ID: uc001slu.3_intron_6_0_chr12_57066850_r.5p
GENE: (1)
chr12:57081582-57081831-


(1)
AGO1.ip OTHER.mut 		(10)
B-CELL 		(1)
BRAIN 		(7)
BREAST 		(19)
CELL-LINE 		(2)
CERVIX 		(1)
FIBROBLAST 		(3)
HELA 		(3)
LIVER 		(2)
OTHER 		(6)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
CCAGAGAGGCCCGCCCACCAGTTCGCCCGTCCCCCTGCCCCGTTCACAATGTGAGTGCGACACCCCGCCGAGGGAAGGTCGCCGAGTGAGGCCGAGGCCGCGTTGGGGGCTCCCTGGAAGCGGCCCCCTAGCCTTTCTCGCATCGGTGGTGGCAGTCGTTCCTGCCTGGGGGCGGGAGGTCCAGGATCCTTGTTCCGGTTACCGTTGGCGGGTGGAGGACATTTTTCCTCCAGATGTCTGCTTCCCCCAC
...................................................................((.(((((..(((.((((.((.(((....))).)))))).)))))))))).....................................................................................................................................
.................................................................66.....................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
.......................................................................................................................................................................................................................AGGACATTTTTCCTCCAGA................1926.006.006.00--------------------------------------------------------
......................................................................AGGGAAGGTCGCCGAGTG..................................................................................................................................................................1815.005.00---2.002.00-1.00--------------------------------------------------
...............................................................CCCGCCGAGGGAAGGTCGCCGAG....................................................................................................................................................................2314.004.00----1.00----------1.00--1.00--------------------1.00-----------------
..............................................................................................AGGCCGCGTTGGGGGCTCCCTGG.....................................................................................................................................2314.004.00-4.00-------------------------------------------------------
...............................................................CCCGCCGAGGGAAGGTCG.........................................................................................................................................................................1813.003.003.00--------------------------------------------------------
........................................................................................................................................................................................................ACCGTTGGCGGGTGGAGGA...............................1912.002.00--------------------------------1.00-------1.00----------------
...................AGTTCGCCCGTCCCCC.......................................................................................................................................................................................................................1612.002.00-------2.00-------------------------------------------------
...................................................................................................................................CCTTTCTCGCATCGGT.......................................................................................................1612.002.00-------------2.00-------------------------------------------
..............................................................CCCCGCCGAGGGAAGGTCGCCGAGTG..................................................................................................................................................................2612.002.00-------------------------------------------------1.00--1.00----
...........................................................................................................................................................................................................GTTGGCGGGTGGAGGACATTA..........................212.000.00-2.00-------------------------------------------------------
......................................................GTGCGACACCCCGCCGAGGGAAG.............................................................................................................................................................................2312.002.00-----2.00---------------------------------------------------
.......................................................................GGGAAGGTCGCCGAGTGAG................................................................................................................................................................1912.002.00--2.00------------------------------------------------------
...........................................................ACACCCCGCCGAGGGAAGGTCGCCGAG....................................................................................................................................................................2712.002.00--2.00------------------------------------------------------
......................TCGCCCGTCCCCCTGCCCCG................................................................................................................................................................................................................2012.002.00--------------2.00------------------------------------------
........................................................................................AGGCCGAGGCCGCGTTGGG...............................................................................................................................................1912.002.00---1.00--------1.00--------------------------------------------
....................GTTCGCCCGTCCCCCGA.....................................................................................................................................................................................................................171.000.00---------1.00-----------------------------------------------
.............................................................................GTCGCCGAGTGAGGCCGAGGCCGC.....................................................................................................................................................2411.001.00--------------------------------------------------1.00------
.................................................................................CCGAGTGAGGCCGAGGCCG......................................................................................................................................................1911.001.00-----------------------------------------1.00---------------
......................................CCCGTTCACAATGTGAGTGC................................................................................................................................................................................................2011.001.00---------------------------------------------------1.00-----
...........................................................ACACCCCGCCGAGGGAAGGTCGCCG......................................................................................................................................................................2511.001.00------1.00--------------------------------------------------
..............................................................................................................................................................................................TGTTCCGGTTACCGTTGGCGG.......................................2111.001.00--------------------1.00------------------------------------
..............................................................................................................................................................................................TGTTCCGGTTACCGTTGGCGGGTGG...................................2511.001.00--------1.00------------------------------------------------
...................................................................CCGAGGGAAGGTCGCCGAGT...................................................................................................................................................................2011.001.00----------1.00----------------------------------------------
..................................CTGCCCCGTTCACAATGTG.....................................................................................................................................................................................................1911.001.00---1.00-----------------------------------------------------
........................................................................................AGGCCGAGGCCGCGTTGGGGG.............................................................................................................................................2111.001.00--1.00------------------------------------------------------
......................................................................AGGGAAGGTCGCCGAGTGA.................................................................................................................................................................1911.001.00------------1.00--------------------------------------------
....................GTTCGCCCGTCCCCCGT.....................................................................................................................................................................................................................171.000.00----------------1.00----------------------------------------
.................................................................................................................................AGCCTTTCTCGCATCGGTGGCGGC.................................................................................................241.000.00-----------------------------------1.00---------------------
...............................................................CCCGCCGAGGGAAGGTCGCCGAGTG..................................................................................................................................................................2511.001.00------------------------1.00--------------------------------
.............................................................ACCCCGCCGAGGGAAGGTCGCCGAG....................................................................................................................................................................2511.001.00---------------------------------------------1.00-----------
...............................................................CCCGCCGAGGGAAGGTCGCCGAGTGA.................................................................................................................................................................2611.001.00----------1.00----------------------------------------------
................................................................CCGCCGAGGGAAGGTCG.........................................................................................................................................................................1711.001.00-------------------1.00-------------------------------------
........................................................................GGAAGGTCGCCGAGTGAGGC..............................................................................................................................................................2011.001.00------------------------------------------------1.00--------
...............................................................CCCGCCGAGGGAAGGTCGCCGA.....................................................................................................................................................................2211.001.00---1.00-----------------------------------------------------
................................................................................................GCCGCGTTGGGGGCTCCCT.......................................................................................................................................1911.001.00-----------------------------1.00---------------------------
..................................................................................................CGCGTTGGGGGCTCCCTGGAAGC.................................................................................................................................2311.001.00-----------------------------------------------1.00---------
.............................................................................................................................................................................................................TGGCGGGTGGAGGACATTT..........................1911.001.00------------------------------------1.00--------------------
........................................................................................................................................................................................................ACCGTTGGCGGGTGGAGGACA.............................2111.001.00-------------------------------1.00-------------------------
...........................................................ACACCCCGCCGAGGGAAGGTCGCCGCG....................................................................................................................................................................2711.001.00--1.00------------------------------------------------------
......................TCGCCCGTCCCCCTGTCT..................................................................................................................................................................................................................181.000.00----------------------------1.00----------------------------
.....................................................................................................................................................................................................GTTACCGTTGGCGGGTGGAGGACATT...........................2611.001.00-------------------------------------------1.00-------------
...........................................................................................................................................................................................................GTTGGCGGGTGGAGGACATTTTT........................2311.001.00----------------------------------1.00----------------------
......................................................................AGGGAAGGTCGCCGAGTGAG................................................................................................................................................................2011.001.00----------------------1.00----------------------------------
...........................................................ACACCCCGCCGAGGGAAGGTCGCC.......................................................................................................................................................................2411.001.00-----------------------1.00---------------------------------
............................................................................................................................................................................................................TTGGCGGGTGGAGGACC.............................171.000.00----------------------------------------------1.00----------
...........................................................................................................................................................................................................GTTGGCGGGTGGAGGACATTTTTA.......................2411.001.00-------------------------1.00-------------------------------
..............................................................................................................................................TCGGTGGTGGCAGTCGTTCC........................................................................................2011.001.00--------1.00------------------------------------------------
.......................................................................................................................................................................................................................................AGATGTCTGCTTCCCCCAC1911.001.00--------------------------------------1.00------------------
...............................................................CCCGCCGAGGGAAGGTCGCCGAGTGAG................................................................................................................................................................2711.001.00--------------------------1.00------------------------------
..................................................GTGAGTGCGACACCCCGCCGA...................................................................................................................................................................................2111.001.00----1.00----------------------------------------------------
...................................................................................................GCGTTGGGGGCTCCCTGGAAGCGG...............................................................................................................................2411.001.00------------------------------1.00--------------------------
......................................CCCGTTCACAATGTGAG...................................................................................................................................................................................................1711.001.00-------------------------------------1.00-------------------
......................................CCCGTTCACAATGTGAGTG.................................................................................................................................................................................................1911.001.00--------------------------------------------1.00------------
..............................................................CCCCGCCGAGGGAAGGTCGCCG......................................................................................................................................................................2211.001.00-----------------1.00---------------------------------------
.......................................................................GGGAAGGTCGCCGAGTGA.................................................................................................................................................................1811.001.00------1.00--------------------------------------------------
.........................................GTTCACAATGTGAGTG.................................................................................................................................................................................................1620.500.50------------------------------------------------------0.50--
.............................................................ACCCCGCCGAGGGAAGGT...........................................................................................................................................................................1820.500.50--------------------------------------------------------0.50
.............................................................ACCCCGCCGAGGGAAGG............................................................................................................................................................................1720.500.50-------------------------------------------------------0.50-
.................................................................................................................CTGGAAGCGGCCCCC..........................................................................................................................1520.500.50-----------------------------------------------------0.50---
................................CCCTGCCCCGTTCAC...........................................................................................................................................................................................................1580.120.12-----------------------------------------------------0.12---

Antisense strand
CCAGAGAGGCCCGCCCACCAGTTCGCCCGTCCCCCTGCCCCGTTCACAATGTGAGTGCGACACCCCGCCGAGGGAAGGTCGCCGAGTGAGGCCGAGGCCGCGTTGGGGGCTCCCTGGAAGCGGCCCCCTAGCCTTTCTCGCATCGGTGGTGGCAGTCGTTCCTGCCTGGGGGCGGGAGGTCCAGGATCCTTGTTCCGGTTACCGTTGGCGGGTGGAGGACATTTTTCCTCCAGATGTCTGCTTCCCCCAC
...................................................................((.(((((..(((.((((.((.(((....))).)))))).)))))))))).....................................................................................................................................
.................................................................66.....................................................121...............................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR037937(GSM510475)
293cand2. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR189782SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR207114(GSM721076)
"IP against AGO 1 & 2, RRP40 knockdown". (ago1/2 RRP40 cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR040028(GSM532913)
G026N. (cervix)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		TAX577740(Rovira)
total RNA. (breast)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR015364(GSM380329)
Plasma B cells (PC44). (B cell)		SRR038855(GSM458538)
D10. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038861(GSM458544)
MM466. (cell line)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR038863(GSM458546)
MM603. (cell line)		SRR191591(GSM715701)
53genomic small RNA (size selected RNA from t. (breast)		TAX577738(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR040024(GSM532909)
G613N. (cervix)		SRR038862(GSM458545)
MM472. (cell line)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)
...................................TGCCCCGTTCACAATGTCTG................................................................................................................................................................................................... 201.000.00---------1.00-----------------------------------------------
.......................CGCCCGTCCCCCTGCCCCGTGACT........................................................................................................................................................................................................... 241.000.00---------------------1.00-----------------------------------
...........................................................................................................GGCTCCCTGGAAGCGAAA............................................................................................................................. 181.000.00-----1.00---------------------------------------------------
............................................................................................CGAGGCCGCGTTGGGCGG............................................................................................................................................ 181.000.00---------------------------1.00-----------------------------
.........................................................................................................................................AACGACTGCCACCACCGATGCGA.......................................................................................... 2311.001.00---------------------------------1.00-----------------------
..........................................................................................................................................................................................CGGTAACCGGAACAAGGA.............................................. 1811.001.001.00--------------------------------------------------------
.................................................................................................................................................................................GGTCCAGGATCCTTGTTCAT..................................................... 201.000.00-----------1.00---------------------------------------------
................................................................................................................................................................................AGGTCCAGGATCCTTGTTCT...................................................... 201.000.00-----------1.00---------------------------------------------
...................AGTTCGCCCGTCCCCCCTG.................................................................................................................................................................................................................... 1911.000.00------------------------------------------1.00--------------