ID: uc001skd.2_intron_11_0_chr12_56566489_r
GENE: (18)
chr12:56566439-56566770-


(2)
AGO2.ip 		(3)
B-CELL 		(2)
BRAIN 		(4)
BREAST 		(18)
CELL-LINE 		(3)
CERVIX 		(1)
HEART 		(9)
LIVER 		(1)
OTHER 		(8)
SKIN 		(3)
UTERUS 		(1)
XRN.ip

Sense strand
AAGAGCTGGATGACCTGGTGCCAGAGACGGCTAAGGGCAAGCCAGAGCTGGTAGGTGGGGTGCAGACCCTGCTGGGCTGCTCATTTTCCCCTTTATTGGGGGGCCCCTGCCCGGGAAGAAGAGACATGAGAGCAGAGGAACTACAGCAGTAAGGGAGGAAGTCCCACCCAGGGGTGTCCCTGGCTTTGGGAAAGAAGCTCCTTCTGTCTGTTTTTTCTCTCTGTCAGCCCCTGGCTCCCGGTGGTCACTTGTACTCACCTGTTTCTTTCCCTCCACAAATAGCAGACCTCTGCTTCCCAACAAATGCTCAACTTTCCTGACAAAGGCAAAGA
.................................................................................................................................((((........(((....)))..........(((((.((((((....))))))...))))).....))))....................................................................................................................................
................................................................................................................113.....................................................................................201.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		GSM956925PAZD5SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................GAAGAGACATGAGAGGGG.....................................................................................................................................................................................................18010.005.00--2.001.00-1.00---1.00-2.00-----1.00--------------------------1.001.00----------
....................................................................................................................AGAAGAGACATGAGAGGTG.....................................................................................................................................................................................................199.000.00-7.00-------------------1.00---------------------1.00------------
.....................................................................................................................GAAGAGACATGAGAGCTGTA...................................................................................................................................................................................................207.000.00----5.00----------1.00-------------------------1.00--------------
.....................................................................................................................GAAGAGACATGAGAGGTAA....................................................................................................................................................................................................1905.005.00-------3.00----2.00-------------------------------------------
.....................................................................................................................GAAGAGACATGAGAG........................................................................................................................................................................................................1505.005.00------3.00-------------------------1.00-------------------1.00---
.....................................................................................................................GAAGAGACATGAGAGGCG.....................................................................................................................................................................................................1804.005.00---------2.00--------------1.00-----------------------------1.00-
...................................................................................................................................................................................CTGGCTTTGGGAAAGCGT.......................................................................................................................................184.000.00--------3.00--------------------------1.00--------------------
.....................................................................................................................GAAGAGACATGAGAGGTGG....................................................................................................................................................................................................1903.005.00--1.001.00------------1.00---------------------------------------
.....................................................................................................................GAAGAGACATGAGAGGAGT....................................................................................................................................................................................................1903.005.00---2.00---------------------------1.00------------------------
.....................................................................................................................GAAGAGACATGAGAGACT.....................................................................................................................................................................................................1802.005.00--2.00-----------------------------------------------------
.....................................................................................................................GAAGAGACATGAGAGGGAG....................................................................................................................................................................................................1902.005.00-----2.00--------------------------------------------------
.......GGATGACCTGGTGCCAGAGACGGCTAAGGGCAA....................................................................................................................................................................................................................................................................................................3312.002.002.00-------------------------------------------------------
.....................................................................................................................GAAGAGACATGAGAGGCGT....................................................................................................................................................................................................1902.005.00----------------1.00--------1.00------------------------------
.....................................................................................................................GAAGAGACATGAGAGTATT....................................................................................................................................................................................................1902.005.00------------------2.00-------------------------------------
.....................................................................................................................GAAGAGACATGAGAGTGTA....................................................................................................................................................................................................1902.005.00---1.00-------------1.00--------------------------------------
............................................................................................................................................................................................................................................................ACTCACCTGTTTCTTTCCCTCCA.........................................................2311.001.00------------------------------1.00-------------------------
.....................................................................................................................GAAGAGACATGAGAGCTGA....................................................................................................................................................................................................191.000.00-----1.00--------------------------------------------------
....................................................................................................................................CAGAGGAACTACAGCAGTAAGGGAGG..............................................................................................................................................................................2611.001.00----------------------------------------------1.00---------
.....................................................................................................................GAAGAGACATGAGAGGCTT....................................................................................................................................................................................................1901.005.00----1.00---------------------------------------------------
.....................................................................................................................GAAGAGACATGAGAGCACGGT..................................................................................................................................................................................................211.000.00-------------------------------------------------1.00------
..............................................................................................................................................................................................................................................................TCACCTGTTTCTTTCTTCT...........................................................191.000.00--------------1.00-----------------------------------------
....GCTGGATGACCTGGTGCCAGAGACGGCTAAGGG.......................................................................................................................................................................................................................................................................................................3311.001.001.00-------------------------------------------------------
..............................CTAAGGGCAAGCCAGAGCT...........................................................................................................................................................................................................................................................................................1911.001.00-------------------------------------1.00------------------
.....CTGGATGACCTGGTGCCAGAGACG...............................................................................................................................................................................................................................................................................................................2411.001.001.00-------------------------------------------------------
.....................................................................................................................GAAGAGACATGAGAGGTGC....................................................................................................................................................................................................1901.005.00-------------1.00------------------------------------------
.......................................AGCCAGAGCTGGTAGAAA...................................................................................................................................................................................................................................................................................181.000.00--------------------------1.00-----------------------------
......................................................................................................................................GAGGAACTACAGCAGGACT...................................................................................................................................................................................191.000.00------------------------------------------1.00-------------
...........................................................................................................................................................................................................................................................................................................ACAAATGCTCAACTTTCCTG.............2011.001.00---------------------------------1.00----------------------
......................................................................................................................AAGAGACATGAGAGCTGT....................................................................................................................................................................................................181.000.00-------------1.00------------------------------------------
......................................................................................................................AAGAGACATGAGAGCGCC....................................................................................................................................................................................................181.000.00--------------------1.00-----------------------------------
........................................................................................................CCCTGCCCGGGAAGAAGAGACATGAG..........................................................................................................................................................................................................2611.001.00----------------------------------------1.00---------------
................................................................................................................................................................................................................................................................................................TCTGCTTCCCAACAAATGC.........................1911.001.00-----------------------1.00--------------------------------
........................AGACGGCTAAGGGCAAGCCAGAGCCGG.........................................................................................................................................................................................................................................................................................271.000.00--------------1.00-----------------------------------------
.....................................................................................................................GAAGAGACATGAGAGGAGG....................................................................................................................................................................................................1901.005.00--1.00-----------------------------------------------------
......................................................................................................................AAGAGACATGAGAGCAGAAGAC................................................................................................................................................................................................2211.001.00---1.00----------------------------------------------------
.....................................................................................................................GAAGAGACATGAGAGTG......................................................................................................................................................................................................1701.005.00---------------------------1.00----------------------------
......................................................................................................................AAGAGACATGAGAGCAGA....................................................................................................................................................................................................1811.001.00----------------------------------1.00---------------------
..GAGCTGGATGACCTGGTGCCAGAGACG...............................................................................................................................................................................................................................................................................................................2711.001.00---------------------------------------------------1.00----
.....................................................................................................................GAAGAGACATGAGAGGGGT....................................................................................................................................................................................................1901.005.00--1.00-----------------------------------------------------
............................................................................................................GCCCGGGAAGAAGAGACAT.............................................................................................................................................................................................................1911.001.00------------------------------------1.00-------------------
.......................................................................................................................................................................................................................................................................................TAGCAGACCTCTGCTATTG..................................191.000.00-------------------1.00------------------------------------
......................................................................................................................................GAGGAACTACAGCAGTAAGGGAGGA.............................................................................................................................................................................2511.001.00----------------------------1.00---------------------------
...................................................................................................................................................................................CTGGCTTTGGGAAAGCGTC......................................................................................................................................191.000.00----------1.00---------------------------------------------
...........................................................................................................................................................................................................................................................................................AGACCTCTGCTTCCCACGT..............................191.000.00---------------------------------------1.00----------------
.....................................................................................................................................................................................................................................................................................................................AACTTTCCTGACAAAGGC.....1811.001.00-----------------------------------------------------1.00--
.....................................................................................................................GAAGAGACATGAGAGGTTT....................................................................................................................................................................................................1901.005.00---------------1.00----------------------------------------
...................................................................................................................................................................................CTGGCTTTGGGAAAGCGTT......................................................................................................................................191.000.00----------1.00---------------------------------------------
.....................................................................................................................GAAGAGACATGAGAGCGG.....................................................................................................................................................................................................181.000.00-----1.00--------------------------------------------------
......................................................................................................................AAGAGACATGAGAGCACG....................................................................................................................................................................................................181.000.00-----1.00--------------------------------------------------
.................................AGGGCAAGCCAGAGCTGCAGA......................................................................................................................................................................................................................................................................................211.000.001.00-------------------------------------------------------
................................................................................TCATTTTCCCCTTTATT...........................................................................................................................................................................................................................................1740.250.25-------------------------------------------------------0.25

Antisense strand
AAGAGCTGGATGACCTGGTGCCAGAGACGGCTAAGGGCAAGCCAGAGCTGGTAGGTGGGGTGCAGACCCTGCTGGGCTGCTCATTTTCCCCTTTATTGGGGGGCCCCTGCCCGGGAAGAAGAGACATGAGAGCAGAGGAACTACAGCAGTAAGGGAGGAAGTCCCACCCAGGGGTGTCCCTGGCTTTGGGAAAGAAGCTCCTTCTGTCTGTTTTTTCTCTCTGTCAGCCCCTGGCTCCCGGTGGTCACTTGTACTCACCTGTTTCTTTCCCTCCACAAATAGCAGACCTCTGCTTCCCAACAAATGCTCAACTTTCCTGACAAAGGCAAAGA
.................................................................................................................................((((........(((....)))..........(((((.((((((....))))))...))))).....))))....................................................................................................................................
................................................................................................................113.....................................................................................201.................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR390724(GSM850203)
small rna immunoprecipitated. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR444047(SRX128895)
Sample 27_1cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189784SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR040040(GSM532925)
G612N. (cervix)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR189787SRR191606(GSM715716)
84genomic small RNA (size selected RNA from t. (breast)		SRR444055(SRX128903)
Sample 27_2cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		GSM956925PAZD5SRR189782SRR037937(GSM510475)
293cand2. (cell line)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		GSM956925F181A(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		SRR040038(GSM532923)
G531N. (cervix)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		GSM956925Paz8D5(GSM956925)
"cell line: HEK293 cell linepassages: 15-20ip. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.....................................................................................................................CTCTCATGTCTCTTC........................................................................................................................................................................................................ 1501.001.00--------------------------------------1.00-----------------
.........ATGACCTGGTGCCAGAGTAG............................................................................................................................................................................................................................................................................................................... 201.000.00-----------------------------1.00--------------------------
.........................................................................................................................................................................................................................................................TGGAGGGAAAGAAACAGGTGAGTACA......................................................... 2611.001.00-----------------------------------------------1.00--------
...........................................................................................................................................................................................................................CGGGAGCCAGGGGCTGACAGA............................................................................................ 2111.001.00----------------------1.00---------------------------------