ID: uc001spv.2_intron_1_0_chr12_58143101_r
GENE: (6)
chr12:58143051-58143286-


(2)
AGO1.ip 		(3)
AGO2.ip 		(1)
AGO3.ip 		(7)
B-CELL 		(5)
BRAIN 		(4)
BREAST 		(29)
CELL-LINE 		(1)
CERVIX 		(2)
FIBROBLAST 		(7)
HEART 		(8)
HELA 		(11)
LIVER 		(1)
OTHER 		(10)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCTCTCTTCTGTGGAAACTCTGAAGCCGACCAGTTGGGCAAAATCTTTGAGTAAGTGACCAACATGGGAGAAAAAGATTTTCTATTCTGAGTCCTCTTTCTGCTGAACCCAGGATGGCAACTGGCTCTGCCCATGGGGATGGGAACTGGAGGACCCTCCTGACCAGAGTTCTCCTGTCCCCCACAGCCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGAGATGTATCCCTGC
......................................................................................................................................((((((((((.(((((((.....)))..)))).....)))))))))).......................................................
..............................................................................................................................127........................................................186................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577739(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR189783SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGAT.........................2319.009.004.00--1.00----2.00-----1.00------------------------------------------------------------------1.00----------
...............AACTCTGAAGCCGACCAGTTGGG......................................................................................................................................................................................................2317.007.003.00-------2.001.00-------------------------------------------------------------1.00--------------------
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGATG........................2416.006.006.00-------------------------------------------------------------------------------------------
..................................................GTAAGTGACCAACATGGGAGAAAAAG................................................................................................................................................................2615.005.00-------4.00----1.00-------------------------------------------------------------------------------
...................................................................................................................................CATGGGGATGGGAACTGGAGGACT.................................................................................2415.002.00-3.00----2.00-------------------------------------------------------------------------------------
.................................................................................................................ATGGCAACTGGCTCTGCCCATGGGGATGGGAACTGGAGGACCCTCCTGACCAGAGTTCTCCTGTCCCCCACAG..................................................7314.004.00----------4.00---------------------------------------------------------------------------------
...........................................................................................................................................TGGGAACTGGAGGACCCTCCTGACC........................................................................2514.004.00-------------------2.00-----------2.00------------------------------------------------------------
..........................................................................................................................................ATGGGAACTGGAGGACCCTCC.............................................................................2114.004.00-----------4.00--------------------------------------------------------------------------------
.............GAAACTCTGAAGCCGACCAGTTGGGCAAAA.................................................................................................................................................................................................3014.004.00--4.00-----------------------------------------------------------------------------------------
...............AACTCTGAAGCCGACCAGTTGGGCA....................................................................................................................................................................................................2513.003.00------------1.00----1.00------------------------------1.00-------------------------------------------
..............AAACTCTGAAGCCGACCAGTTGGG......................................................................................................................................................................................................2413.003.00---------------1.00----2.00-----------------------------------------------------------------------
..............................................................................................................AGGATGGCAACTGGCTCT............................................................................................................1813.003.00----3.00---------------------------------------------------------------------------------------
...............AACTCTGAAGCCGACCAGTTGG.......................................................................................................................................................................................................2213.003.00---------2.00-------1.00--------------------------------------------------------------------------
...............AACTCTGAAGCCGACCAGTTGGGCAAAA.................................................................................................................................................................................................2813.003.00--2.00---------------------------------------------------------------------------------1.00-------
...................................................................................................................................CATGGGGATGGGAACTGGAGGAC..................................................................................2312.002.00----------------------------2.00---------------------------------------------------------------
.........................................................................................................................................GATGGGAACTGGAGGACCCTCCTGT..........................................................................252.000.00------2.00-------------------------------------------------------------------------------------
.............................................................................................................................................................................................GATTGGGCTGCCTCCAGAG............................1912.002.00----2.00---------------------------------------------------------------------------------------
..............AAACTCTGAAGCCGACCAGTTGGGCA....................................................................................................................................................................................................2612.002.00---1.00-------------1.00--------------------------------------------------------------------------
....................................................................................................................................ATGGGGATGGGAACTGGAGGACC.................................................................................2312.002.002.00-------------------------------------------------------------------------------------------
..............................................................................................................................................................................................ATTGGGCTGCCTCCAGAGGACG........................222.000.00-----2.00--------------------------------------------------------------------------------------
.....................GAAGCCGACCAGTTGGGCA....................................................................................................................................................................................................1912.002.00-----------------------------2.00--------------------------------------------------------------
......................................................................................................................................................................AGTTCTCCTGTCCCCCACAGC.................................................2112.002.00------------------------------------------------------1.00-----1.00-------------------------------
...................................................................................................................................CATGGGGATGGGAACTGGAGGACCA................................................................................2512.001.002.00-------------------------------------------------------------------------------------------
..............AAACTCTGAAGCCGACCAGTTGGGCAA...................................................................................................................................................................................................2712.002.00---1.00----------------------1.00-----------------------------------------------------------------
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGA..........................2212.002.00-1.00----------1.00-------------------------------------------------------------------------------
..............................................................................................................................................................................................ATTGGGCTGCCTCCAGAGGATGA.......................2312.002.00-2.00------------------------------------------------------------------------------------------
...................CTGAAGCCGACCAGTTGGGCAAAATCTTTGA..........................................................................................................................................................................................3112.002.00---------------------------------2.00----------------------------------------------------------
..........GTGGAAACTCTGAAGCCG................................................................................................................................................................................................................1812.002.00-------------1.00----------------------1.00-------------------------------------------------------
..............................................................................................................................................................................................................AGGATGACTGGCCTCGAG............1812.002.00----------------2.00---------------------------------------------------------------------------
.......TCTGTGGAAACTCTGAAGCC.................................................................................................................................................................................................................2012.002.00----------------------1.001.00--------------------------------------------------------------------
...................................................................................................................................CATGGGGATGGGAACTGGAGGACCCT...............................................................................2612.002.002.00-------------------------------------------------------------------------------------------
......................AAGCCGACCAGTTGGGCAAAATCT..............................................................................................................................................................................................2412.002.00------------------------------2.00-------------------------------------------------------------
.............GAAACTCTGAAGCCGACCAGTTGGGC.....................................................................................................................................................................................................2611.001.00-----------------------------------1.00--------------------------------------------------------
...............AACTCTGAAGCCGACCAGTCGGG......................................................................................................................................................................................................2311.001.00-------------------------------------------------------------------------1.00------------------
..........................................................................................................................................................................................................CCAGAGGATGACTGGCCTCG..............2011.001.00---------------------------1.00----------------------------------------------------------------
....................................................................................................................................ATGGGGATGGGAACTGGAGGACCCT...............................................................................2511.001.00-----------------------------------------------------------------1.00--------------------------
..........GTGGAAACTCTGAAGCCGACCAGTTGGGCAA...................................................................................................................................................................................................3111.001.00----------------------------------------------------------------------------1.00---------------
.....................................................................................................................................TGGGGATGGGAACTGGAGGACC.................................................................................2211.001.001.00-------------------------------------------------------------------------------------------
.....................................................................................................................................................................GAGTTCTCCTGTCCCACCC....................................................191.000.00----------------------------------------------1.00---------------------------------------------
......TTCTGTGGAAACTCTGAAGCCGACC.............................................................................................................................................................................................................2511.001.00---------------------------------------------1.00----------------------------------------------
...............AACTCTGAAGCCGACCAGT..........................................................................................................................................................................................................1911.001.00-------------------1.00------------------------------------------------------------------------
.............GAAACTCTGAAGCCGACCAGTTGGGCATA..................................................................................................................................................................................................2911.001.00------------------1.00-------------------------------------------------------------------------
....................................................................................................................................ATGGGGATGGGAACTCTG......................................................................................181.000.00----------------------------------------------------------------------------------1.00---------
.........TGTGGAAACTCTGAAGCCGACCAG...........................................................................................................................................................................................................2411.001.00-------------------------1.00------------------------------------------------------------------
..............................................................................................................................................................................................................AGGATGACTGGCCTCGAGATGTATCCCTG.2911.001.00-------------1.00------------------------------------------------------------------------------
....................................................................................................................................ATGGGGATGGGAACTGGAGGA...................................................................................2111.001.001.00-------------------------------------------------------------------------------------------
...........TGGAAACTCTGAAGCCGACCAGT..........................................................................................................................................................................................................2311.001.00-----------------------------------------1.00--------------------------------------------------
..........GTGGAAACTCTGAAGCCGACCAGTTGGGCA....................................................................................................................................................................................................3011.001.00----1.00---------------------------------------------------------------------------------------
............GGAAACTCTGAAGCCGACCAGTTGGGC.....................................................................................................................................................................................................2711.001.00----------------------------------1.00---------------------------------------------------------
.............................................................................................................................................................................................GATTGGGCTGCCTCCAGAGGAT.........................2211.001.00---------------------1.00----------------------------------------------------------------------
.....................................................................................................GCTGAACCCAGGATGGCAC....................................................................................................................191.000.00-1.00------------------------------------------------------------------------------------------
...........................GACCAGTTGGGCAAAATCT..............................................................................................................................................................................................1911.001.00----------------1.00---------------------------------------------------------------------------
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGATGACT.....................2711.001.00--------------1.00-----------------------------------------------------------------------------
..........................................................................................................................................ATGGGAACTGGAGGACCCTCA.............................................................................211.000.00-------------------------------------------------------1.00------------------------------------
...........................................................................................................................................TGGGAACTGGAGGACCCTCCTGACCAG......................................................................2711.001.00--------------1.00-----------------------------------------------------------------------------
...........TGGAAACTCTGAAGCCGACCAGTTGGGCAAA..................................................................................................................................................................................................3111.001.00---------------1.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................AGGATGACTGGCCTCGAGA...........1911.001.00--------------------------------------------1.00-----------------------------------------------
.............................................................................................................................................................................................GATTGGGCTGCCTCCAGAGGA..........................2111.001.00--------------------------------------------------------------------1.00-----------------------
.................CTCTGAAGCCGACCAGTTGGGCAAAA.................................................................................................................................................................................................2611.001.00--------------------------------------------------------------------------1.00-----------------
..............................................................................................................................................................................................................AGGATGACTGGCCTCGA.............1711.001.00---------1.00----------------------------------------------------------------------------------
..TCTCTTCTGTGGAAACTC........................................................................................................................................................................................................................1811.001.00-----------------------------------1.00--------------------------------------------------------
.................................................................................................................................................................................................................ATGACTGGCCTCGAGATGT........1911.001.00--------------------------------------------------------------------------------1.00-----------
.....................................................................................................................................................................GAGTTCTCCTGTCCCCCCATC..................................................211.000.00--------------------------------------------------1.00-----------------------------------------
...................................................................................................................................CATGGGGATGGGAACTGGAGGACC.................................................................................2411.001.00---------------------------------------1.00----------------------------------------------------
...........................................................................................................................................TGGGAACTGGAGGACTCTG..............................................................................191.000.00-------------------------1.00------------------------------------------------------------------
.......TCTGTGGAAACTCTGAAGCCGACCAG...........................................................................................................................................................................................................2611.001.00---------------------------------------------------------------1.00----------------------------
.............................................................................................CTCTTTCTGCTGAACCCAGGATGGCAACTGGCTCTGCCCATGGGGATGGGAACTGGAGGACCCTCCTGACCAGAGTTCTCCTGTCCCCCA.....................................................9011.001.00---------------------------------------------------------------------1.00----------------------
.........................................................................................................................................GATGGGAACTGGAGGACCCT...............................................................................2011.001.00-----------------------------------------------------------------------------1.00--------------
.....................................................................................................................................................AGGACCCTCCTGACCGA......................................................................171.000.00-----1.00--------------------------------------------------------------------------------------
..............................................................................................................AGGATGGCAACTGGCTCTGGCC........................................................................................................221.000.00----------------------------------------------------------------------1.00---------------------
....................................................................................................TGCTGAACCCAGGATGGC......................................................................................................................1811.001.00------------------------------------------------------------------1.00-------------------------
..........GTGGAAACTCTGAAGCCGAC..............................................................................................................................................................................................................2011.001.00------1.00-------------------------------------------------------------------------------------
..............................................................................................................................................................................................................AGGATGACTGGCCTCGAGATG.........2111.001.00---------------------------------------------------------1.00----------------------------------
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGATGTAA.....................2711.006.00--------------------------------1.00-----------------------------------------------------------
............GGAAACTCTGAAGCCGAC..............................................................................................................................................................................................................1811.001.00----------------------------------------1.00---------------------------------------------------
................ACTCTGAAGCCGACCAGTTGG.......................................................................................................................................................................................................2111.001.00----------------------------------1.00---------------------------------------------------------
............................................................................................................................................................................................................AGAGGATGACTGGCCTCGAGA...........2111.001.00------------------------------------------1.00-------------------------------------------------
...............AACTCTGAAGCCGACCAGTTGGGT.....................................................................................................................................................................................................2411.007.00-----------------------------------------------------1.00--------------------------------------
....................................................................................................................................................................AGAGTTCTCCTGTCCGGC......................................................181.000.00---------------------------1.00----------------------------------------------------------------
.....................................................................................................................CAACTGGCTCTGCCCATGGGGATGG..............................................................................................2511.001.00----------------------1.00---------------------------------------------------------------------
.........TGTGGAAACTCTGAAGCCGACCAGTT.........................................................................................................................................................................................................2611.001.00-----------------------1.00--------------------------------------------------------------------
................................................................................................................................................................................................TGGGCTGCCTCCAGAGGATA........................201.000.00-------------------------------------------------------------1.00------------------------------
...........................................................................................................................................TGGGAACTGGAGGACCCTCCTGA..........................................................................2311.001.00-1.00------------------------------------------------------------------------------------------
...................CTGAAGCCGACCAGTTGGGC.....................................................................................................................................................................................................2011.001.00------------------------------------------------------------------------1.00-------------------
.............................................................................................................................................................................................GATTGGGCTGCCTCCAGAGGATGA.......................2411.001.00-1.00------------------------------------------------------------------------------------------
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGATGAC......................2611.001.00------------------1.00-------------------------------------------------------------------------
........................................................................................................................................................................................AGCCTGATTGGGCTGTGA..................................181.000.00--------------------------------------------------------1.00-----------------------------------
....................................................................................................................................ATGGGGATGGGAACTGGAG.....................................................................................1911.001.00----------------------------------------------------1.00---------------------------------------
......................................................................................................................................................................AGTTCTCCTGTCCCCCACAGAT................................................221.000.00-------1.00------------------------------------------------------------------------------------
....................TGAAGCCGACCAGTTGGG......................................................................................................................................................................................................1811.001.00-----------------------------------------------1.00--------------------------------------------
..................TCTGAAGCCGACCAGTTGGGCAAAATCTTTG...........................................................................................................................................................................................3111.001.00---------------1.00----------------------------------------------------------------------------
.............GAAACTCTGAAGCCGACCAGTTGGGCA....................................................................................................................................................................................................2711.001.00---1.00----------------------------------------------------------------------------------------
...............AACTCTGAAGCCGACCAGTTGGGC.....................................................................................................................................................................................................2411.001.00---1.00----------------------------------------------------------------------------------------
..............AAACTCTGAAGCCGACCAGTTGGGCAAA..................................................................................................................................................................................................2811.001.00---1.00----------------------------------------------------------------------------------------
.CTCTCTTCTGTGGAAACTC........................................................................................................................................................................................................................1911.001.00----------------------------------------------------------------1.00---------------------------
........CTGTGGAAACTCTGAAGCCGACCAGTTGGGC.....................................................................................................................................................................................................3111.001.00-------------1.00------------------------------------------------------------------------------
..................TCTGAAGCCGACCAGTTGGGC.....................................................................................................................................................................................................2111.001.00-------------------------------------1.00------------------------------------------------------
...................................................................................................................................CATGGGGATGGGAACTGGAGGACGA................................................................................2511.002.00------------------------1.00-------------------------------------------------------------------
............GGAAACTCTGAAGCCGACCAGTTGGGCAA...................................................................................................................................................................................................2911.001.00-----------------------------------------------------------1.00--------------------------------
..................TCTGAAGCCGACCAGTTGGGCA....................................................................................................................................................................................................2211.001.00---------------------1.00----------------------------------------------------------------------
.........................................................................................................................................................................................................TCCAGAGGATGACTGGCCTCGA.............2211.001.00------------1.00-------------------------------------------------------------------------------
...................................................................................................................................CATGGGGATGGGAACTGGAAAAT..................................................................................231.000.00---------------------------------------------------------------------------1.00----------------
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGATTT.......................2511.009.00------------------1.00-------------------------------------------------------------------------
..............AAACTCTGAAGCCGACCAGTTGGGTA....................................................................................................................................................................................................2611.003.00-------------------------------------------------1.00------------------------------------------
............................................................................................................................................................................................TGATTGGGCTGCCTCCAGAGGCT.........................231.000.00-------------------------------------------1.00------------------------------------------------
...........................................................................................................................................TGGGAACTGGAGGACCCTCCTGAC.........................................................................2411.001.00-1.00------------------------------------------------------------------------------------------
..............AAACTCTGAAGCCGACCAGTTGGGCATA..................................................................................................................................................................................................2811.002.00--1.00-----------------------------------------------------------------------------------------
..........................................................................................................................................ATGGGAACTGGAGGACCCTCCTG...........................................................................2311.001.00-1.00------------------------------------------------------------------------------------------
..............AAACTCTGAAGCCGACCAGTTGGGCAAAA.................................................................................................................................................................................................2911.001.00--1.00-----------------------------------------------------------------------------------------
............................................................................................................................................................TCCTGACCAGAGTTCTCCTGTCCCCCACAGA.................................................311.000.00------------------------------------------------------------------------------1.00-------------
..........................................................................................................................................................................................CCTGATTGGGCTGCCTCCAGAGGA..........................2411.001.00--------------------------1.00-----------------------------------------------------------------
.....................................................................................................................................................................GAGTTCTCCTGTCCCCCGATC..................................................211.000.00----------------------------------------------------------1.00---------------------------------
...............AACTCTGAAGCCGACCAGTTGGGCAA...................................................................................................................................................................................................2611.001.00--1.00-----------------------------------------------------------------------------------------
...................................................................................................................................CATGGGGATGGGAACTGGAGGAA..................................................................................231.000.00------------------------1.00-------------------------------------------------------------------
...............................................................................................................................................................................................TTGGGCTGCCTCCAGAGGACGAC......................2320.500.50-----0.50--------------------------------------------------------------------------------------
.........TGTGGAAACTCTGAAGCC.................................................................................................................................................................................................................1820.500.50------------------------------------0.50-------------------------------------------------------
...............................................................................................................................................................................................TTGGGCTGCCTCCAGAGGA..........................1920.500.50--0.50-----------------------------------------------------------------------------------------
........CTGTGGAAACTCTGAAGC..................................................................................................................................................................................................................1820.500.50-------------0.50------------------------------------------------------------------------------
.....................................................................................................................................TGGGGATGGGAACTGGAGG....................................................................................1920.500.50--------------0.50-----------------------------------------------------------------------------
..............................CAGTTGGGCAAAATCTTTGA..........................................................................................................................................................................................2030.330.33--------------------------------------------------------------------------------------0.33-----
................................................................................................................................................................................................TGGGCTGCCTCCAGAGG...........................1730.330.33---------------------0.33----------------------------------------------------------------------
......................................................................................................................................................................AGTTCTCCTGTCCCCCGCTC..................................................2040.250.25----------------------------------------------------------------------------------------0.25---
......................................................................................................................................................................AGTTCTCCTGTCCCCC......................................................1640.250.25----------------------0.25---------------------------------------------------------------------
..........GTGGAAACTCTGAAGC..................................................................................................................................................................................................................1650.200.20-----------------------------------------------------------------------------------------0.20--

Antisense strand
CCTCTCTTCTGTGGAAACTCTGAAGCCGACCAGTTGGGCAAAATCTTTGAGTAAGTGACCAACATGGGAGAAAAAGATTTTCTATTCTGAGTCCTCTTTCTGCTGAACCCAGGATGGCAACTGGCTCTGCCCATGGGGATGGGAACTGGAGGACCCTCCTGACCAGAGTTCTCCTGTCCCCCACAGCCTGATTGGGCTGCCTCCAGAGGATGACTGGCCTCGAGATGTATCCCTGC
......................................................................................................................................((((((((((.(((((((.....)))..)))).....)))))))))).......................................................
..............................................................................................................................127........................................................186................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		TAX577739(Rovira)
total RNA. (breast)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		GSM1105748AGO1(GSM1105748)
small RNA sequencing data. (ago1 hela)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR189787SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		GSM1105749AGO2(GSM1105749)
small RNA sequencing data. (ago2 hela)		SRR038859(GSM458542)
MM386. (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM359208(GSM359208)
hepg2_bindASP_hl_2. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330892(SRX091730)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450604(GSM450604)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM416733(GSM416733)
HEK293. (cell line)		SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR189785SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR037931(GSM510469)
293GFP. (cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		SRR029126(GSM416755)
143B. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR040012(GSM532897)
G648N. (cervix)		SRR189786SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)		SRR029131(GSM416760)
MCF7. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR189784SRR189783SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
...............AACTCTGAAGCCGACCAGTTGGGCAAAATCCC............................................................................................................................................................................................. 321.000.00-----1.00--------------------------------------------------------------------------------------
................................................................................AGCAGAAAGAGGACTCAGAATAGA.................................................................................................................................... 2411.001.00-------------------------------------------------------------------------------1.00------------
...................................................................................AGAAAGAGGACTCAGAAT....................................................................................................................................... 1811.001.00--------------------------------------------------------------1.00-----------------------------
.CTCTCTTCTGTGGAAACTTTT...................................................................................................................................................................................................................... 211.000.00-------------------------------------------------------------------1.00------------------------
................ACTCTGAAGCCGACCAGTTGGGCAAC.................................................................................................................................................................................................. 261.000.00-----1.00--------------------------------------------------------------------------------------
...................................................................................................................................................................GTGGGGGACAGGAGAACTCTG.................................................... 2111.001.00--------------------------------------1.00-----------------------------------------------------
...................................................................................................................................................................GGGACAGGAGAACTCTG........................................................ 1711.001.00--------------------1.00-----------------------------------------------------------------------
....................................................................................AGCAGAAAGAGGACTCAGAA.................................................................................................................................... 2011.001.00--------------------------------1.00-----------------------------------------------------------
...................................................................................................................................................................GACAGGAGAACTCTG.......................................................... 1580.750.75------------------------------------0.380.120.12---------------------------------------------------0.12-
...................................................................................................................................................................GGACAGGAGAACTCTG......................................................... 1620.500.50-------------------------------------------------------------------------------------0.50------
...................................................................................................................................................................................CAATCAGGCTGTGGG.......................................... 1540.250.25---------------------------------------------------------------------------------------0.25----
................................................................................................................................................................................ATCAGGCTGTGGGGGA............................................ 1690.110.11-------------------------------------------------------------------------------------------0.11