ID: uc001sga.2_intron_1_0_chr12_54791272_r.3p
GENE: (28)
chr12:54791222-54791471-


(2)
AGO2.ip 		(1)
BRAIN 		(6)
BREAST 		(21)
CELL-LINE 		(5)
CERVIX 		(1)
FIBROBLAST 		(5)
HEART 		(3)
HELA 		(7)
LIVER 		(2)
OTHER 		(14)
SKIN 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
AGCCAGGAATTTCCCAGGACCCTGAAGGGGCCATGATGGCAACAGATCTGGAACCTCAGCCTGGCCAGACACAGGCCCTCCCTGTTCCCCAGAGAAAGGGGAGCCCACTGGGCTCTGCAGATCCAATGACAAGTGGGGGCCAAGTATAGGGTAGAAAGAACTTCTGAGCTTTCATTGACTTCACCCAACTTGCTCCCCAGGTGGCCACAGCTGTGCAATGGACCAAGGCAGAAGGCAGCTATGGCGTCCC
.....................................................................................................................................(((((..(((((...(((..(((((..........)))))..((....))))).)))))..)))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029128(GSM416757)
H520. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189784SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
....................................................................................................................................................................................TCACCCAACTTGCTCCCCAGT.................................................21116.002.00--1.00---3.00-1.00--1.00--2.00-2.00-------------1.00------1.00---------1.001.00---1.00-------1.00----------
....................................................................................................................................................................................TCACCCAACTTGCTCCCCAGA.................................................21114.002.005.00------2.00----1.00------1.00------1.00----1.00---1.00------1.00------1.00---------------------
....................................................................................................................................GTGGGGGCCAAGTATAGGGTAGAATC............................................................................................268.000.00-8.00---------------------------------------------------------------------
......................................................................................................................................................................................................................GCAATGGACCAAGGCAGAAGG...............2113.003.00----3.00------------------------------------------------------------------
..........................................................................................................................................................................................................................TGGACCAAGGCAGAAGGCAGCTATGG......2612.002.00-------------2.00---------------------------------------------------------
....................................................................................................................................................................................TCACCCAACTTGCTCCCCAG..................................................2012.002.00---------------------------1.00---------------------------------1.00---------
.........................................................................................................................................................................................................................ATGGACCAAGGCAGAAGGCAGCTA.........2412.002.00---2.00-------------------------------------------------------------------
........................................................................................................................................................................................................................AATGGACCAAGGCAGAAGGCAGCT..........2412.002.00--1.00-----------------------------------------------1.00--------------------
........................................................................................................................................................................................................................AATGGACCAAGGCAGAAGG...............1912.002.00---1.00-----------------------------------------------1.00-------------------
....................................................................................................................................................................................TCACCCAACTTGCTCCCCAGTT................................................2212.002.00--1.00-------------------------------1.00------------------------------------
...................................................................................................................................AGTGGGGGCCAAGTATAGGGTAGA...............................................................................................2412.002.00-----------------------1.00---------1.00-------------------------------------
..........................................................................................................................................................................................................................TGGACCAAGGCAGAAGGCAGCTA.........2312.002.002.00----------------------------------------------------------------------
...............................................................................................................................................................................................................CAGCTGTGCAATGGACC..........................1712.002.00-----------------2.00-----------------------------------------------------
.........................................................................................................................................................................................................................ATGGACCAAGGCAGAAGGCAGCTATG.......2612.002.00-----1.00---------------------------------------1.00-------------------------
................................................................................................................................................................................................................................AAGGCAGAAGGCAGCTTG........181.000.00--------------------------------------------------------1.00--------------
.....................................................................................................................................TGGGGGCCAAGTATAGGGTAGAA..............................................................................................2311.001.00-------1.00---------------------------------------------------------------
......................................................................................................................................................................................................................GCAATGGACCAAGGCAGAAGGCA.............2311.001.001.00----------------------------------------------------------------------
.....................................................................................................................................................................................CACCCAACTTGCTCCCCAGTTA...............................................221.000.00---------------------1.00-------------------------------------------------
................................................................................................................CTCTGCAGATCCAATGAA........................................................................................................................181.000.00-----------------------------------------1.00-----------------------------
....................................................................................................................................................................................................................GTGCAATGGACCAAGGCAGA..................2011.001.00-----------------------------------------------------1.00-----------------
.........................................................AGCCTGGCCAGACACAGG...............................................................................................................................................................................1821.001.00-----1.00-----------------------------------------------------------------
.........................................ACAGATCTGGAACCTCAGCCGGC..........................................................................................................................................................................................231.000.00---------------1.00-------------------------------------------------------
...................................................................................................................................AGTGGGGGCCAAGTATAGGGT..................................................................................................2111.001.00---------1.00-------------------------------------------------------------
...................................................................................................................................AGTGGGGGCCAAGTATAGGGTAGAAT.............................................................................................261.000.00-------------------------------------------1.00---------------------------
...................................................................................................................................AGTGGGGGCCAAGTATAGGG...................................................................................................2011.001.00--------------------------------1.00--------------------------------------
........................................................................................................................................................................................................................AATGGACCAAGGCAGAAGGCAGATA.........251.000.00---------1.00-------------------------------------------------------------
....................................................................................................................................................................................TCACCCAACTTGCTCCCCAGCT................................................2211.002.00----------------------1.00------------------------------------------------
............................................................................CCTCCCTGTTCCCCAGAGCC..........................................................................................................................................................201.000.00--------------------------------------------------------------1.00--------
.............CCAGGACCCTGAAGGGGCCATA.......................................................................................................................................................................................................................221.000.001.00----------------------------------------------------------------------
...................................................................................................................................AGTGGGGGCCAAGTATAGGGTAGT...............................................................................................2411.001.00----------------------------------------1.00------------------------------
................................................................................................AGGGGAGCCCACTGGTTTT.......................................................................................................................................191.000.00-------------------------1.00---------------------------------------------
..............................................................................................................................................................................................................ACAGCTGTGCAATGGAC...........................1711.001.00--1.00--------------------------------------------------------------------
...................................................................................................................................................................................TTCACCCAACTTGCTCCCCAGAGGA..............................................251.000.001.00----------------------------------------------------------------------
.....................................................................................................................................................................................................................TGCAATGGACCAAGGCAGAAGGCAGCT..........2711.001.00-----------------------------1.00-----------------------------------------
.........................................................................................................................................................................................................................ATGGACCAAGGCAGAAGGCA.............2011.001.001.00----------------------------------------------------------------------
................................................................................................................................................TATAGGGTAGAAAGACGTC.......................................................................................191.000.00-------------------------------------------------------1.00---------------
......................................................................................................................................................................................................AGGTGGCCACAGCTGTGCAAT...............................2111.001.00-----1.00-----------------------------------------------------------------
...........................................................................................................................................................................................................GCCACAGCTGTGCAATGGACCAAGGCAGAAGG...............3211.001.00----------------------------------------------1.00------------------------
..............................................................................................................................................................................TTGACTTCACCCAACTTGCTCCCCAG..................................................2611.001.00--------1.00--------------------------------------------------------------
..............................................................................................................................................................................................................................CCAAGGCAGAAGGCAGCTATGGCGTCCC2811.001.00------------------1.00----------------------------------------------------
...................................................................................................................................AGTGGGGGCCAAGTATAGGGTAG................................................................................................2311.001.00----1.00------------------------------------------------------------------
.......................................................................................................................................................................................................................CAATGGACCAAGGCAGAAGG...............2011.001.00---1.00-------------------------------------------------------------------
.....................................................................................................................................................................................................................TGCAATGGACCAAGGCAGAAGGCAGCTA.........2811.001.00------------------------1.00----------------------------------------------
......................................................................................................................................................................................................AGGTGGCCACAGCTGTGCAATGGACA..........................261.000.00---------------1.00-------------------------------------------------------
....................................................................................................................................................................................TCACCCAACTTGCTCCCCAGTAGT..............................................2411.002.00---------------------------------------------------------------1.00-------
.........................................................................................................................................................................................................................ATGGACCAAGGCAGAAGGCAGCT..........2311.001.00--------------------1.00--------------------------------------------------
....................................................................................................................................................................................TCACCCAACTTGCTCCCCCCT.................................................211.000.00-----------1.00-----------------------------------------------------------
....................................................................................................................................................................................TCACCCAACTTGCTCCCCAGTAA...............................................2311.002.001.00----------------------------------------------------------------------
............................................................................................AGAAAGGGGAGCCCACTG............................................................................................................................................1820.500.50------------------------------------------------------------------0.50----
................................ATGATGGCAACAGATCTGGAA.....................................................................................................................................................................................................2120.500.50-----------------------------------------------------------------0.50-----
.........................................ACAGATCTGGAACCTCAGCCTGGC.........................................................................................................................................................................................2420.500.50-------------------------------------------------------------------0.50---
......................................GCAACAGATCTGGAACCTCAG...............................................................................................................................................................................................2120.500.50----------------------------------------------------------------0.50------
..............................................................................................................................................................................................................................CCAAGGCAGAAGGCAGC...........1720.500.50------------------0.50----------------------------------------------------
..........................................................................................AGAGAAAGGGGAGCCCAC..............................................................................................................................................1820.500.500.50----------------------------------------------------------------------
....................................TGGCAACAGATCTGGAACCTC.................................................................................................................................................................................................2120.500.50--------------------------------------------------------------------0.50--
.............................................................................................................................................................................................................CACAGCTGTGCAATGGA............................1720.500.50---------------------------------------------------------------------0.50-
................................ATGATGGCAACAGATCTGGAACCTC.................................................................................................................................................................................................2520.500.500.50----------------------------------------------------------------------
...................................ATGGCAACAGATCTGGAA.....................................................................................................................................................................................................1820.500.50-----0.50-----------------------------------------------------------------
.......................................................................................................................................................................................................................................AAGGCAGCTATGGCG....1520.500.50-------------------0.50---------------------------------------------------
.........................................ACAGATCTGGAACCTCAGCCTGG..........................................................................................................................................................................................2320.500.50--0.50--------------------------------------------------------------------
...................................ATGGCAACAGATCTGGAACC...................................................................................................................................................................................................2020.500.50--------------------0.50--------------------------------------------------

Antisense strand
AGCCAGGAATTTCCCAGGACCCTGAAGGGGCCATGATGGCAACAGATCTGGAACCTCAGCCTGGCCAGACACAGGCCCTCCCTGTTCCCCAGAGAAAGGGGAGCCCACTGGGCTCTGCAGATCCAATGACAAGTGGGGGCCAAGTATAGGGTAGAAAGAACTTCTGAGCTTTCATTGACTTCACCCAACTTGCTCCCCAGGTGGCCACAGCTGTGCAATGGACCAAGGCAGAAGGCAGCTATGGCGTCCC
.....................................................................................................................................(((((..(((((...(((..(((((..........)))))..((....))))).)))))..)))))...................................................
..............................................................................................................................127......................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR314796(SRX084354)
"Total RNA, fractionated (15-30nt)". (cell line)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR029128(GSM416757)
H520. (cell line)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR040010(GSM532895)
G529N. (cervix)		SRR189782SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR189786SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR191410(GSM715520)
20genomic small RNA (size selected RNA from t. (breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		DRR000561(DRX000319)
Isolation of RNA following immunoprecipitatio. (ago2 cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040029(GSM532914)
G026T. (cervix)		SRR191590(GSM715700)
48genomic small RNA (size selected RNA from t. (breast)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR189787SRR040011(GSM532896)
G529T. (cervix)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR038858(GSM458541)
MEL202. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		SRR038854(GSM458537)
MM653. (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR029130(GSM416759)
DLD2. (cell line)		SRR191609(GSM715719)
194genomic small RNA (size selected RNA from . (breast)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR363673(GSM830250)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444044(SRX128892)
Sample 5cDNABarcode: AF-PP-340: ACG CTC TTC C. (skin)		SRR029125(GSM416754)
U2OS. (cell line)		SRR189784SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR040008(GSM532893)
G727N. (cervix)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577743(Rovira)
total RNA. (breast)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
................................................................CCAGACACAGGCCCTCCCTGTTA................................................................................................................................................................... 235.000.00----------1.00-------------------------1.00--1.00------------------1.001.00-----------
.................................................................CAGACACAGGCCCTCCCAATA.................................................................................................................................................................... 211.000.00----------------------------1.00------------------------------------------
..........................................CAGATCTGGAACCTCAACAG............................................................................................................................................................................................ 201.000.00------------1.00----------------------------------------------------------
...............................................................................................................................................................................................................................CAAGGCAGAAGGCAGCCCG........ 191.000.00---------------------------------------------------------1.00-------------
.......................................................................................................................................................................................................GGTGGCCACAGCTGTGCAAGGGG............................ 231.000.00--------------------------------------------1.00--------------------------
.......................................................................CAGGCCCTCCCTGTTCG.................................................................................................................................................................. 171.000.00------------------------------------------------------1.00----------------
........................................................CAGCCTGGCCAGACAGTGT............................................................................................................................................................................... 191.000.00----------1.00------------------------------------------------------------
................................................................CCAGACACAGGCCCTCCCTGTA.................................................................................................................................................................... 221.000.00--------------------------------------1.00--------------------------------
............................................CTGAGGTTCCAGATC............................................................................................................................................................................................... 1590.220.22-0.22---------------------------------------------------------------------
...................................................................CAGGGAGGGCCTGTGTC...................................................................................................................................................................... 1750.200.20----------------------------------------------------------------------0.20