ID: uc001sjm.2_intron_1_0_chr12_56500501_f
GENE: (2)
chr12:56500451-56500823+


(1)
AGO2.ip 		(8)
B-CELL 		(2)
BRAIN 		(13)
BREAST 		(42)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(4)
HEART 		(8)
HELA 		(1)
KIDNEY 		(4)
LIVER 		(2)
OTHER 		(1)
RRP40.ip 		(43)
SKIN 		(1)
TESTES 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TATGGAAGAAACAGGGAAAATCTTCAAGAAAGAAAAGGAAATGAAGAAAGGTAAAAAAAAAAAATCCCTCACTAATTTTCCGTTTGACCCTTATTTGGTCCTATATGTTTTTATTTTTTTCACTGTAATGACGCAGTCCCCACCCCAGCTCTGGCTGAGGTATTTGGAAATTTGGAATGGCAAGTGGGATACAAGCAGTTTCCTACCTAATCCAAACTGATGAAACTTAAGCAAGACCCTGAAAAAATCCTTCTACATTTCTGAAGGGCACTAGGGCTCCCGGGAGACAGCAAGGCAGTAGGCTGATGATTCTTTCTTTACAGGTATTGCTTTTCCCACCAGCATTTCGGTAAATAACTGTGTATGTCACTTC
........................................................................................................................................................................................................................(((...............(((((((......((((((.........))))))...))))).))..((((((...((.(((.....)))..))..))))))....)))..................................................
...............................................................................................................................................................................................................208................................................................................................................323................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577745(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189786SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189787SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTGAAA.................................................................................................................................321454.00454.00106.0083.00-34.00-20.0018.0014.0011.008.005.008.007.00--5.003.00--5.00-4.006.005.003.004.005.005.003.003.003.002.004.001.003.003.004.00--3.001.002.001.002.002.003.001.002.00-3.003.001.003.00-1.00-2.002.00-2.002.002.002.002.00-2.00-1.00-1.001.001.00--1.001.00--1.00--1.00-1.00-1.00-1.00----1.00----1.00-1.001.001.00------1.00--1.00----1.00-1.001.00-1.00---1.001.001.00-----------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTGAA..................................................................................................................................311113.00113.00--66.00-42.001.00---1.00-----------1.00-----------------------------1.00-------------------------------------------------------------1.00-------------------------
...................................................................................................................................................................................................................CCAAACTGATGAAACTTAAGCAAGACCCTGAAA.................................................................................................................................33134.0034.005.005.00---2.002.00----1.001.00--2.00---1.00-1.00---1.00--2.002.00-1.00---1.00----1.00-1.001.001.00------1.00------------------1.00-----------1.00--------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCA............................................................................................................................................21127.0027.00---25.00------------1.00----------------1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGA.........................................................................................................................................24111.0011.00---8.00--------------------------------------------------------------1.00--1.00----------------------------------------------------1.00----------------
.................................................................................................................................................................................................................................CTTAAGCAAGACCCTGAAA.................................................................................................................................19111.0011.006.003.00--------------1.00----------------1.00---------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................ACTTAAGCAAGACCCTGAAA.................................................................................................................................20110.0010.00---3.00--------------7.00------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................AGTAGGCTGATGATTCTTTCTTTACAG..................................................2718.008.00-------------8.00-----------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................GTAGGCTGATGATTCTTTCTTTACAG..................................................2617.007.00-----------------7.00-------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CCAAACTGATGAAACTTAAGCAAGACCCTGAA..................................................................................................................................3217.007.00--2.00-5.00--------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................................................AAACTGATGAAACTTAAGCAAGACCCTGAAA.................................................................................................................................3114.004.00----------3.001.00-------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................ATTTCTGAAGGGCACTAGGGCTCCCGGGAGACAGCAAGGCAGTAGGCTGATGATTCTTTCTTTACAG..................................................6714.004.00--------------------4.00----------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAG..........................................................................................................................................2314.004.00----1.00-----------2.00----------------1.00---------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACC.......................................................................................................................................2613.003.00--2.00---------------------------------------------------------------------------------------1.00------------------------------------------------
....................................................................................................................................................................................................................................................................................................AGGCAGTAGGCTGATGATTCTTT..........................................................2313.003.00-------------------------------------2.00--------------------------1.00--------------------------------------------------------------------------
......................TTCAAGAAAGAAAAGGAAATGAAGAAAG...................................................................................................................................................................................................................................................................................................................................2833.003.00--------------------------------------2.33--------------------------------0.67-------------------------------------------------------------------
............................................................................................................................................................................................................................TGAAACTTAAGCAAGACCCTGAAA.................................................................................................................................2412.002.00-------1.00----------------------------------------------------------1.00------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTGCAA.................................................................................................................................322.000.001.001.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................TTCTGAAGGGCACTAGGGCTCCCGGGAGACAGCAAGGCAGTAGGCTGATGATTCTTTCTTTACAG..................................................6512.002.00--------------------2.00----------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................TTCTGAAGGGCACTAGGGCTCC.............................................................................................2212.002.00--------------------------------------------------------------------------------1.00-----------------------1.00----------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTGACA.................................................................................................................................3212.001.00---------1.00--------------------1.00------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................CTGATGAAACTTAAGCAAGACCCTGAAA.................................................................................................................................2812.002.00----------2.00--------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................CGGGAGACAGCAAGGCAGTAGGC......................................................................2312.002.00-----------------------------------------------------2.00-------------------------------------------------------------------------------------
...................................AGGAAATGAAGAAAGGTA................................................................................................................................................................................................................................................................................................................................1842.002.00-------------------------------------0.25-----------------------------------1.00---0.50--------------------------------------------------0.25----------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTGCCA.................................................................................................................................322.000.00----------------------------------1.00------------1.00-------------------------------------------------------------------------------------------
..................................AAGGAAATGAAGAAAGGTA................................................................................................................................................................................................................................................................................................................................1921.501.50-------------------------------------------------------------------------0.50---0.50--------------------------------------------------0.50----------
................................................................................................................................................................................................................................................................................................AGCAAGGCAGTAGGCTGATGATTC.............................................................2411.001.00-------------------------------------------------------------------1.00-----------------------------------------------------------------------
...............................................................................................................TATTTTTTTCACTGTACA....................................................................................................................................................................................................................................................181.000.00------------------------------------------------1.00------------------------------------------------------------------------------------------
...............................GAAAAGGAAATGAAGTGCA...................................................................................................................................................................................................................................................................................................................................191.000.00----------------------------------------------------------------------------------------------1.00--------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGAC........................................................................................................................................2511.001.001.00------------------------------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................GCTCTGGCTGAGGTATTTGGAAATTTGGAATGGCA...............................................................................................................................................................................................3511.001.00-------------------------------------------------------1.00-----------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTCCCACCAGCATTTTTG.......................191.000.00------------------------------------------------1.00------------------------------------------------------------------------------------------
........................................................................................................ATGTTTTTATTTTTTTCCCC.........................................................................................................................................................................................................................................................201.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
............................................AGAAAGGTAAAAAAAAAAATGT...................................................................................................................................................................................................................................................................................................................221.000.00-----------------------------------------------------------------------------------------------------------1.00-------------------------------
.................................................................................................................................................................................................................................................................................................................................................ACCAGCATTTCGGTAAATAACTG.............2311.001.00------------------------------------------------------------------------------------1.00------------------------------------------------------
...................................................................................................................................................................................................................CCAAACTGATGAAACTTAAGCAAGACCCTGAAAAT...............................................................................................................................351.000.001.00------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTGA...................................................................................................................................3011.001.00------------------------1.00------------------------------------------------------------------------------------------------------------------
.....................................................................................................TATATGTTTTTATTTTTTTTTT..........................................................................................................................................................................................................................................................221.000.00------------------------------------------------------------------------1.00------------------------------------------------------------------
.....................................................................................................................................................................................................................AAACTGATGAAACTTAAGCAAGA.........................................................................................................................................2311.001.00---------------------------------------------------------------------------------------------------------1.00---------------------------------
............................................................................................................................................................................................................................................................................................................................................TTCCCACCAGCATTTCGGTAAATA.................2411.001.00----------------------------------------------------------------------------------------------------------------1.00--------------------------
..................................................................................................................................................................................................................................TTAAGCAAGACCCTGAAA.................................................................................................................................1811.001.00-----------------------------------------1.00-------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................................................................................................................CAGCATTTCGGTAAATAACT..............2011.001.00--------------------------------------------------------------------------------------------------------------1.00----------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACTG......................................................................................................................................2711.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
...........................................................................................................................................................................................................................................................................................................................................TTTCCCACCAGCATTTCGGTA.....................2111.001.00--------------------------------------------------------------------1.00----------------------------------------------------------------------
................................................................................................................................................................................................................................................................................AGGGCTCCCGGGAGACCT...................................................................................181.000.00----------------------------------------------------------------------------------------------------------1.00--------------------------------
........................................................................................................................................................................................................................................................................................................................................................TTTCGGTAAATAACTGTGTATGTCAC...2611.001.00-------------------------------------------------------------------------------------------------------1.00-----------------------------------
...............................................................................................................................................................................................................................................TGAAAAAATCCTTCTACAG...................................................................................................................191.000.00------------------------------------------------1.00------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................................................................................AGGCAGTAGGCTGATGATTCTTTCTT.......................................................2611.001.00----------------------------------------------------------------1.00--------------------------------------------------------------------------
.................................................................................................................................................................................................................................CTTAAGCAAGACCCTGAAAA................................................................................................................................2011.001.00------------------------------------------1.00------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................................................................................................................................................TCCCACCAGCATTTCGGTAA....................2011.001.00-----------------------------------------------------------------------------------------1.00-------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................GCTTTTCCCACCAGCATTTCGGT......................2311.001.00-------------------------------------------------------------------------------------------------------------------1.00-----------------------
...................................................................................................................................................................................................................CCAAACTGATGAAACTTAAGCAAGACCCTGA...................................................................................................................................3111.001.00-------------------------------1.00-----------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGA.............................................................................................................................................201.000.00----------------------------------------------------------------------------------------1.00--------------------------------------------------
.......................................................................................................................................................................AAATTTGGAATGGCAAGTGGGATACAAGCA................................................................................................................................................................................3011.001.00--------------------------------------1.00----------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................................................................................................................................................................TCGGTAAATAACTGTGTATGTC.....2211.001.00---------------------------------------------------------------------------------------------------------------------------1.00---------------
..................................AAGGAAATGAAGAAAGGTAAA..............................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------------1.00-----------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................AACTGATGAAACTTAAGCAAGACCCTGAAA.................................................................................................................................3011.001.00-------1.00-----------------------------------------------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................................................................................................................TTGCTTTTCCCACCAGCATTTCG........................2311.001.00----------------------------------------1.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................................................GGAATGGCAAGTGGGATAC.....................................................................................................................................................................................1911.001.00------------------------------------------------------------------------------------------------------1.00------------------------------------
.........................................................................................................................................................................................................................................................................GGGCACTAGGGCTCCCGGGAGACAGCAAGGCAG...........................................................................3311.001.00-----------------------------------------------------------------------------------------------1.00-------------------------------------------
...............................................................................................................................................................GTATTTGGAAATTTGGAATGGCAAGTGGG.........................................................................................................................................................................................2911.001.00------1.00------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................................CAAGGCAGTAGGCTGGATA................................................................191.000.00------------------------------------------------------------------------------------------------1.00------------------------------------------
.............................................................................................................................................................................................................................................................................................GACAGCAAGGCAGTAGGCTGAAA.................................................................231.000.00-------------------------------------------------------------------------------------------1.00-----------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTGCA..................................................................................................................................311.000.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................................TTTCGGTAAATAACTGTGTATGTCACTT.2811.001.00------------------------------------------------------1.00------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................AGGGCACTAGGGCTCCCGGGAGACAGCAAGGCAGT..........................................................................3511.001.00-------------------------------------------------------1.00-----------------------------------------------------------------------------------
...............................................................................................................................................................................................................................................................................................................................................CCACCAGCATTTCGGTAAATAACTGTGTATG.......3111.001.00----------------------------------------------1.00--------------------------------------------------------------------------------------------
.........................................................AAAAAAATCCCTCACTCG..........................................................................................................................................................................................................................................................................................................181.000.00----------------------------------------------------------1.00--------------------------------------------------------------------------------
................................................................................................................................................................................................................................................................................................................GATGATTCTTTCTTTACAG..................................................1911.001.00------------------------------------------------------------------------------------------------------------------------1.00------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTTAAGCAAGACCCTCAAA.................................................................................................................................321.000.00------------------------1.00------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CCAAACTGATGAAACTTAAGCAAGA.........................................................................................................................................2511.001.00--1.00----------------------------------------------------------------------------------------------------------------------------------------
..................................AAGGAAATGAAGAAAGGTACTGC............................................................................................................................................................................................................................................................................................................................2320.501.50---------------------------------------------------------------------------------------------------------------------------------0.50---------
.....................CTTCAAGAAAGAAAAGGAAATGAAGAAAGGT.................................................................................................................................................................................................................................................................................................................................3120.500.50--------------------------------------------------------------------------0.50----------------------------------------------------------------
...........................GAAAGAAAAGGAAATGAAGAAAGGT.................................................................................................................................................................................................................................................................................................................................2520.500.50----------------------------------------------------------------------------------------------------------------------------------0.50--------
..................................AAGGAAATGAAGAAAGGT.................................................................................................................................................................................................................................................................................................................................1840.500.50-----------------------------------------------------------------------------------------------------------------------------------0.25---0.25---
................................AAAAGGAAATGAAGAAAGG..................................................................................................................................................................................................................................................................................................................................1950.400.40-------------------------------------0.20---------------------------------------------------------------------------------------------0.20-------
...................................................................................TTGACCCTTATTTGG...................................................................................................................................................................................................................................................................................1530.330.33------------------------------------------------------------------------0.33------------------------------------------------------------------
.................................AAAGGAAATGAAGAAAGGT.................................................................................................................................................................................................................................................................................................................................1930.330.33------------------------------------------------------------------------------------------------------------------------------------0.33------
.ATGGAAGAAACAGGGAAAATCT..............................................................................................................................................................................................................................................................................................................................................................2240.250.25------------------------------------------------------------------------------------------------------------------------------------------0.25
.ATGGAAGAAACAGGGAAAAT................................................................................................................................................................................................................................................................................................................................................................2040.250.25--------------------------------------------------------------------------------------------------------------------------------------0.25----
..TGGAAGAAACAGGGAAAA.................................................................................................................................................................................................................................................................................................................................................................1840.250.25-------------------------------------------------------------------------------------------------------------------------------------0.25-----
..TGGAAGAAACAGGGAAAATCT..............................................................................................................................................................................................................................................................................................................................................................2140.250.25-----------------------------------------------------------------------------------------------------------------------------------------0.25-
.ATGGAAGAAACAGGGAAA..................................................................................................................................................................................................................................................................................................................................................................1840.250.25----------------------------------------------------------------------------------------------------------------------------------------0.25--
....................TCTTCAAGAAAGAAAAGGAAA............................................................................................................................................................................................................................................................................................................................................2140.250.25---------------------------------------------------------------------------0.25---------------------------------------------------------------
.....................CTTCAAGAAAGAAAAGG...............................................................................................................................................................................................................................................................................................................................................1790.220.22-----------------------0.11------------------------------0.11------------------------------------------------------------------------------------
.....................CTTCAAGAAAGAAAAGGAAATGAA........................................................................................................................................................................................................................................................................................................................................2450.200.20-----------------------0.20-------------------------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................CCAAACTGATGAAACT..................................................................................................................................................1650.200.20-0.20-----------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................CAAACTGATGAAACTT.................................................................................................................................................1670.140.140.14------------------------------------------------------------------------------------------------------------------------------------------
...................................AGGAAATGAAGAAAGGT.................................................................................................................................................................................................................................................................................................................................1780.120.12-----------------------------------------------------0.12-------------------------------------------------------------------------------------
.................................AAAGGAAATGAAGAAAGG..................................................................................................................................................................................................................................................................................................................................1880.120.12-----------------------------------------------------------------------------0.12-------------------------------------------------------------

Antisense strand
TATGGAAGAAACAGGGAAAATCTTCAAGAAAGAAAAGGAAATGAAGAAAGGTAAAAAAAAAAAATCCCTCACTAATTTTCCGTTTGACCCTTATTTGGTCCTATATGTTTTTATTTTTTTCACTGTAATGACGCAGTCCCCACCCCAGCTCTGGCTGAGGTATTTGGAAATTTGGAATGGCAAGTGGGATACAAGCAGTTTCCTACCTAATCCAAACTGATGAAACTTAAGCAAGACCCTGAAAAAATCCTTCTACATTTCTGAAGGGCACTAGGGCTCCCGGGAGACAGCAAGGCAGTAGGCTGATGATTCTTTCTTTACAGGTATTGCTTTTCCCACCAGCATTTCGGTAAATAACTGTGTATGTCACTTC
........................................................................................................................................................................................................................(((...............(((((((......((((((.........))))))...))))).))..((((((...((.(((.....)))..))..))))))....)))..................................................
...............................................................................................................................................................................................................208................................................................................................................323................................................
SizePerfect hitTotal NormPerfect NormDRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037931(GSM510469)
293GFP. (cell line)		SRR037938(GSM510476)
293Red. (cell line)		SRR037941(GSM510479)
293DroshaTN. (cell line)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		TAX577745(Rovira)
total RNA. (breast)		SRR029125(GSM416754)
U2OS. (cell line)		SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577579(Rovira)
total RNA. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		TAX577580(Rovira)
total RNA. (breast)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)		GSM416733(GSM416733)
HEK293. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR037939(GSM510477)
293cand5_rep1. (cell line)		SRR330867(SRX091705)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)		SRR038862(GSM458545)
MM472. (cell line)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553576(SRX182782)
source: Testis. (testes)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189784SRR029124(GSM416753)
HeLa. (hela)		SRR330873(SRX091711)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037934(GSM510472)
293cand4_rep3. (cell line)		TAX577744(Rovira)
total RNA. (breast)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR037933(GSM510471)
293cand4_rep2. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR037940(GSM510478)
293cand5_rep2. (cell line)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR189786SRR033715(GSM497060)
Mantle Cell Lymphoma (Mino122). (B cell)		DRR001482(DRX001036)
"Hela long total cell fraction, control". (hela)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)		SRR330883(SRX091721)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR553575(SRX182781)
source: Kidney. (Kidney)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR444058(SRX128906)
Sample 16cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		GSM359175(GSM359175)
hela_5_pct. (hela)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330910(SRX091748)
tissue: normal skindisease state: normal. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		GSM532874(GSM532874)
G699T. (cervix)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)		SRR330897(SRX091735)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)		GSM359205(GSM359205)
HepG2_nucl_up. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR324841(SRX087285)
"Total RNA, no rRNA depletion". (cell line)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		GSM359191(GSM359191)
HepG2_3pM_5. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR029131(GSM416760)
MCF7. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		GSM359203(GSM359203)
hepg2_untreated_b. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359189(GSM359189)
HepG2_2pm_3. (cell line)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR189787SRR191594(GSM715704)
70genomic small RNA (size selected RNA from t. (breast)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040018(GSM532903)
G701N. (cervix)		SRR040030(GSM532915)
G013N. (cervix)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
..................................................GTAAAAAAAAAAAATGGG................................................................................................................................................................................................................................................................................................................. 181.000.00----------------------------------------------------------1.00--------------------------------------------------------------------------------
..........................................GAAGAAAGGTAAAAAAAAAAACCTG.................................................................................................................................................................................................................................................................................................................. 251.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................CTACCTAATCCAAACTTGTA....................................................................................................................................................... 201.000.00-------------------------------------------------------------------------------1.00-----------------------------------------------------------
.......................................................AAAAAAAAATCCCTCAAGGA.......................................................................................................................................................................................................................................................................................................... 201.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................................GCTTTTCCCACCAGCTGA........................... 181.000.00----------------------------------------------1.00--------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................................AAAATCCTTCTACATTTCTGACA........................................................................................................... 231.000.00--------------------------------------------------------------------1.00----------------------------------------------------------------------
..............................................................................................................................................................................................................................................................................CTAGGGCTCCCGGGACTGG.................................................................................... 191.000.00------------------------------------------------------------------------------------------------------------------1.00------------------------
....................................................AAAAAAAAAAAATCCCTCAGGGG.......................................................................................................................................................................................................................................................................................................... 231.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
..................................AAGGAAATGAAGAAAGATGA............................................................................................................................................................................................................................................................................................................................... 201.000.00--------------------------------------------------------------------------------------------------1.00----------------------------------------
..............................................................................................................................................................................................................................................................................CTAGGGCTCCCGGGAAGC..................................................................................... 181.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
......................................AAATGAAGAAAGGTAAAAAAAAAATG..................................................................................................................................................................................................................................................................................................................... 261.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
......................................................AAAAAAAAAATCCCTCAAGGA.......................................................................................................................................................................................................................................................................................................... 211.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
..........................AGAAAGAAAAGGAAATGAG........................................................................................................................................................................................................................................................................................................................................ 191.000.00---------------------------------------------------------------------------------------------------------------------1.00---------------------
..................................................................................................................................................................................................................TCCAAACTGATGAAACCG................................................................................................................................................. 181.000.00-------------------------------------------------------------------------------------------------------------1.00-----------------------------
...........................................AAGAAAGGTAAAAAAAAAAATCGA.................................................................................................................................................................................................................................................................................................................. 241.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
...............GAAAATCTTCAAGAAAGAAGTAT............................................................................................................................................................................................................................................................................................................................................... 231.000.00---1.00---------------------------------------------------------------------------------------------------------------------------------------
..............................................AAAGGTAAAAAAAAAAAATTACG................................................................................................................................................................................................................................................................................................................ 231.000.00----------------------------------------------------------------------------------------------------------------------------1.00--------------
....................................................................................................................TTTTCACTGTAATGACGCACTTA.......................................................................................................................................................................................................................................... 231.000.00----------------------------------------------------------------------------1.00--------------------------------------------------------------
.....................................................AAAAAAAAAAATCCCTCGAC............................................................................................................................................................................................................................................................................................................ 201.000.00--------------1.00----------------------------------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................................................................................................AAGGGCACTAGGGCTCCCGGGTG....................................................................................... 231.000.00---------------------------------------------------------------------------------------------1.00---------------------------------------------
......................................................................................................................................................................................................................................................ATCCTTCTACATTTCCTG............................................................................................................. 181.000.00--------------------------------------------------------------------------------------1.00----------------------------------------------------
.........................CTTCATTTCCTTTTCTTTCTT....................................................................................................................................................................................................................................................................................................................................... 2140.250.25------------------------------------------------------------------------0.25------------------------------------------------------------------
...................................................................................................................................................TACCTCAGCCAGAGC................................................................................................................................................................................................................... 1550.200.20----------------------------------------------------------------------------0.20--------------------------------------------------------------