................CCGCGGGCGGCCCGGGTTCG........................................................................................................................................................................201.000.00-----------------------------1.00--------------------------
.............................................................CCCGCGGGCGGCCCGGGT...........................................................................................................................................................................1840.750.25-0.25--------------0.50---------------------------------------
.............................................................CCCGCGGGCGGCCCGGGC...........................................................................................................................................................................1830.330.33----------------0.33---------------------------------------
.....................................................................CGGCCCGGGCGGTGGG.....................................................................................................................................................................1630.330.33----------------------------------------------------0.33---
.....................................................................CGGCCCGGGCGGTGGGG....................................................................................................................................................................1730.330.33---------0.33----------------------------------------------
...............................................................CGCGGGCGGCCCGGGC...........................................................................................................................................................................1670.290.29----------0.14------0.14--------------------------------------
.............................................................CCCGCGGGCGGCCCGGG............................................................................................................................................................................1740.250.25-----------------------------------------------------0.25--
...............................................................CGCGGGCGGCCCGGGCTC.........................................................................................................................................................................1870.140.29-------------------------------------------------------0.14

Antisense strand
TCGCCCTGCCGCCTCTCCGGGCCAGCAACGCTGCCGCCGCAGCCCACACGGTGAGACCCAGCCCGCGGGCGGCCCGGGCGGTGGGGGCGGGAGGGGCCCCAGGCCGAAGCACCCGGACTTGGAGGGGTCTGACGCCGGGAGAAGAGGGGTCGAGATACAAGCAGCCCCACGCCTCGGGCCGATGGTCTCTCGTCGACGCCGCCCTGGTTAAGTTGGGCGAGCCCAAAGCTGCAGCCACAAAGGAAGATTC
............................................................(((....)))...(((((((((.(((((.......)))))..)))).....)))))......................................................................................................................................
..........................................................59............................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189785SRR189783SRR189784SRR015363(GSM380328)
Germinal Center B cell (GC40). (B cell)		SRR040037(GSM532922)
G243T. (cervix)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040039(GSM532924)
G531T. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR015361(GSM380326)
Memory B cells (MM55). (B cell)		TAX577745(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		GSM532876(GSM532876)
G547T. (cervix)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR040007(GSM532892)
G601T. (cervix)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		GSM532878(GSM532878)
G691T. (cervix)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577746(Rovira)
total RNA. (breast)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR444046(SRX128894)
Sample 7cDNABarcode: AF-PP-342: ACG CTC TTC C. (skin)		GSM532929(GSM532929)
G702N. (cervix)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390725(GSM850204)
small rna immunoprecipitated. (cell line)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		TAX577741(Rovira)
total RNA. (breast)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577579(Rovira)
total RNA. (breast)		TAX577744(Rovira)
total RNA. (breast)		GSM541796(GSM541796)
undifferentiated human embryonic stem cells. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
...............................................................................................GCCCCAGGCCGAAGCAGA......................................................................................................................................... 183.000.00-------3.00------------------------------------------------
...............................................................................................................................................................................................................................CAAAGCTGCAGCCACTGGG........ 191.000.001.00-------------------------------------------------------
.........................................................................CCGGGCGGTGGGGGCGGCCT............................................................................................................................................................. 201.000.00------------------------------1.00-------------------------
...CCCTGCCGCCTCTCCTGG..................................................................................................................................................................................................................................... 181.000.00-----------------1.00--------------------------------------
..............................CACCGTGTGGGCTGCGGCGGCAG..................................................................................................................................................................................................... 2311.001.00-------------------------------------------1.00------------
........................................................................................................................................................................................CAGGGCGGCGTCGACGAGAGAC............................................ 2211.001.00-----------1.00--------------------------------------------
...................................................TGAGACCCAGCCCGCTCAC.................................................................................................................................................................................... 191.000.00------------1.00-------------------------------------------
...CCCTGCCGCCTCTCCGTA..................................................................................................................................................................................................................................... 181.000.00---------------------1.00----------------------------------
..............................CTGCCGCCGCAGCCCAAC.......................................................................................................................................................................................................... 181.000.00--------------------1.00-----------------------------------
..................................................................................................................................................................................GTCGACGAGAGACCATCGG..................................................... 1911.001.00--------------------------1.00-----------------------------
..................................................................................................................................GACGCCGGGAGAAGAGGCT..................................................................................................... 191.000.00--1.00-----------------------------------------------------
............................................................................................................................................................................................CAGGGCGGCGTCGACGAG............................................ 1811.001.00-----------1.00--------------------------------------------
.........................................................................................................................................................................................ACCAGGGCGGCGTCGACGAGAGA.......................................... 2311.001.00----------------------------------------1.00---------------
..................................................................................................................................GACGCCGGGAGAAGAGGCC..................................................................................................... 191.000.00---------------------------------1.00----------------------
.................................TGTGGGCTGCGGCGG.......................................................................................................................................................................................................... 1520.500.50--------------------------------------------------0.50-----
.................................CCGCCGCAGCCCACAGCA....................................................................................................................................................................................................... 180.500.00---------------------------------------------------0.50----
......................................................................CCCCACCGCCCGGGCC.................................................................................................................................................................... 1670.140.14------------------------------------------------------0.14-