ID: uc001sof.1_intron_5_0_chr12_57883755_f
GENE: MARS(6)
chr12:57883705-57884039+


(1)
AGO2.ip 		(1)
BRAIN 		(7)
BREAST 		(13)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(2)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(27)
SKIN 		(2)
XRN.ip

Sense strand
TTTGTGGGGAGCCCTATACCCATTACTGCAAGATCCCGCCTACCTCCCTGGTGAGAACTGTGCATATCACTCCAACCCTAGGAGCTTGGTGTAGGGGTTACAGAATGGGCAGTAGAATACTGAGAACTCCCTTCAAGGTACAGCTTGACTGGGCAACTATAGCAGAAGATGGTTGAGGGAACTGGGGAAAGCAACTGGAGAAACCTCACAAAGAAGGGGAAAGATGCCCGCTCCTGCCTACCAGGTCCTTATGTTTGCTGATTTTCTTTTCTTCCATACCCACAGAGGAGCTGAGTGCCCTGCACAGCTGGTTCCAGACACTGAGTACCCAGGAA
..................................................((((...((.(((((....((((.......))))....))))).)).)))).(((.((((((((...)))))......)))))).........................................................................................................................................................................................................
..................................................51...................................................................................136.....................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR343335SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
................................................................................................................TAGAATACTGAGAACTGCAG...........................................................................................................................................................................................................2075.000.0039.0027.007.00--2.00------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACTTAG............................................................................................................................................................................................................193.000.002.00----1.00------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACTTAAG...........................................................................................................................................................................................................203.000.001.002.00----------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACTCCAG...........................................................................................................................................................................................................202.000.001.00----1.00------------------------------------------------------------
...................................................................................................ACAGAATGGGCAGTAGAATACCGAG...................................................................................................................................................................................................................252.000.00----2.00-------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACTCACCA..........................................................................................................................................................................................................2112.001.002.00-----------------------------------------------------------------
......................TTACTGCAAGATCCCGCCTACCTCCCTGGCG..........................................................................................................................................................................................................................................................................................312.000.00----2.00-------------------------------------------------------------
.........AGCCCTATACCCATTACTGCAAG...............................................................................................................................................................................................................................................................................................................2312.002.00-------2.00----------------------------------------------------------
......................TTACTGCAAGATCCCGCCTACCT..................................................................................................................................................................................................................................................................................................2312.002.00-----------------------2.00------------------------------------------
.............................................................................................................................................................................................................................................................................................AGGAGCTGAGTGCCCTGCACAGCTG.........................2512.002.00---------------------2.00--------------------------------------------
................................................................................................................TAGAATACTGAGAACTTTTG...........................................................................................................................................................................................................201.000.00--1.00---------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACTC..............................................................................................................................................................................................................1711.001.00-1.00----------------------------------------------------------------
..................................................................................AGCTTGGTGTAGGGGTTTTAT........................................................................................................................................................................................................................................211.000.00----------------------------1.00-------------------------------------
................................................................................................................TAGAATACTGAGAACTCACT...........................................................................................................................................................................................................2011.001.00-----1.00------------------------------------------------------------
...............................................CTGGTGAGAACTGTGCATATC...........................................................................................................................................................................................................................................................................2111.001.00-----------1.00------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................GCTGGTTCCAGACACTGAGTA........2111.001.00-----------------1.00------------------------------------------------
..................................................................................................TACAGAATGGGCAGTAGAATACTGAG...................................................................................................................................................................................................................2611.001.00---------------1.00--------------------------------------------------
..............................................................................................................AGTAGAATACTGAGAACTCCCTT..........................................................................................................................................................................................................2311.001.00-------------------1.00----------------------------------------------
..................................................................................................TACAGAATGGGCAGTAGAATACTG.....................................................................................................................................................................................................................2411.001.00------------------------1.00-----------------------------------------
................................................................................................................TAGAATACTGAGAACTCCCTTCAAGG.....................................................................................................................................................................................................2611.001.00------------------------------------------------1.00-----------------
................................................................................................................TAGAATACTGAGAACTTG.............................................................................................................................................................................................................181.000.001.00-----------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................AGGAGCTGAGTGCCCTGCACAGCTGGTTCCAG..................3211.001.00----1.00-------------------------------------------------------------
....................................................................................................CAGAATGGGCAGTAGAATACTGAGAACT...............................................................................................................................................................................................................2811.001.00-----------1.00------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................ACAGCTGGTTCCAGACACTG............2011.001.00----------------------------------------1.00-------------------------
....................................................GAGAACTGTGCATATCAGCT.......................................................................................................................................................................................................................................................................201.000.00-------1.00----------------------------------------------------------
.............................................................................................................................................................................................................................................................................................AGGAGCTGAGTGCCCTGCACAGCCGG........................261.000.00----1.00-------------------------------------------------------------
.................................................................................................TTACAGAATGGGCAGTAGAATACTGAGA..................................................................................................................................................................................................................2811.001.00--------------1.00---------------------------------------------------
......................................................................................TGGTGTAGGGGTTACAGAATGGGCAGTAGAATAC.......................................................................................................................................................................................................................3411.001.00---------------------------------------------------------------1.00--
....................................................................................................................ATACTGAGAACTCCCTT..........................................................................................................................................................................................................1711.001.00-----------------1.00------------------------------------------------
................................................................................................................TAGAATACTGAGAACTCCTG...........................................................................................................................................................................................................201.000.00-----1.00------------------------------------------------------------
.........AGCCCTATACCCATTACTG...................................................................................................................................................................................................................................................................................................................1911.001.00-------1.00----------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................TCCAGACACTGAGTACCCAGGAA2311.001.00--------------------------------------------1.00---------------------
......................................................................................................................................................................................TGGGGAAAGCAACTGGAGAAACC..................................................................................................................................2311.001.00--------------------------------------------------------1.00---------
...........................................................................................................................................................................................................................................................................................................................AGACACTGAGTACCCAGGA.1911.001.00--------------------------------------1.00---------------------------
...................CCATTACTGCAAGATCCCGCCTA.....................................................................................................................................................................................................................................................................................................2311.001.00----------------------------------------------------1.00-------------
..................................................................................................................................................................CAGAAGATGGTTGAGAG............................................................................................................................................................171.000.00------------------------------------------------------------1.00-----
................................................................................................................TAGAATACTGAGAACTCCCCATG........................................................................................................................................................................................................2311.001.001.00-----------------------------------------------------------------
...........CCCTATACCCATTACTGCCAG...............................................................................................................................................................................................................................................................................................................211.000.00-------1.00----------------------------------------------------------
................................................................................................................TAGAATACTGAGAACTCCC............................................................................................................................................................................................................1911.001.00--------------------------1.00---------------------------------------
..............................................................................................................................................................................................................................................................................................GGAGCTGAGTGCCCTGCACA.............................2011.001.00-----------1.00------------------------------------------------------
..........................TGCAAGATCCCGCCTACCTCCCTG.............................................................................................................................................................................................................................................................................................2411.001.00---------------------------------------------------1.00--------------
........................ACTGCAAGATCCCGCCTACCTCCCTGAGG..........................................................................................................................................................................................................................................................................................291.000.00---------------------------------------------1.00--------------------
................................................................................GGAGCTTGGTGTAGGGGTATGA.........................................................................................................................................................................................................................................221.000.00----------------------------------------------------------1.00-------
..................................................................................................................................CTTCAAGGTACAGCTTGACTGGGCAACTATAG.............................................................................................................................................................................3211.001.00---------------------------------1.00--------------------------------
.TTGTGGGGAGCCCTACCC............................................................................................................................................................................................................................................................................................................................181.000.00-------------------------------------------------------1.00----------
.....................ATTACTGCAAGATCCCGCCTAC....................................................................................................................................................................................................................................................................................................2211.001.00-------------------------------------------------------------1.00----
...............................................................................................................................................CTTGACTGGGCAACTATAGCAGAAGATGGTTGAG..............................................................................................................................................................3411.001.00--------------1.00---------------------------------------------------
....................CATTACTGCAAGATCC...........................................................................................................................................................................................................................................................................................................1611.001.00---------------1.00--------------------------------------------------
..................................................................................................................GAATACTGAGAACTCTG............................................................................................................................................................................................................171.000.00-----------------------------------1.00------------------------------
.................................................................................................TTACAGAATGGGCAGTAGAATACTGAGAACT...............................................................................................................................................................................................................3111.001.00--------------------------------1.00---------------------------------
.............................................................................................................................................................................TGAGGGAACTGGGGAAAGCAACTGGAG.......................................................................................................................................2711.001.00----1.00-------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACTCTCG...........................................................................................................................................................................................................2011.001.001.00-----------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................................GCTGGTTCCAGACACTGAGTACC......2311.001.00-----------------------------------------1.00------------------------
................................................................................................................TAGAATACTGAGAAC................................................................................................................................................................................................................1580.380.38--0.38---------------------------------------------------------------
..........................................................................................................GGGCAGTAGAATACTG.....................................................................................................................................................................................................................1630.330.33----------------------------------------------------------------0.33-
................................................................................................................TAGAATACTGAGAACAATG............................................................................................................................................................................................................1980.250.38-0.25----------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACCTAG............................................................................................................................................................................................................1980.250.380.120.12----------------------------------------------------------------
................................................................................................................TAGAATACTGAGAACCCCT............................................................................................................................................................................................................1980.250.380.120.12----------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................AGACACTGAGTACCC.....1540.250.25-----------------------------------------------------------------0.25
...............................................................................................................................................................................AGGGAACTGGGGAAAG................................................................................................................................................1670.140.14--------------------------0.14---------------------------------------
................................................................................................................TAGAATACTGAGAACATTC............................................................................................................................................................................................................1980.120.38--0.12---------------------------------------------------------------

Antisense strand
TTTGTGGGGAGCCCTATACCCATTACTGCAAGATCCCGCCTACCTCCCTGGTGAGAACTGTGCATATCACTCCAACCCTAGGAGCTTGGTGTAGGGGTTACAGAATGGGCAGTAGAATACTGAGAACTCCCTTCAAGGTACAGCTTGACTGGGCAACTATAGCAGAAGATGGTTGAGGGAACTGGGGAAAGCAACTGGAGAAACCTCACAAAGAAGGGGAAAGATGCCCGCTCCTGCCTACCAGGTCCTTATGTTTGCTGATTTTCTTTTCTTCCATACCCACAGAGGAGCTGAGTGCCCTGCACAGCTGGTTCCAGACACTGAGTACCCAGGAA
..................................................((((...((.(((((....((((.......))))....))))).)).)))).(((.((((((((...)))))......)))))).........................................................................................................................................................................................................
..................................................51...................................................................................136.....................................................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR343337SRR343336SRR343335SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR343334SRR444049(SRX128897)
Sample 9cDNABarcode: AF-PP-334: ACG CTC TTC C. (skin)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444052(SRX128900)
Sample 12cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR444048(SRX128896)
Sample 8cDNABarcode: AF-PP-333: ACG CTC TTC C. (skin)		SRR015447(SRR015447)
nuclear small RNAs. (breast)		SRR444057(SRX128905)
Sample 15cDNABarcode: AF-PP-334: ACG CTC TTC . (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR189787SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037937(GSM510475)
293cand2. (cell line)		SRR191403(GSM715513)
44genomic small RNA (size selected RNA from t. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577742(Rovira)
total RNA. (breast)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189786SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040020(GSM532905)
G699N_2. (cervix)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
...............................................................................................................................................................TAGCAGAAGATGGTTCCA.............................................................................................................................................................. 1849.000.00---7.00--5.00-4.003.003.00-3.002.00--1.00-2.00-2.00-2.00-1.001.00---1.001.001.00-----1.00-1.00------1.001.00-1.001.00--1.00---1.00-1.00--1.00---
...............................................................................................................................................................TAGCAGAAGATGGTTGCCA............................................................................................................................................................. 192.000.00----------------------------------1.00-------1.00-----------------------
...............................................................................................................................................................TAGCAGAAGATGGTTCTA.............................................................................................................................................................. 181.000.00---1.00--------------------------------------------------------------
..............................................................................................................................................................ATAGCAGAAGATGGTCA................................................................................................................................................................ 171.000.00---------1.00--------------------------------------------------------
............CCTATACCCATTACTGCAGG............................................................................................................................................................................................................................................................................................................... 201.000.00------------------------------------------------------1.00-----------
............................................................................................AGGGGTTACAGAATGGGCTCA.............................................................................................................................................................................................................................. 211.000.00---------------------------1.00--------------------------------------
...............................................................................................................................................................TAGCAGAAGATGGTTCCG.............................................................................................................................................................. 181.000.00-------------------1.00----------------------------------------------
...............................................................................................................................................................TAGCAGAAGATGGTTGACCA............................................................................................................................................................ 201.000.00-------------1.00----------------------------------------------------
.................................................................................................................................................................................................................................................................................................GCTGAGTGCCCTGCACTCA........................... 191.000.00----1.00-------------------------------------------------------------
..............................................................................................................................................................ATAGCAGAAGATGGTTCGG.............................................................................................................................................................. 191.000.00----------------1.00-------------------------------------------------
.................................................................................................................................................................................................................................TAAGGACCTGGTAGGCAGGAGCGGGC.................................................................................... 2611.001.00-------------------------1.00----------------------------------------
...............................................................................................................................................................TAGCAGAAGATGGTTAGA.............................................................................................................................................................. 181.000.00-------------------------------------------1.00----------------------
.............................................................................................................................................AGCTTGACTGGGCAACTACTGT............................................................................................................................................................................ 221.000.00------------------------------------1.00-----------------------------