ID: uc001skt.1_intron_8_0_chr12_56679746_r.3p
GENE: CS(2)
chr12:56679696-56679945-


(3)
AGO2.ip 		(1)
AGO3.ip 		(1)
B-CELL 		(3)
BRAIN 		(2)
BREAST 		(23)
CELL-LINE 		(3)
CERVIX 		(8)
HEART 		(3)
HELA 		(10)
LIVER 		(3)
OTHER 		(1)
OVARY 		(1)
RRP40.ip 		(15)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(2)
XRN.ip

Sense strand
CATTTGTGCAGAGTAGTTGACCAGACTTCCCTGGCAGATAAAGCCAGCTTCTAAAAAGCAAATTCTTGACACACCTACTTTGCAGGAAATCTAATAAACTTTTAGACCATTGCTTAGTCCTTCTACTTTTCTTTTTAGAATTTGAAAGACATATTGGCTGACCTGATACCTAAGGAGCAGGCCAGAATTAAGACTTTCAGGCAGCAACATGGCAAGACGGTGGTGGGCCAAATCACTGTGGACATGGTAA
....................................................................................................................(((.(((.....((((....))))...))).)))...((((((..(((........)))....)))))).................................................................
..................................................................................................................115.....................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		TAX577580(Rovira)
total RNA. (breast)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532890(GSM532890)
G576T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037938(GSM510476)
293Red. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
...................................................................................................................................................................TGATACCTAAGGAGCAGGCC...................................................................2016.006.003.00----1.00------1.00-----1.00----------------------------------------------------------
...............................................................................................................................................................................................GACTTTCAGGCAGCAACATG.......................................2015.005.00-------5.00---------------------------------------------------------------------
.........................................................................................................................................................TTGGCTGACCTGATACC................................................................................1713.003.00--1.00-1.00----------------------------------------1.00-------------------------------
.......................................................................................................................CTTCTACTTTTCTTTTTTTG...............................................................................................................203.000.00---------------1.00---1.00---------------------------------1.00-----------------------
......................................................................................................................................................ATATTGGCTGACCTGATACCTAAGGAGCAGGC....................................................................3213.003.00------3.00----------------------------------------------------------------------
............................................................................................................................................TTTGAAAGACATATTGGCTGACCTGATACC................................................................................3013.003.003.00----------------------------------------------------------------------------
...................................................................................................................................................GACATATTGGCTGACCTGATACC................................................................................2313.003.00-1.001.00---------1.00----------------------------------------------------------------
..................................................................................................................................................AGACATATTGGCTGACCTGATAC.................................................................................2313.003.00---3.00-------------------------------------------------------------------------
..................................................................................................................................................................CTGATACCTAAGGAGCAGGCC...................................................................2113.003.00-1.00----------1.00------------------------1.00---------------------------------------
.....................................................................................................................................................CATATTGGCTGACCTGAT...................................................................................1832.332.33----------2.33------------------------------------------------------------------
.......................................................................................................................................................TATTGGCTGACCTGATA..................................................................................1722.002.00----------2.00------------------------------------------------------------------
...................................................................................................................................................GACATATTGGCTGACCTGATAC.................................................................................2212.002.00---------1.00----------------------------------------1.00--------------------------
..................................................................................................................................................AGACATATTGGCTGACCTGATACC................................................................................2412.002.00---------2.00-------------------------------------------------------------------
........................................................................................................................................................ATTGGCTGACCTGATACC................................................................................1812.002.001.00---1.00------------------------------------------------------------------------
.................................................................................................................................................AAGACATATTGGCTGACCTGATAC.................................................................................2412.002.00----1.00----------------------1.00-------------------------------------------------
.......................................................................................................................................................TATTGGCTGACCTGATACC................................................................................1912.002.00-1.00---1.00-----------------------------------------------------------------------
......................................................................................................................................................................................CAGAATTAAGACTTTCAGGCAGCAAC..........................................2612.002.00-2.00---------------------------------------------------------------------------
.............................................................................................................................................TTGAAAGACATATTGGCTGACCTGATAC.................................................................................2812.002.00----2.00------------------------------------------------------------------------
..........................................................................................................................................................TGGCTGACCTGATACC................................................................................1612.002.001.001.00---------------------------------------------------------------------------
...........................................................................................................................................................................................TTAAGACTTTCAGGCAGCAACAT........................................2312.002.00--2.00--------------------------------------------------------------------------
........................................................................................................................................................ATTGGCTGACCTGATACCTAAGGAGCAGGC....................................................................3012.002.00-1.00-----------------------------------------------------1.00---------------------
........................................................................................................................................................................CCTAAGGAGCAGGCCAGAATTAAGACTTTC....................................................3012.002.00--------------------2.00--------------------------------------------------------
..................................................................................................................................................................CTGATACCTAAGGAGCAGGC....................................................................2012.002.00-2.00---------------------------------------------------------------------------
.............................................................................................................................................................................................AAGACTTTCAGGCAGCAACA.........................................2012.002.00---2.00-------------------------------------------------------------------------
........................................................................................................................................................ATTGGCTGACCTGATACCTA..............................................................................2012.002.00-----------2.00-----------------------------------------------------------------
..........................................................................................................................................................TGGCTGACCTGATACCTAAGGAGCAGGC....................................................................2812.002.00-----2.00-----------------------------------------------------------------------
..............................................................................................................................................TGAAAGACATATTGGCTGACCTGATACC................................................................................2812.002.002.00----------------------------------------------------------------------------
........................................................................................................................................AGAATTTGAAAGACATATTGGCTGA.........................................................................................2521.501.50----------------------1.50------------------------------------------------------
...........................................................................................................................................................................AAGGAGCAGGCCAGAATT.............................................................1841.501.500.25--0.75--------------------------------------------------------------------0.25-0.25--
.......................................................................................................................................................................................AGAATTAAGACTTTCAGGCAGCAACATG.......................................2811.001.001.00----------------------------------------------------------------------------
............................................................................................................................................................................................TAAGACTTTCAGGCAGCAACATGGCAAG..................................2811.001.00--1.00--------------------------------------------------------------------------
................................................................................................................................................AAAGACATATTGGCTGTGCT......................................................................................201.000.00-----------------------1.00-----------------------------------------------------
............................................................................................................................................................................................TAAGACTTTCAGGCAGCAACA.........................................2111.001.00--1.00--------------------------------------------------------------------------
..................................................................................................................................................AGACATATTGGCTGACCTGATACCTAAG............................................................................2811.001.00-------------------------------------------------1.00---------------------------
..........GAGTAGTTGACCAGACTTCCCTGGCA......................................................................................................................................................................................................................2611.001.00------------------1.00----------------------------------------------------------
..............................................................................................................................................................................................AGACTTTCAGGCAGCAACATGG......................................2211.001.00----------------------------------------------------1.00------------------------
...........................................................................................................................................................................................TTAAGACTTTCAGGCAGCAACATGGCAA...................................2811.001.00--1.00--------------------------------------------------------------------------
...............................................................................................................................................GAAAGACATATTGGCTGACCTGATACC................................................................................2711.001.00-1.00---------------------------------------------------------------------------
.........................................................................................................................................................TTGGCTGACCTGATACCTAAGGAGCAGGC....................................................................2911.001.00-----1.00-----------------------------------------------------------------------
...........................................................................................................................................................................AAGGAGCAGGCCAGAATTAAGACTTTC....................................................2711.001.00-------------------------1.00---------------------------------------------------
......................................................................................................................................................ATATTGGCTGACCTGATACCT...............................................................................2111.001.001.00----------------------------------------------------------------------------
..................................................................................................................................................................CTGATACCTAAGGAGCAGGCCAGA................................................................2411.001.00---------------------------------------1.00-------------------------------------
..................................................................................................................................................AGACATATTGGCTGACCTGATA..................................................................................2221.001.00---1.00-------------------------------------------------------------------------
.............................................................................................................................................................................................AAGACTTTCAGGCAGCAACATGGCA....................................2511.001.001.00----------------------------------------------------------------------------
......................................................................................................................................................................................................................AGACGGTGGTGGGCCAA...................1711.001.00--------1.00--------------------------------------------------------------------
.......................................................................................................................................................TATTGGCTGACCTGATACCTAAGGAGCAGGCC...................................................................3211.001.001.00----------------------------------------------------------------------------
..............................................................................................................................................................................................................ACATGGCAAGACGGTGGTGGGC......................2211.001.00---------1.00-------------------------------------------------------------------
....................................................................................................................................................ACATATTGGCTGACCCCC....................................................................................181.000.00-----------------------------1.00-----------------------------------------------
...................................................................................................................................................................TGATACCTAAGGAGCAGGC....................................................................1911.001.00--1.00--------------------------------------------------------------------------
......................................................................................................................CCTTCTACTTTTCTTTTTTTTG..............................................................................................................221.000.00---------------------------------------------------------1.00-------------------
...................................................................................................................................................................................................................GCAAGACGGTGGTGGCTGT....................191.000.00------------------------------------1.00----------------------------------------
..........................................................................................................................................................................TAAGGAGCAGGCCAGAATTAAGACTT......................................................2611.001.00-------------1.00---------------------------------------------------------------
............................................................................................................................................................................AGGAGCAGGCCAGAATTAAGACTTTCAGGCAGCA............................................3411.001.00--------1.00--------------------------------------------------------------------
...........................................................................................................................................................................AAGGAGCAGGCCAGAATTAAGACTTTCAGGCA...............................................3211.001.001.00----------------------------------------------------------------------------
.........................................................................................................................................................TTGGCTGACCTGATACCTAAGGAGCAGGCC...................................................................3011.001.00-----------------------------------1.00-----------------------------------------
........................................................................................................................................................ATTGGCTGACCTGATACCTAAGG...........................................................................2311.001.00------------------------------------------------1.00----------------------------
.......................................................................................................................................................................................................................GACGGTGGTGGGCCAAATC................1911.001.00------------------------------1.00----------------------------------------------
.................................................................................................................................................AAGACATATTGGCTGACCTGATACC................................................................................2511.001.00------------------------------------------1.00----------------------------------
......................................................................................................................................................ATATTGGCTGACCTGATACC................................................................................2011.001.001.00----------------------------------------------------------------------------
................................................................................................................................................................................................................ATGGCAAGACGGTGGTGGGCCAAATCACCG............301.000.00--------------1.00--------------------------------------------------------------
...TTGTGCAGAGTAGTTGACCA...................................................................................................................................................................................................................................2011.001.00--------------------------------------------1.00--------------------------------
...........................................................................................................................................................................................TTAAGACTTTCAGGCAGCAAC..........................................2111.001.00--------------------------------------------------------1.00--------------------
.........................................................................................................................................................................................................................................CACTGTGGACATGGTA.1611.001.00------------------------1.00----------------------------------------------------
......................................................................................................................CCTTCTACTTTTCTTTATCT................................................................................................................201.000.00-------------------1.00---------------------------------------------------------
.........................................................................................................................................................................................................................CGGTGGTGGGCCAAATCACTGTGGACATGATGT331.000.00--------1.00--------------------------------------------------------------------
.................................................TCTAAAAAGCAAATTGCAG......................................................................................................................................................................................191.000.00----------------------------1.00------------------------------------------------
......................................................................................................................................................................................CAGAATTAAGACTTTCAGGCAGCA............................................2411.001.00---1.00-------------------------------------------------------------------------
...................................................................................................................................................................TGATACCTAAGGAGCAGG.....................................................................1811.001.00----1.00------------------------------------------------------------------------
....................................................................................................................................................................GATACCTAAGGAGCAGGCCAGAATTA............................................................2611.001.00---------------------1.00-------------------------------------------------------
................................................................................................................................................................................................................ATGGCAAGACGGTGGTGGGCCAAATCACT.............2911.001.00------1.00----------------------------------------------------------------------
....................................................................................................................................................ACATATTGGCTGACCTGATACC................................................................................2211.001.00-1.00---------------------------------------------------------------------------
.........................................................................................................................................................................................AATTAAGACTTTCAGGCAGCAACATGGCAAGACGG..............................3511.001.00------1.00----------------------------------------------------------------------
................................................................................................................................................AAAGACATATTGGCTGACTGAT....................................................................................221.000.00---------------------------------------------------1.00-------------------------
.............................................................................................................................................................................................................AACATGGCAAGACGGTG............................1711.001.00-1.00---------------------------------------------------------------------------
.................................................................................................................................................................................................................TGGCAAGACGGTGGTGGG.......................1811.001.00---------------------------------1.00-------------------------------------------
.......................................................................................................................................................................................AGAATTAAGACTTTCAGGCAGC.............................................2211.001.00--1.00--------------------------------------------------------------------------
................................................................................................................................................AAAGACATATTGGCTGACCTGATACC................................................................................2611.001.00-1.00---------------------------------------------------------------------------
......................................................................................................................................................ATATTGGCTGACCTGATACCTAAGGAGCA.......................................................................2911.001.00---1.00-------------------------------------------------------------------------
.........................................................................................................................................................................CTAAGGAGCAGGCCAGAATTAAGACT.......................................................2611.001.00-1.00---------------------------------------------------------------------------
.......................................................................................................................................................TATTGGCTGACCTGATACCTAAGGAGC........................................................................2711.001.00-1.00---------------------------------------------------------------------------
.............................................................................................................................................................................................AAGACTTTCAGGCAGCAACATG.......................................2211.001.00--------------------------1.00--------------------------------------------------
..................................................................................................................................................................CTGATACCTAAGGAGCAGGCCAGAATTA............................................................2811.001.00-------------------------------------------1.00---------------------------------
...................................................................................................................AGTCCTTCTACTTTTCTTTTT..................................................................................................................2111.001.00------------------------------------------------------1.00----------------------
..............................................................................................................................................................................................AGACTTTCAGGCAGCAACATGGCA....................................2411.001.00--------------1.00--------------------------------------------------------------
.........................................................................................................................................................................................AATTAAGACTTTCAGGCAGCAA...........................................2211.001.00-----------------------------------------------1.00-----------------------------
.........................................................................................................................................GAATTTGAAAGACATATTGGCTGACCTGATACC................................................................................3311.001.001.00----------------------------------------------------------------------------
.......................................................................................................................................................TATTGGCTGACCTGATAC.................................................................................1811.001.00-1.00---------------------------------------------------------------------------
.............................................................................................................................................................................................AAGACTTTCAGGCAGCAACGGC.......................................221.000.00----------------------------------------------1.00------------------------------
................................................................................................................................................................................................................................GGGCCAAATCACTGTGG.........1731.001.00------0.33----0.67-----------------------------------------------------------------
.............................................................................................................................................................................................AAGACTTTCAGGCAGCAACATGGC.....................................2411.001.00-----1.00-----------------------------------------------------------------------
.........................................................................................................................................................................................AATTAAGACTTTCAGGCAG..............................................1911.001.00----------------1.00------------------------------------------------------------
...............................................................................................................................................................................................................CATGGCAAGACGGTGGTGGG.......................2011.001.00---------------------1.00-------------------------------------------------------
.......................................................................................................................................................................................AGAATTAAGACTTTCAGGCAG..............................................2111.001.00---------1.00-------------------------------------------------------------------
............................................................................................................................................TTTGAAAGACATATTGGCTGACCTGATA..................................................................................2821.001.000.50------------0.50---------------------------------------------------------------
.....................................................................................................................................................................................................................................AAATCACTGTGGACATG....1731.001.00----------------------0.33--0.33------------------------------------------0.33--------
..........................................................................................................................................................................TAAGGAGCAGGCCAGAATTAAGACTTT.....................................................2711.001.00----------------------------------------------------------1.00------------------
.....................................................................................................................................................CATATTGGCTGACCTGATA..................................................................................1921.001.00-------1.00---------------------------------------------------------------------
.......................................................................................................................CTTCTACTTTTCTTTTTTG................................................................................................................191.000.00---------------1.00-------------------------------------------------------------
............................................................................................................................................................................................TAAGACTTTCAGGCAGCAACATGGCA....................................2611.001.00-------------1.00---------------------------------------------------------------
.................................................................................................................................................................................................CTTTCAGGCAGCAACATGGCAAGACGG..............................2711.001.00------1.00----------------------------------------------------------------------
............................................................................................................................................................GCTGACCTGATACCTAAGGAGCAGGC....................................................................2611.001.00-1.00---------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAGACGGTGGTGGGCCAAA..................2011.001.00----------------------------------1.00------------------------------------------
.............................................................................................................................................TTGAAAGACATATTGGCTGACCTGATACC................................................................................2911.001.001.00----------------------------------------------------------------------------
..................................................................................................................................................AGACATATTGGCTGACCTGATAA.................................................................................2321.001.00---1.00-------------------------------------------------------------------------
............................................................................................................................................................................................................CAACATGGCAAGACGGTGGTGGGCCAA...................2711.001.00----------------1.00------------------------------------------------------------
......................................................................................................................................................................................CAGAATTAAGACTTTCAGGCAGCG............................................241.000.00---1.00-------------------------------------------------------------------------
...................................................................................................................................................................................................................GCAAGACGGTGGTGGGC......................1711.001.00----------------------------------------1.00------------------------------------
.............................................................................................................................................................................................AAGACTTTCAGGCAGCAACATGGCAA...................................2611.001.00--1.00--------------------------------------------------------------------------
..........................................................................................................................................AATTTGAAAGACATATTGGCTGACCTGATACC................................................................................3211.001.001.00----------------------------------------------------------------------------
...........................................................................................................................................................................AAGGAGCAGGCCAGAATTAAGACTTTCAGGCAG..............................................3311.001.00--------1.00--------------------------------------------------------------------
..........................................................................................................................................AATTTGAAAGACATATTGGCTGACCTGAT...................................................................................2930.670.67-0.33--0.33------------------------------------------------------------------------
..........................................................................................................................................................................TAAGGAGCAGGCCAGAATTAAGAC........................................................2430.670.67-0.330.33--------------------------------------------------------------------------
..........................................................................................................................................AATTTGAAAGACATATTGGCTGACCTG.....................................................................................2730.670.67-0.67---------------------------------------------------------------------------
....................................................................................................................................................................................................................................CAAATCACTGTGGACATG....1830.670.67-----------0.67-----------------------------------------------------------------
.........................................................................................................................................GAATTTGAAAGACATATTGGCTGACCTGAT...................................................................................3030.670.67--0.33--0.33-----------------------------------------------------------------------
................................................................................................................................................AAAGACATATTGGCTGA.........................................................................................1750.600.60-------------------------------------------------------------0.60---------------
...................................................................................................................................................GACATATTGGCTGACCTGATA..................................................................................2120.500.50--------0.50--------------------------------------------------------------------
.........................................................................................................................................................................................AATTAAGACTTTCAGGCA...............................................1820.500.50------------------------------------------------------------0.50----------------
.........................................................................................................................................................................CTAAGGAGCAGGCCAGAATT.............................................................2020.500.50-----------------------------------------------------------------0.50-----------
...............................................................................................................................................GAAAGACATATTGGCTGACCTGATA..................................................................................2520.500.50----0.50------------------------------------------------------------------------
.............................................................................................................................................................................................................................GGTGGGCCAAATCACTGTGGACA......2320.500.50--------0.50--------------------------------------------------------------------
........................................................................................................................................................................CCTAAGGAGCAGGCCAGAATTAAG..........................................................2420.500.50---------------------------------------------------------------0.50-------------
........................................................................................................................................................................CCTAAGGAGCAGGCCAGAA...............................................................1920.500.50------------------------------------------------------------------0.50----------
..........................................................................................................................................................................................................................GGTGGTGGGCCAAATCACTGTGGACATG....2820.500.50--------0.50--------------------------------------------------------------------
.......................................................................................................................................................................................................................................ATCACTGTGGACATGGT..1720.500.50--------------------------------------------------------------0.50--------------
.....................................................................................................................................................................ATACCTAAGGAGCAGGCCA..................................................................1920.500.50-------------------------------------------------------------------0.50---------
.........................................................................................................................................................................CTAAGGAGCAGGCCAGAATTAAG..........................................................2320.500.50----0.50------------------------------------------------------------------------
.........................................................................................................................................................................CTAAGGAGCAGGCCAGAATTAAGAC........................................................2520.500.50----0.50------------------------------------------------------------------------
........................................................................................................................................................................CCTAAGGAGCAGGCCAGA................................................................1820.500.50----------------------------------------------------------------0.50------------
..............................................................................................................................................TGAAAGACATATTGGCTGACCTGATA..................................................................................2620.500.50-----------------------------------------------------------0.50-----------------
..........................................................................................................................................................................TAAGGAGCAGGCCAGA................................................................1650.400.40-----0.40-----------------------------------------------------------------------
............................................................................................................................................TTTGAAAGACATATTGGCTGACCTGAT...................................................................................2730.330.33-------------0.33---------------------------------------------------------------
.............................................................................................................................................TTGAAAGACATATTGGCTGACCTGA....................................................................................2530.330.33--0.33--------------------------------------------------------------------------
...................................................................................................................................................GACATATTGGCTGACCTGA....................................................................................1930.330.33----------------------------------------------------------------------0.33------
...........................................................................................................................................................................................TTAAGACTTTCAGGCAG..............................................1730.330.33------------------------0.33----------------------------------------------------
..............................................................................................................................................TGAAAGACATATTGGCTGACCTGA....................................................................................2430.330.33-0.33---------------------------------------------------------------------------
............................................................................................................................................................................AGGAGCAGGCCAGAATTAAGAC........................................................2230.330.33--0.33--------------------------------------------------------------------------
................................................................................................................................................................................................................ATGGCAAGACGGTGG...........................1530.330.33-0.33---------------------------------------------------------------------------
.........................................................................................................................................GAATTTGAAAGACATATTGGCTGACCTGA....................................................................................2930.330.33--------0.33--------------------------------------------------------------------
....................................................................................................................................................ACATATTGGCTGACCTG.....................................................................................1730.330.33-----------------------------------------------------------------------0.33-----
.................................................................................................................................................AAGACATATTGGCTGACCTG.....................................................................................2030.330.33-----------------------------------------------------------0.33-----------------
.................................................................................................................................................AAGACATATTGGCTGACCTGAT...................................................................................2230.330.33---------------------------------------------------------------------0.33-------
............................................................................................................................................................................AGGAGCAGGCCAGAATTA............................................................1840.250.25-------------------------------------------------------------------------0.25---
...........................................................................................................................................................................AAGGAGCAGGCCAGAATTAA...........................................................2040.250.25-----------------------0.25-----------------------------------------------------
..........................................................................................................................................AATTTGAAAGACATATTGGCTGACC.......................................................................................2540.250.25-0.25---------------------------------------------------------------------------
............................................................................................................................................................................AGGAGCAGGCCAGAATTAAGA.........................................................2140.250.25---0.25-------------------------------------------------------------------------
...........................................................................................................................................................................AAGGAGCAGGCCAGAATTAAGA.........................................................2240.250.25--0.25--------------------------------------------------------------------------
................................................................................................................................................AAAGACATATTGGCTGACCT......................................................................................2040.250.25-----------------------0.25-----------------------------------------------------
..........................................................................................................................................AATTTGAAAGACATATTGGCTGACCT......................................................................................2640.250.25--------------------------0.25--------------------------------------------------
..................................................................................................................................................AGACATATTGGCTGACCT......................................................................................1840.250.25------------------------------------------------------------0.25----------------
...........................................................................................................................................................................AAGGAGCAGGCCAGAATTA............................................................1940.250.25-----------0.25-----------------------------------------------------------------
...........................................................................................................................................................GGCTGACCTGATACC................................................................................1550.200.20--0.20--------------------------------------------------------------------------
.................................................................................................................................................................................................................................GGCCAAATCACTGTGG.........1660.170.17---------------------------------------------------------------------------0.17-
...............................................................................................................................................................................AGCAGGCCAGAATTAAGA.........................................................1860.170.17----------------------------------------------------------------------------0.17
.........................................................................................................................................................................................AATTAAGACTTTCAGG.................................................1670.140.14-0.14---------------------------------------------------------------------------
..........................................................................................................................................AATTTGAAAGACATATT...............................................................................................1780.120.12---------------------------0.12-------------------------------------------------
.......................................................................................................................................................................................................................................ATCACTGTGGACATG....1580.120.12--------------0.12--------------------------------------------------------------

Antisense strand
CATTTGTGCAGAGTAGTTGACCAGACTTCCCTGGCAGATAAAGCCAGCTTCTAAAAAGCAAATTCTTGACACACCTACTTTGCAGGAAATCTAATAAACTTTTAGACCATTGCTTAGTCCTTCTACTTTTCTTTTTAGAATTTGAAAGACATATTGGCTGACCTGATACCTAAGGAGCAGGCCAGAATTAAGACTTTCAGGCAGCAACATGGCAAGACGGTGGTGGGCCAAATCACTGTGGACATGGTAA
....................................................................................................................(((.(((.....((((....))))...))).)))...((((((..(((........)))....)))))).................................................................
..................................................................................................................115.....................................................................187.............................................................
SizePerfect hitTotal NormPerfect NormSRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR553576(SRX182782)
source: Testis. (testes)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189784SRR040018(GSM532903)
G701N. (cervix)		GSM379267(GSM379267)
Small RNA from clear cell ovarian cancer tissue. (ovary)		TAX577580(Rovira)
total RNA. (breast)		SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189782SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM450603(GSM450603)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532890(GSM532890)
G576T. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM956925Ago2D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		GSM1105750AGO3(GSM1105750)
small RNA sequencing data. (ago3 hela)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040007(GSM532892)
G601T. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM956925Ago2PAZ(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (ago2 cell line)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR037938(GSM510476)
293Red. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)
........................................................................................................................AAAAAGAAAAGTAGAA.................................................................................................................. 1602.002.00-----------------2.00-----------------------------------------------------------
........................ACTTCCCTGGCAGATAACTT.............................................................................................................................................................................................................. 201.000.00--------------------------------------1.00--------------------------------------
...........................TCCCTGGCAGATAAATTGT............................................................................................................................................................................................................ 191.000.00--------------------------------1.00--------------------------------------------
....................................................................................................TTTAGACCATTGCTTTCCA................................................................................................................................... 191.000.00-----------------------------------------1.00-----------------------------------
..........................................................................................................................................................TGGCTGACCTGATACCTAACTC.......................................................................... 221.000.00-------------------------------1.00---------------------------------------------