ID: uc001ssj.1_intron_0_0_chr12_65277646_f.5p
GENE: (1)
chr12:65277596-65277845+


(3)
AGO2.ip
(1)
B-CELL
(5)
BREAST
(23)
CELL-LINE
(7)
CERVIX
(1)
FIBROBLAST
(1)
HEART
(1)
HELA
(3)
LIVER
(3)
OTHER
(5)
SKIN
(1)
XRN.ip

Sense strand
TGACAGAACGCAATGGAAACAGAGCGTGGCATTCGCTCCATCTCCCCCAGGTGAGCGGCAGCTTTCTCACGGGGGGTCGGGGGCGGGGGGGGGGGGGGGCTCTAGGGCATCTCTAATGGCGTCTGCGGGGAAGCAGCAGGGCTGGGTGAGAAAGTGGGTCTCACGGGACCTGCAGTGTTCAGCAGAGCCGTGGGAGTGCCTGCTGGGAGCATACTTGTTTGGGAACACATGAGAGGCACCCCCTGAAGAT
....................................................((((.....((..(((.((............)).)))..)).....))))....................................................................................................................................................
..................................................51...................................................104................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM532880(GSM532880)
G659T. (cervix)
GSM956925PAZD5SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
..................................................................................GCGGGGGGGGGGGGGGGC......................................................................................................................................................18043.0043.0042.00----1.00--------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGG.......................................................................................................................................................17029.0029.0029.00-------------------------------------------------
.................................................................................GGCGGGGGGGGGGGGGG........................................................................................................................................................17015.0015.008.00--4.001.002.00--------------------------------------------
.................................................................................GGCGGGGGGGGGGGGGGG.......................................................................................................................................................18015.0015.0013.00--1.001.00---------------------------------------------
.................................................................................GGCGGGGGGGGGGGGGGGC......................................................................................................................................................1909.009.003.00--4.002.00---------------------------------------------
.........................................................................GGGTCGGGGGCGGGGGTGGG.............................................................................................................................................................207.000.00-------3.00----------------1.00------1.00------1.001.00----------
..................................................................................GCGGGGGGGGGGGGGGGA......................................................................................................................................................1804.0029.004.00-------------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGT......................................................................................................................................................1803.0029.003.00-------------------------------------------------
.......................................................................GGGGGTCGGGGGCGGGGGGGG..............................................................................................................................................................2112.002.00--------------------------------1.00--------1.00--------
.......................................................................GGGGGTCGGGGGCGGGGGGGGG.............................................................................................................................................................2212.002.00-----------1.00-------------1.00------------------------
.......................................................................GGGGGTCGGGGGCGGGGGGG...............................................................................................................................................................2012.002.00-1.00-------------------------------------------1.00----
...............................................................................GGGGCGGGGGGGGGGGGG.........................................................................................................................................................1802.002.00---------------1.00----------------------------1.00-----
........................................................................................................................................................................................................................GTTTGGGAACACATGAGAGG..............2012.002.00----------------2.00---------------------------------
..............................................................................................................................................................................................................GAGCATACTTGTTTGAGTG.........................192.000.00-------------2.00------------------------------------
..........................................................................GGTCGGGGGCGGGGGGGGGCA...........................................................................................................................................................212.000.00-----------2.00--------------------------------------
......................................................................GGGGGGTCGGGGGCGGCA..................................................................................................................................................................181.000.00--------1.00-----------------------------------------
...........................................................................GTCGGGGGCGGGGGGGTG.............................................................................................................................................................181.000.00--------------------1.00-----------------------------
...............................................................................GGGGCGGGGGGGGGGGGGGGGG.....................................................................................................................................................221.000.00---1.00----------------------------------------------
...............................................................................GGGGCGGGGGGGGGGGGGG........................................................................................................................................................1901.001.00----1.00---------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGCCCC...................................................................................................................................................2101.0043.00------------------------------------1.00-------------
..................................................................................GCGGGGGGGGGGGGGGGACG....................................................................................................................................................2001.0029.001.00-------------------------------------------------
.........................................................GCAGCTTTCTCACGGGGGCAG............................................................................................................................................................................211.000.00------------1.00-------------------------------------
............................................................................TCGGGGGCGGGGGGGGGGGCATC.......................................................................................................................................................231.000.00----------------------------------1.00---------------
...........................................................................GTCGGGGGCGGGGGGGGGC............................................................................................................................................................191.000.00-------1.00------------------------------------------
.............................................................................CGGGGGCGGGGGGGGGCAAA.........................................................................................................................................................201.000.00---------1.00----------------------------------------
.............................................................................CGGGGGCGGGGGGGGGGG...........................................................................................................................................................1801.001.00-----1.00--------------------------------------------
................................................................................GGGCGGGGGGGGGGGGGG........................................................................................................................................................1801.001.00---------------1.00----------------------------------
......................................................................................GGGGGGGGGGGGGCTCGCT.................................................................................................................................................191.000.00----------1.00---------------------------------------
........................................................................................................................................................AGTGGGTCTCACGGGAACAC..............................................................................201.000.00------------1.00-------------------------------------
.......................................................................GGGGGTCGGGGGCGGTCG.................................................................................................................................................................181.000.00------------------1.00-------------------------------
....................................................................................GGGGGGGGGGGGGGGCTACGA.................................................................................................................................................211.000.00--------1.00-----------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGTAAA...................................................................................................................................................2101.0029.00-----------------------1.00--------------------------
........................................................................................GGGGGGGGGGGCTCTTTG................................................................................................................................................181.000.00-------------------------------------1.00------------
..................................................................................GCGGGGGGGGGGGGGGGCTG....................................................................................................................................................201.000.001.00-------------------------------------------------
....................................................................................GGGGGGGGGGGGGGGCTCGAG.................................................................................................................................................211.000.00----------1.00---------------------------------------
......................................................................GGGGGGTCGGGGGCGGGGGGT...............................................................................................................................................................211.000.00--------------1.00-----------------------------------
.......................................................................GGGGGTCGGGGGCGGGGGTC...............................................................................................................................................................201.000.00-------------------------------------------1.00------
.............................................................................CGGGGGCGGGGGGGGGGCCT.........................................................................................................................................................201.000.00----------------------1.00---------------------------
......................................................................GGGGGGTCGGGGGCGGCGG.................................................................................................................................................................191.000.00--------------1.00-----------------------------------
......................................................................GGGGGGTCGGGGGCGGGGGGGTG.............................................................................................................................................................231.000.00----------1.00---------------------------------------
.........................................................................GGGTCGGGGGCGGGGGGGGG.............................................................................................................................................................2030.670.67---------0.33-------------------------------------0.33--
.............................................................................................................................CGGGGAAGCAGCAGGGC............................................................................................................1720.500.50----------------------------------------------0.50---
.........................................................................GGGTCGGGGGCGGGGGGGGGTG...........................................................................................................................................................2230.330.67--------0.33-----------------------------------------
.....................................................................................GGGGGGGGGGGGGGCTCT...................................................................................................................................................1890.220.22--------0.22-----------------------------------------
.........................................................................................................................................AGGGCTGGGTGAGAAA.................................................................................................1650.200.20------------------------------------------------0.20-
...................................................................................CGGGGGGGGGGGGGGGCT.....................................................................................................................................................1870.140.14-0.14------------------------------------------------
...............................................CAGGTGAGCGGCAGC............................................................................................................................................................................................1580.120.12-------------------------------------------------0.12

Antisense strand
TGACAGAACGCAATGGAAACAGAGCGTGGCATTCGCTCCATCTCCCCCAGGTGAGCGGCAGCTTTCTCACGGGGGGTCGGGGGCGGGGGGGGGGGGGGGCTCTAGGGCATCTCTAATGGCGTCTGCGGGGAAGCAGCAGGGCTGGGTGAGAAAGTGGGTCTCACGGGACCTGCAGTGTTCAGCAGAGCCGTGGGAGTGCCTGCTGGGAGCATACTTGTTTGGGAACACATGAGAGGCACCCCCTGAAGAT
....................................................((((.....((..(((.((............)).)))..)).....))))....................................................................................................................................................
..................................................51...................................................104................................................................................................................................................
SizePerfect hitTotal NormPerfect NormGSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)
GSM956925Ago2(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)
GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
GSM532876(GSM532876)
G547T. (cervix)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
GSM532874(GSM532874)
G699T. (cervix)
SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)
SRR189784SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)
GSM532880(GSM532880)
G659T. (cervix)
GSM956925PAZD5SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR040037(GSM532922)
G243T. (cervix)
SRR040028(GSM532913)
G026N. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR037943(GSM510481)
293DcrTN. (cell line)
DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR040036(GSM532921)
G243N. (cervix)
SRR191449(GSM715559)
144genomic small RNA (size selected RNA from . (breast)
SRR037937(GSM510475)
293cand2. (cell line)
SRR189785SRR040008(GSM532893)
G727N. (cervix)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR039636(GSM518473)
THP1_cyto_sRNAs. (cell line)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
TAX577742(Rovira)
total RNA. (breast)
DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)
TAX577579(Rovira)
total RNA. (breast)
SRR038857(GSM458540)
D20. (cell line)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR037939(GSM510477)
293cand5_rep1. (cell line)
SRR029131(GSM416760)
MCF7. (cell line)
SRR038856(GSM458539)
D11. (cell line)
GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR444041(SRX128889)
Sample 2cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)
..................................................................................GCGGGGGGGGGGGGGGGCC..................................................................................................................................................... 1914.000.00-8.004.00---1.00--1.00----------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGCC.................................................................................................................................................... 206.000.00-3.003.00-----------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGGCC................................................................................................................................................... 2104.000.00-1.001.00---1.00--1.00----------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGG..................................................................................................................................................... 193.000.00-2.001.00-----------------------------------------------
....................................................................................GGGGGGGGGGGGGGGCTCC................................................................................................................................................... 192.000.00--------1.00-----------------1.00-----------------------
..................................................................................GCGGGGGGGGGGGGGGGCGGC................................................................................................................................................... 2102.000.00-1.001.00-----------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGCG.................................................................................................................................................... 2002.000.00---------------------------1.00--1.00-------------------
..................................................................................GCGGGGGGGGGGGGGGGGC..................................................................................................................................................... 192.000.00-2.00------------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGCGCT................................................................................................................................................... 2101.000.00---------------------1.00----------------------------
..................................................................................GCGGGGGGGGGGGGGGGCGG.................................................................................................................................................... 2001.000.00-1.00------------------------------------------------
.......................................................................................GGGGGGGGGGGGCTCGGC................................................................................................................................................. 181.000.00-----------------1.00--------------------------------
..................................................................................GCGGGGGGGGGGGGGGGCGCC................................................................................................................................................... 2101.000.00-1.00------------------------------------------------
.............................................................................CGGGGGCGGGGGGGGGTCGG......................................................................................................................................................... 201.000.00-----------------------------1.00--------------------
.....................................................................................GGGGGGGGGGGGGGCTGCA.................................................................................................................................................. 191.000.00----------------------------1.00---------------------
..............................................................................GGGGGCGGGGGGGGGGGGGGTC...................................................................................................................................................... 221.000.00-----------------------------------1.00--------------
..................................................................................GCGGGGGGGGGGGGGGGG...................................................................................................................................................... 181.000.00------1.00-------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGGG.................................................................................................................................................... 201.000.00-1.00------------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGCGGCC.................................................................................................................................................. 2201.000.00--1.00-----------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGCGT................................................................................................................................................... 2101.000.00---------------------------------1.00----------------
..............................................................................GGGGGCGGGGGGGGGGGGGGGACAC................................................................................................................................................... 251.000.00------1.00-------------------------------------------
......................................................................GGGGGGTCGGGGGCGGGCC................................................................................................................................................................. 191.000.00-------------------1.00------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGCGC................................................................................................................................................... 2101.000.00----------------------------------------1.00---------
..................................................................................GCGGGGGGGGGGGGGGGGG..................................................................................................................................................... 191.000.00-1.00------------------------------------------------
..................................................................................GCGGGGGGGGGGGGGGGGAC.................................................................................................................................................... 201.000.00-1.00------------------------------------------------
.....................................................................................GGGGGGGGGGGGGGCTGA................................................................................................................................................... 181.000.00------------------------------------------1.00-------