ID: uc001stf.2_intron_1_0_chr12_66532515_r.3p
GENE: (5)
chr12:66532465-66532714-


(1)
AGO2.ip 		(5)
BREAST 		(9)
CELL-LINE 		(1)
CERVIX 		(4)
HEART 		(1)
KIDNEY 		(3)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(8)
SKIN

Sense strand
TCCAAGATGGGCATTATATTCATTGTATGTTTACAAATTCTTACATTTTAGTTATTCTTCAGCAAAAAATCCAGATGGATGTTTTTTTCAGAAAGTGTTGAATGGGTTTACAAAGTTTTTTTGTAAGGAACAATATTGCAAATTACTAAAATTGTATTTTTATAGGCTGTTTGCTCTTTTGTGGATATTGTGCCTGTCAGGATTCTTGAAGGTAAGTTATGTTATAATGGTTAATTTGAAATATAATTCT
............................................................................................................((((((((...(((((((.........)))))))..)))....)))))..............................................................................................
.....................................................................................................102....................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189787SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189786SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)
.....................................................................................................................................TATTGCAAATTACTAAGTTG.................................................................................................20312.330.338.670.67-0.33------0.67-0.33---------------0.33-0.33-0.330.330.33--
....................................................................................................................................ATATTGCAAATTACTAAG....................................................................................................187.000.006.00--1.00---------------------------------
.....................................................................................................................................TATTGCAAATTACTAAAATGCA...............................................................................................225.000.00-4.00--------------------1.00--------------
.............................................................................................................................................................................................GTGCCTGTCAGGATTCTTGAAGG......................................2312.002.00--------2.00----------------------------
.....................................................................................................................................TATTGCAAATTACTAAACTGC................................................................................................212.000.00--2.00----------------------------------
.....................................................................................................................................TATTGCAAATTACTATT....................................................................................................172.000.002.00------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAATTGC................................................................................................212.000.00-1.00---------------1.00-------------------
..........................................................................................................TTTACAAAGTTTTTTGAAA.............................................................................................................................191.000.00-------1.00-----------------------------
.....................................................................................................................................TATTGCAAATTACTAAAATGG................................................................................................211.000.00-1.00-----------------------------------
................................................................................................................................................................................TTTTGTGGATATTGTGCCTGTCAGGATT..............................................2811.001.00----1.00--------------------------------
....................................................................................................................................................................................GTGGATATTGTGCCTGTCA...................................................1911.001.00------1.00------------------------------
........................................................................................................................................................................GTTTGCTCTTTTGTGGATATTGTGCCTGTCAG..................................................3211.001.00----------------1.00--------------------
.....................................................................................................................................TATTGCAAATTACTAAATTCC................................................................................................211.000.00-1.00-----------------------------------
.....................................................................................................................................................................................TGGATATTGTGCCTGTCAGGATTCT............................................2511.001.00------------------------1.00------------
....................................................................................................................................ATATTGCAAATTACTAAGGTG.................................................................................................211.000.00-----------------------1.00-------------
....................................................................................................................................ATATTGCAAATTACTAAGTTG.................................................................................................211.000.00-------------------1.00-----------------
.....................................................................................................................................TATTGCAAATTACTAAAATGC................................................................................................211.000.00-1.00-----------------------------------
.....................................................................................................................................................................................TGGATATTGTGCCTGTCAGGA................................................2111.001.00-------------------------1.00-----------
.........................................................................................................................................................GTATTTTTATAGGCTGTTTGC............................................................................2111.001.00------------------1.00------------------
...................................................................................................................................................................................TGTGGATATTGTGCCTGTCAGGATTC.............................................2611.001.00---------1.00---------------------------
....................................................................................................................................................................................GTGGATATTGTGCCTGTCAGGA................................................2211.001.00--------------1.00----------------------
..................................................................................TTTTTTCAGAAAGTGGTTT.....................................................................................................................................................191.000.00-------1.00-----------------------------
......................................................................................................................................................................................GGATATTGTGCCTGTCAGGATTCT............................................2411.001.00-----------1.00-------------------------
.........................................................................................................................................................................................TATTGTGCCTGTCAGGATT..............................................1911.001.00---------------1.00---------------------
......................................................................................................................................ATTGCAAATTACTAAGTTG.................................................................................................191.000.001.00------------------------------------
.....................................................................................................................................................................................................CAGGATTCTTGAAGGTAAGTT................................2111.001.00------------1.00------------------------
........................................................................................................................................................................GTTTGCTCTTTTGTGGATATTGTGCCTGTCAGG.................................................3311.001.00----1.00--------------------------------
.................................................................................................................................................................................................CTGTCAGGATTCTTGAAGTT.....................................2011.001.00------1.00------------------------------
.................................................................................................................................................................................TTTGTGGATATTGTGCCTGTCAGGATTCT............................................2911.001.00---------------------1.00---------------
.....................................................................................................................................TATTGCAAATTACTAAGT...................................................................................................1831.000.33-0.33--------0.33--------------------0.33-----
.................................................................................................................................................................................TTTGTGGATATTGTGCCTGTCAGG.................................................2411.001.00---------1.00---------------------------
....................................................................................................................................ATATTGCAAATTACTAAATTGC................................................................................................221.000.00-1.00-----------------------------------
....................................................................................................................................ATATTGCAAATTACTAAT....................................................................................................181.000.001.00------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAAATGCAT..............................................................................................231.000.00-1.00-----------------------------------
.....................................................................................................................................................................................TGGATATTGTGCCTGTCAGG.................................................2011.001.00----1.00--------------------------------
.....................................................................................................................................TATTGCAAATTACTACG....................................................................................................171.000.001.00------------------------------------
..........................................................................................................................................................................................ATTGTGCCTGTCAGGATTCTTGA.........................................2311.001.00-------------1.00-----------------------
.................................................................................................................................................................................................CTGTCAGGATTCTTGAAG.......................................1811.001.00---------------------------1.00---------
.....................................................................................................................................TATTGCAAATTACTAAGCTG.................................................................................................2030.670.330.67------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAGTTT.................................................................................................2030.670.330.67------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAGTT..................................................................................................1930.670.330.33---------0.33--------------------------
..........................................................................................................................................................................................ATTGTGCCTGTCAGGATTC.............................................1920.500.50-----------0.50-------------------------
...................................................................................................................................................................................................GTCAGGATTCTTGAAG.......................................1620.500.50-----------------------------0.50-------
.....................................................................................................................................TATTGCAAATTACTAAGCG..................................................................................................1930.330.33---0.33---------------------------------
.....................................................................................................................................TATTGCAAATTACTAATTG..................................................................................................1930.330.33---0.33---------------------------------
.....................................................................................................................................TATTGCAAATTACTAAC....................................................................................................1730.330.330.33------------------------------------
.....................................................................................................................................TATTGCAAATTACTAATTTG.................................................................................................2030.330.330.33------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAGGTG.................................................................................................2030.330.33----------------------------0.33--------
.....................................................................................................................................TATTGCAAATTACTAA.....................................................................................................1630.330.330.33------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAGCTT.................................................................................................2030.330.330.33------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAGTAG.................................................................................................2030.330.330.33------------------------------------
.....................................................................................................................................TATTGCAAATTACTAAGAT..................................................................................................1930.330.33----------0.33--------------------------
.....................................................................................................................................TATTGCAAATTACTAAGCGG.................................................................................................2030.330.33---0.33---------------------------------
.....................................................................................................................................TATTGCAAATTACTAAGATG.................................................................................................2030.330.33-0.33-----------------------------------
.................................................................................................................................................................................TTTGTGGATATTGTGC.........................................................1640.250.25-----------------------------------0.25-

Antisense strand
TCCAAGATGGGCATTATATTCATTGTATGTTTACAAATTCTTACATTTTAGTTATTCTTCAGCAAAAAATCCAGATGGATGTTTTTTTCAGAAAGTGTTGAATGGGTTTACAAAGTTTTTTTGTAAGGAACAATATTGCAAATTACTAAAATTGTATTTTTATAGGCTGTTTGCTCTTTTGTGGATATTGTGCCTGTCAGGATTCTTGAAGGTAAGTTATGTTATAATGGTTAATTTGAAATATAATTCT
............................................................................................................((((((((...(((((((.........)))))))..)))....)))))..............................................................................................
.....................................................................................................102....................................................157...........................................................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR189787SRR189784SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189786SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR037943(GSM510481)
293DcrTN. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR191406(GSM715516)
67genomic small RNA (size selected RNA from t. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037938(GSM510476)
293Red. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM532886(GSM532886)
G850T. (cervix)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577738(Rovira)
total RNA. (breast)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189783SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR191454(GSM715564)
180genomic small RNA (size selected RNA from . (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207110(GSM721072)
Nuclear RNA. (cell line)
.............................................................................................AGTGTTGAATGGGTTTACAAA........................................................................................................................................ 211.000.00-----1.00-------------------------------
...............................................................................................TGTTGAATGGGTTTACAGTGA...................................................................................................................................... 211.000.00--1.00----------------------------------
....................CATTGTATGTTTACACTCA................................................................................................................................................................................................................... 191.000.001.00------------------------------------
.............................................................................................................................................................................................GTGCCTGTCAGGATTCTTTCAC....................................... 221.000.00--------------------1.00----------------
...............................................................................................TGTTGAATGGGTTTACAGTAA...................................................................................................................................... 211.000.00--1.00----------------------------------
.............................................................................................AGTGTTGAATGGGTTTACACAG....................................................................................................................................... 221.000.00--1.00----------------------------------
...........................................................................................................................................................................TGCTCTTTTGTGGATCCA............................................................. 181.000.00--------------------------1.00----------
.............................................................................................AGTGTTGAATGGGTTTACAGA........................................................................................................................................ 211.000.00-----1.00-------------------------------
.............................................................................................AGTGTTGAATGGGTTTACACA........................................................................................................................................ 211.000.00-----1.00-------------------------------
............................................................................................................................AAGGAACAATATTGCAACTAG......................................................................................................... 211.000.00---1.00---------------------------------
........AATGAATATAATGCCC.................................................................................................................................................................................................................................. 1620.500.50------0.50------------------------------
.....................................................................AAAAAAACATCCATCTGGA.................................................................................................................................................................. 1920.500.50-------0.50-----------------------------
.............................ATGTAAGAATTTGTAAA............................................................................................................................................................................................................ 1760.170.17------------------------------------0.17