ID: uc001sfh.3_intron_3_0_chr12_54651477_r.5p
GENE: (1)
chr12:54652854-54653103-


(1)
B-CELL 		(1)
BRAIN 		(9)
BREAST 		(11)
CELL-LINE 		(4)
CERVIX 		(1)
FIBROBLAST 		(1)
HELA 		(1)
OTHER 		(5)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
TTTAACCCCAGCGCTCTGACCTAAACTGCTCAGCTCCCGGAAATTCCAAGGTGAGTGGTGGTGGGGGTGGGGTACTCTCCCTGGAATATGACATTTCCTGTCTCTGGTGAGGTTGGAGGCTGTTTTATTTTAAATAAAGCACATAAGATATTTTCTTGAAGCTTAGGACTCTTCTAAATTCATGGAAAAATTATTTTAACCCCCCCGCACCTACATTTTGCTACTACTTCCTCTTCCAAATAGAGTATTT
...........................................................((.(((((((...)))))))))...((((.(((((((((..((((....))))..))))).)))).)))).........................................................................................................................
..................................................51............................................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040039(GSM532924)
G531T. (cervix)
......................................................GTGGTGGTGGGGGTGGG...................................................................................................................................................................................17014.0014.00-5.00-5.00-3.001.00-------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTTTAGTT.........................................................................................................................223.000.001.00---------1.001.00--------------------------
...........................................................................................................TGAGGTTGGAGGCTGTATAG...........................................................................................................................203.000.00--2.00----------------------------1.00------
...........................................................................................................TGAGGTTGGAGGCTGTATA............................................................................................................................192.000.00------------------1.00----1.00--------------
...........................................................................................................TGAGGTTGGAGGCTGTTTTGTT.........................................................................................................................2212.001.001.00---------------------------1.00---------
.......................................................TGGTGGTGGGGGTGGGG..................................................................................................................................................................................1702.002.00-2.00------------------------------------
....ACCCCAGCGCTCTGACC.....................................................................................................................................................................................................................................1712.002.00-------1.00-----1.00------------------------
...........................................................................................................TGAGGTTGGAGGCTGTTTGGT..........................................................................................................................212.000.001.00----------------------------1.00--------
...........................................................................................................TGAGGTTGGAGGCTGTTTAGCT.........................................................................................................................222.000.001.00----------1.00--------------------------
......................................................GTGGTGGTGGGGGTGGGG..................................................................................................................................................................................1802.002.00-1.00----1.00-------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTTTCGTT.........................................................................................................................221.000.001.00-------------------------------------
.........................................................................ACTCTCCCTGGAATATGA...............................................................................................................................................................1811.001.00-------1.00------------------------------
.......................................................................................................CTGGTGAGGTTGGAGGCTGTT..............................................................................................................................2111.001.00---------------------1.00----------------
..........................................................................................................GTGAGGTTGGAGGCTGTTTTA...........................................................................................................................2111.001.00----1.00---------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTACAC...........................................................................................................................201.000.00--------------------------------1.00-----
.....CCCCAGCGCTCTGACC.....................................................................................................................................................................................................................................1621.001.00-------0.50--------------------------0.50---
...........................................................................................................TGAGGTTGGAGGCTGTCT.............................................................................................................................181.000.00--1.00-----------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTGTA............................................................................................................................191.000.00--------1.00-----------------------------
..................ACCTAAACTGCTCAGCTCCCA...................................................................................................................................................................................................................211.000.00----------------------1.00---------------
.......................................................TGGTGGTGGGGGTGGGGAAA...............................................................................................................................................................................2001.002.00---------1.00----------------------------
......................................................GTGGTGGTGGGGGTGGCGA.................................................................................................................................................................................191.000.00------------------------------1.00-------
...........................................................................................................TGAGGTTGGAGGCTGTCTAC...........................................................................................................................201.000.00--1.00-----------------------------------
......................................................................................................TCTGGTGAGGTTGGAGGCTG................................................................................................................................2021.001.00----1.00---------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTACAG...........................................................................................................................201.000.00--1.00-----------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTTTTGC..........................................................................................................................2111.001.001.00-------------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTCTAA...........................................................................................................................201.000.00--------1.00-----------------------------
...........................................................................................................TGAGGTTGGAGGCTGTCTAG...........................................................................................................................201.000.00--1.00-----------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTAT.............................................................................................................................181.000.00----------1.00---------------------------
............................CTCAGCTCCCGGAAAAC.............................................................................................................................................................................................................171.000.00-------------------1.00------------------
...........................................................................................................TGAGGTTGGAGGCTGTA..............................................................................................................................171.000.001.00-------------------------------------
......................................................GTGGTGGTGGGGGTGGGCGG................................................................................................................................................................................2001.0014.00-----------------1.00--------------------
...........................................................................................................TGAGGTTGGAGGCTGTGGGG...........................................................................................................................201.000.00--------------------1.00-----------------
........................................................................................................................................................................................................CCCCCCGCACCTACACCA................................181.000.00---------1.00----------------------------
..........................................................TGGTGGGGGTGGGGT.................................................................................................................................................................................1501.001.00------1.00-------------------------------
......................................................GTGGTGGTGGGGGTGGTTGG................................................................................................................................................................................201.000.00-------------------------1.00------------
...........................................................................................................TGAGGTTGGAGGCTGTTTGGTT.........................................................................................................................221.000.00----------------1.00---------------------
...........................................................................................................TGAGGTTGGAGGCTGTTTATTT.........................................................................................................................221.000.001.00-------------------------------------
...........................................................................................................TGAGGTTGGAGGCTGTTTT............................................................................................................................1911.001.00--1.00-----------------------------------
......................................................GTGGTGGTGGGGGTGGGCGGG...............................................................................................................................................................................2101.0014.00--------------1.00-----------------------
...........................................................................................................TGAGGTTGGAGGCTGTAGAG...........................................................................................................................201.000.00--1.00-----------------------------------
............................................................................................................GAGGTTGGAGGCTGTTTGGTT.........................................................................................................................211.000.00------------------------1.00-------------
...........................................................................................................TGAGGTTGGAGGCTGTGAC............................................................................................................................191.000.00---------------------------------1.00----
...................................................................................................GTCTCTGGTGAGGTTGG......................................................................................................................................1720.500.50-----------------------------------0.50--
.....................................................AGTGGTGGTGGGGGTGGG...................................................................................................................................................................................1890.220.22-------------------------------------0.22

Antisense strand
TTTAACCCCAGCGCTCTGACCTAAACTGCTCAGCTCCCGGAAATTCCAAGGTGAGTGGTGGTGGGGGTGGGGTACTCTCCCTGGAATATGACATTTCCTGTCTCTGGTGAGGTTGGAGGCTGTTTTATTTTAAATAAAGCACATAAGATATTTTCTTGAAGCTTAGGACTCTTCTAAATTCATGGAAAAATTATTTTAACCCCCCCGCACCTACATTTTGCTACTACTTCCTCTTCCAAATAGAGTATTT
...........................................................((.(((((((...)))))))))...((((.(((((((((..((((....))))..))))).)))).)))).........................................................................................................................
..................................................51............................................................................129.......................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR189787DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR189782DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		SRR037936(GSM510474)
293cand1. (cell line)		TAX577740(Rovira)
total RNA. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR040034(GSM532919)
G001N. (cervix)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR189784TAX577580(Rovira)
total RNA. (breast)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		TAX577588(Rovira)
total RNA. (breast)		SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)		TAX577746(Rovira)
total RNA. (breast)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR029128(GSM416757)
H520. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR040025(GSM532910)
G613T. (cervix)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		TAX577738(Rovira)
total RNA. (breast)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577743(Rovira)
total RNA. (breast)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR191602(GSM715712)
60genomic small RNA (size selected RNA from t. (breast)		SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040039(GSM532924)
G531T. (cervix)
.....TAGGTCAGAGCGCTGGGG................................................................................................................................................................................................................................... 1811.001.00----1.00---------------------------------
................................................................................................CCTGTCTCTGGTGAGGGG........................................................................................................................................ 181.000.00---------------------------1.00----------
............................TTGGAATTTCCGGGAGCTGAG......................................................................................................................................................................................................... 2111.001.00--------------------------1.00-----------
........................................................GGTGGTGGGGGTGGGGTGGGA............................................................................................................................................................................. 211.000.00------------1.00-------------------------
........................................................GGTGGTGGGGGTGGGGTACTG............................................................................................................................................................................. 211.000.00---------------1.00----------------------
.....TTTAGGTCAGAGCGCTGGGG................................................................................................................................................................................................................................. 2011.001.00----1.00---------------------------------
....................................................CCACCCCCACCACCACTC.................................................................................................................................................................................... 1840.250.25------------------------------------0.25-