ID: uc001scr.3_intron_14_0_chr12_53714477_r.5p
GENE: (1)
chr12:53714927-53715176-


(14)
B-CELL 		(3)
BRAIN 		(14)
BREAST 		(23)
CELL-LINE 		(4)
CERVIX 		(5)
HEART 		(2)
HELA 		(3)
LIVER 		(4)
OTHER 		(1)
RRP40.ip 		(23)
SKIN 		(3)
UTERUS 		(2)
XRN.ip

Sense strand
TGGTGACGGGCAGTAGCTATGAGAGCCCGCCCCCCGACTTCCGGGGCCAGGTGGCCAGGGCGAGGAGGGAGGGGACCTACAGGCATGGGGGCGGAGTCGGGGACTACTGGGGAAAGGAGGCAGTGTGACAGGGGCAGGGTCACAGAGTCTGGCGGAGTGGAAACAGCTTGGCCCCGGCAGGAGGCTAGAAGGGCTGGAATCTGTTTTAGGACTGGGATTGGAGTATAACGGGGGAACGGTTAAGGAGCTG
...............................................................................................................................................(((.((..((....((....))..((((((((....)).))))))....))..)).)))................................................
...............................................................................................................................................144............................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029127(GSM416756)
A549. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040029(GSM532914)
G026T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
.........................................................................................................................................................................................TAGAAGGGCTGGAATCTG...............................................18134.0034.003.0031.00-------------------------------------------------------------------------------------------------
.......................................................................................................................................................................................GCTAGAAGGGCTGGAATCTG...............................................20111.0011.009.00-2.00------------------------------------------------------------------------------------------------
....................................................................................................................................................CTGGCGGAGTGGAAACAGCT..................................................................................20111.0011.00--2.00-----1.00-------------1.00---2.00-1.00-------1.00---1.00---1.00---------------------------------------1.00--------------
........................................................................................................................................................................................CTAGAAGGGCTGGAATCTG...............................................19110.0010.008.00-2.00------------------------------------------------------------------------------------------------
.............................................................................................................................................ACAGAGTCTGGCGGAGTG...........................................................................................1818.008.00---2.00------1.00-----2.00-----------1.00---1.00------------------------------------1.00-----------------------------
.................................................................................................................................................................................................CTGGAATCTGTTTTAGGAC......................................1918.008.00----8.00----------------------------------------------------------------------------------------------
...............................................................................................................................................................................................................AGGACTGGGATTGGAGTA.........................1816.006.00--2.00---2.00------1.00-------------------------------------------------------------------------1.00-----------
............................................................................................................................................................GTGGAAACAGCTTGGCCC............................................................................1825.505.50-5.00--------------------------------------------------------------------------------------------0.50----
.............................................................................................................................................ACAGAGTCTGGCGGAGTGGA.........................................................................................2015.005.00--4.00-------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................CTGGCGGAGTGGAAACAG....................................................................................1825.005.00---0.50----------1.00--0.50--------------------1.00-----------------------------------------------------0.500.50---0.500.50
..................................................................................................................................................GTCTGGCGGAGTGGAAACAG....................................................................................2015.005.004.00-----------------------------1.00--------------------------------------------------------------------
.............................................................................................................................................................TGGAAACAGCTTGGCCCC...........................................................................1814.004.00---------4.00-----------------------------------------------------------------------------------------
...................................................................................................................................................TCTGGCGGAGTGGAAACAG....................................................................................1914.004.00--------1.00----------------------------1.00---------1.00-----------1.00---------------------------------------
.......................................................................................................................................................GCGGAGTGGAAACAGCTTGGC..............................................................................2114.004.002.00----1.00----------------------------------------------------1.00----------------------------------------
.............................................................................................................................................................................................................TTAGGACTGGGATTGGAG...........................1813.003.00--3.00------------------------------------------------------------------------------------------------
.......................................................CAGGGCGAGGAGGGAGGGG................................................................................................................................................................................1913.003.00---------------1.00--------------------------------1.00---------------------------1.00----------------------
....................................................................................................................................................................AGCTTGGCCCCGGCAGGAGG..................................................................2013.003.003.00--------------------------------------------------------------------------------------------------
.....................................................................................................................................................................................AGGCTAGAAGGGCTGGAATCTG...............................................2213.003.00--3.00------------------------------------------------------------------------------------------------
...............................................................................................................................................AGAGTCTGGCGGAGTGGAAAC......................................................................................2112.002.00-----2.00---------------------------------------------------------------------------------------------
..........................................................................................................................................................................................................GTTTTAGGACTGGGATTGGAG...........................2112.002.00--------1.00--1.00---------------------------------------------------------------------------------------
......................................................................................................................................................GGCGGAGTGGAAACAGCTTG................................................................................2012.002.00------1.00----------------------------------1.00---------------------------------------------------------
....................................................................................................................................................CTGGCGGAGTGGAAACAGCTTGGC..............................................................................2412.002.001.00------------------------1.00-------------------------------------------------------------------------
....................................................................................ATGGGGGCGGAGTCGGGGATTAA...............................................................................................................................................232.000.00-----------------------2.00---------------------------------------------------------------------------
.............................................................................................................................................................................................................TTAGGACTGGGATTGGAGTA.........................2012.002.00-----2.00---------------------------------------------------------------------------------------------
.GGTGACGGGCAGTAGCTATGAGAGC................................................................................................................................................................................................................................2512.002.002.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................TCTGGCGGAGTGGAAACAGC...................................................................................2012.002.00-----------------1.00-------------------------------------------------------------------------1.00-------
.....................................................................................................................................................TGGCGGAGTGGAAACAGCTT.................................................................................2012.002.00-----1.00----------------------------------------------------------1.00----------------------------------
.............................................................................................................................................ACAGAGTCTGGCGGAGTGG..........................................................................................1912.002.00--------1.00--------------------------------------------------------------------1.00---------------------
.......................................................................................................................................................GCGGAGTGGAAACAGCTTGG...............................................................................2012.002.00--1.00-----------1.00------------------------------------------------------------------------------------
............................................................................................................................................................GTGGAAACAGCTTGGCCCCGGCAGGAGACT................................................................302.000.00------------2.00--------------------------------------------------------------------------------------
................................................................................................................................................................................................GCTGGAATCTGTTTTAGGACTGGGATTGGAG...........................3112.002.00------------------------2.00--------------------------------------------------------------------------
...........................................................................................................................................................................................................TTTTAGGACTGGGATTGG.............................1812.002.00-2.00-------------------------------------------------------------------------------------------------
..........................................................................................................................................................................................AGAAGGGCTGGAATCTG...............................................1712.002.001.00----------------------------1.00---------------------------------------------------------------------
.......................................................................................................................................................GCGGAGTGGAAACAGCTTGGCCC............................................................................2311.001.00---------------------------------------------------------------------------1.00-----------------------
..........................................................................................................................................................................................AGAAGGGCTGGAATCTGTTTTAGGACTGGG..................................3011.001.00-------1.00-------------------------------------------------------------------------------------------
....................................................................................................................................................................................GAGGCTAGAAGGGCTGGGCCT.................................................211.000.00---------------------------------1.00-----------------------------------------------------------------
.............................................................................................................................................ACAGAGTCTGGCGGAGTGGAAA.......................................................................................2211.001.00---1.00-----------------------------------------------------------------------------------------------
.................................................................................................................................................AGTCTGGCGGAGTGGAAACA.....................................................................................2011.001.00----------------------1.00----------------------------------------------------------------------------
.......................................................................................................................................................................................GCTAGAAGGGCTGGAATCTC...............................................201.000.001.00--------------------------------------------------------------------------------------------------
...............................................................................................................................................AGAGTCTGGCGGAGTGGAA........................................................................................1911.001.00---1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................GAGTCTGGCGGAGTGGCA........................................................................................181.000.00------------------1.00--------------------------------------------------------------------------------
..........................................................................................................................................................................................................GTTTTAGGACTGGGATTGGAGTATA.......................2511.001.00-----------------------------------------------------------------------------------1.00---------------
..........................................................................................................................................GTCACAGAGTCTGGCGGAG.............................................................................................1911.001.00---1.00-----------------------------------------------------------------------------------------------
.......................................................................................................................................AGGGTCACAGAGTCTGGCG................................................................................................1911.001.00-----------1.00---------------------------------------------------------------------------------------
...................................................................................................................................GGGCAGGGTCACAGAAA......................................................................................................171.000.00-------------------------------------------1.00-------------------------------------------------------
......................................................................................................................................CAGGGTCACAGAGTCTGGCGGAGTGGA.........................................................................................2711.001.00-------------------------------------------------------------1.00-------------------------------------
.......................................................................................................................................AGGGTCACAGAGTCTGGCGGAGTGGA.........................................................................................2611.001.00---------------------1.00-----------------------------------------------------------------------------
..................................................................................................................................................GTCTGGCGGAGTGGAAACAGCTTGA...............................................................................2511.001.00---------------1.00-----------------------------------------------------------------------------------
................................................................................................................................................................................................GCTGGAATCTGTTTTAGGA.......................................1911.001.00--1.00------------------------------------------------------------------------------------------------
................................................................................................................AAAGGAGGCAGTGTGACAGGGGCA..................................................................................................................2411.001.00------------------------------1.00--------------------------------------------------------------------
............................................................................................................................................................GTGGAAACAGCTTGGCCCC...........................................................................1911.001.00--------------------------------------------------------------------------------------1.00------------
..............................................................................................................................................CAGAGTCTGGCGGAGTGG..........................................................................................1811.001.00---------------------------------------------1.00-----------------------------------------------------
..................................................................................................................................................GTCTGGCGGAGTGGAAACAGCTTG................................................................................2411.001.00---------------------------------------------------1.00-----------------------------------------------
............................................................................................................................................................GTGGAAACAGCTTGGCCCCGGCAGGAGA..................................................................281.000.00-------------------------------------------------------------------------------1.00-------------------
......................................................................................................................................................................................................................................GGGGAACGGTTAAGGCG...171.000.00-----------------------------1.00---------------------------------------------------------------------
......................................................................................................................................................................................................ATCTGTTTTAGGACTGGGAT................................2011.001.001.00--------------------------------------------------------------------------------------------------
...............................................................................................................................................AGAGTCTGGCGGAGTGGA.........................................................................................1811.001.00--------------------------------------------------------------------------1.00------------------------
...............................................................................................................................................AGAGTCTGGCGGAGTGGAAA.......................................................................................2011.001.00---1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................TGTTTTAGGACTGGGATTGG.............................2011.001.00--1.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................................................................ATTGGAGTATAACGGGGGAACGGTT.........2511.001.00---------------------------------------------------------------1.00-----------------------------------
.....................................................................................................................................................TGGCGGAGTGGAAACAGCT..................................................................................1911.001.00--------------------1.00------------------------------------------------------------------------------
............................................................................................................................................CACAGAGTCTGGCGGAGTGGAAACAG....................................................................................2611.001.001.00--------------------------------------------------------------------------------------------------
..................................................................................................................................................GTCTGGCGGAGTGGAAACAGC...................................................................................2111.001.00------------------------------------------------------1.00--------------------------------------------
......................................................................................................................................................GGCGGAGTGGAAACAGCT..................................................................................1811.001.00--------------------------------------------------------------------1.00------------------------------
.............................................................................................................................................ACAGAGTCTGGCGGAGTGGAAAC......................................................................................2311.001.00--------------1.00------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................GGGGAACGGTTAAGGAG...1711.001.00-------1.00-------------------------------------------------------------------------------------------
................................................................................................................................................GAGTCTGGCGGAGTGGAAACAGCT..................................................................................2411.001.00-------1.00-------------------------------------------------------------------------------------------
........................................................................................................................................................................................................CTGTTTTAGGACTGGGATTGG.............................2111.001.00-----------------------------------------------------------------1.00---------------------------------
................................................................................................................................................GAGTCTGGCGGAGTGGAAACAGCTTG................................................................................2611.001.00-------------1.00-------------------------------------------------------------------------------------
..................................................................................................................................................................ACAGCTTGGCCCCGGCAGGA....................................................................2011.001.00----------------------------------1.00----------------------------------------------------------------
..................................................................................................................AGGAGGCAGTGTGACAGGGGCAGGGTCAAA..........................................................................................................301.000.00---------------------------------------------------------------------------------1.00-----------------
............................................................................................................................................CACAGAGTCTGGCGGAGCG...........................................................................................191.000.00-----------1.00---------------------------------------------------------------------------------------
......................................................................................................................................................................................................ATCTGTTTTAGGACTGGGATTGGAG...........................2511.001.001.00--------------------------------------------------------------------------------------------------
.............................................................................................................................................................................................................TTAGGACTGGGATTGGAGTATAA......................2311.001.00----------------------------------------------1.00----------------------------------------------------
.GGTGACGGGCAGTAGCTATGAGAGCC...............................................................................................................................................................................................................................2611.001.00----------------------------------1.00----------------------------------------------------------------
................................................................................................................................CAGGGGCAGGGTCACAGAGTCTGG..................................................................................................2411.001.00-------------------------1.00-------------------------------------------------------------------------
...............................................................................................................................................................................................................AGGACTGGGATTGGAGTATAAC.....................2211.001.00----------1.00----------------------------------------------------------------------------------------
.................................................................................................................................AGGGGCAGGGTCACAGAGT......................................................................................................1911.001.00---1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................AGAGTCTGGCGGAGTGGTTTT......................................................................................211.000.00------------------------------------1.00--------------------------------------------------------------
.......................................................................................................................................................GCGGAGTGGAAACAGCTTGGCCCCG..........................................................................2511.001.00------------------------------------------1.00--------------------------------------------------------
..............................................................................................................................................CAGAGTCTGGCGGAGTGGT.........................................................................................1911.001.00------------------------------------------------------------1.00--------------------------------------
...........................................................................................CGGAGTCGGGGACTACT..............................................................................................................................................1711.001.00----------------------------------------------------1.00----------------------------------------------
.......................................................................................................................................AGGGTCACAGAGTCTGGCGGA..............................................................................................2111.001.00------1.00--------------------------------------------------------------------------------------------
.............................................................................................................................................................................CCGGCAGGAGGCTAGAAGGG.........................................................2011.001.00--1.00------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................................GAGTATAACGGGGGAACGG...........1911.001.00------------------------------------------------------------------------------1.00--------------------
............................................................................................................................................CACAGAGTCTGGCGGAGTGGAAA.......................................................................................2311.001.00---------------------------------------1.00-----------------------------------------------------------
...............................................................................................................................................................................................GGCTGGAATCTGTTTTAGGACTGGGATTGGA............................3111.001.00--------------------------------------------------1.00------------------------------------------------
............................................................................................................................................................................CCCGGCAGGAGGCTAGA.............................................................1711.001.00-----------------------------------------------------1.00---------------------------------------------
.....................................................................................................................AGGCAGTGTGACAGGGG....................................................................................................................1711.001.00----------------------------------------------------------------------1.00----------------------------
.............................................................................................................................................ACAGAGTCTGGCGGAGTGGAAACAGC...................................................................................2611.001.00--------------------------------------------------------------------------------1.00------------------
................................................................................................................................................GAGTCTGGCGGAGTGGAAA.......................................................................................1911.001.00-------------------------------------------------------------------------1.00-------------------------
.............................................................................................................................................ACAGAGTCTGGCGGAGTGGAAACAGCTTGGC..............................................................................3111.001.00---------------------1.00-----------------------------------------------------------------------------
......................................................................................................................................................................................................ATCTGTTTTAGGACTGGGATTGGA............................2411.001.00-------------------------------------------------1.00-------------------------------------------------
..............................................................................................................................................................................CGGCAGGAGGCTAGAAGGGCTGGAATCTGTA.............................................311.000.00----------------------------------------------------------------------------------------1.00----------
........................................................................................................................................................CGGAGTGGAAACAGCTTGGCCCCGGCAGGAGCC.................................................................331.000.00-----------------1.00---------------------------------------------------------------------------------
.............................................................................................GAGTCGGGGACTACTGGGGAAAGG.....................................................................................................................................2411.001.00-------------------1.00-------------------------------------------------------------------------------
.........................................................................................................................................................................................TAGAAGGGCTGGAATCTGT..............................................1911.001.00--1.00------------------------------------------------------------------------------------------------
....................................................................................................................................................CTGGCGGAGTGGAAACAGCTT.................................................................................2111.001.00----------------1.00----------------------------------------------------------------------------------
...........................................................................................................................................................................................................TTTTAGGACTGGGATTGGAGTATA.......................2411.001.00-------------------------------1.00-------------------------------------------------------------------
.......................................................................................................................................................................................................TCTGTTTTAGGACTGGGA.................................1821.001.00------------1.00--------------------------------------------------------------------------------------
.....................................................................................................................................................................................AGGCTAGAAGGGCTGGTGG..................................................191.000.00------------------------------------------------------------------------1.00--------------------------
........................................................................................................................................................CGGAGTGGAAACAGCTTG................................................................................1811.001.00--------------------------------------------------------------1.00------------------------------------
......................................................................................................................................................GGCGGAGTGGAAACAGCTTGGC..............................................................................2211.001.00--------------------------------------------------------1.00------------------------------------------
...................................................................................................................................................................................................................................ACGGGGGAACGGTTAAGGAGCT.2211.001.00----------------------------------------------------------------------------------1.00----------------
.................................................................................................................................................AGTCTGGCGGAGTGGAAAC......................................................................................1911.001.001.00--------------------------------------------------------------------------------------------------
............................................................................................................................................................................................................TTTAGGACTGGGATTGG.............................1711.001.00-------1.00-------------------------------------------------------------------------------------------
................................................................................................................AAAGGAGGCAGTGTGACAGGGG....................................................................................................................2211.001.00---------------1.00-----------------------------------------------------------------------------------
..........................................................GGCGAGGAGGGAGGGGTCGG............................................................................................................................................................................201.000.00------------------------------------------------------------------1.00--------------------------------
.............................................................................................................................................................................................................TTAGGACTGGGATTGGAGTAT........................2111.001.00-------------------------------------------------------1.00-------------------------------------------
.....................................................................................................................................................................................AGGCTAGAAGGGCTGGAATCTGTTT............................................2511.001.00--1.00------------------------------------------------------------------------------------------------
..........................................................................................................................................GTCACAGAGTCTGGCGGAGTGGA.........................................................................................2311.001.00-----------------------------------1.00---------------------------------------------------------------
......................................................................................................................................CAGGGTCACAGAGTCTGGCGGAGTG...........................................................................................2511.001.00---------------------------------------------------------1.00-----------------------------------------
.......................................................CAGGGCGAGGAGGGAGGGGA...............................................................................................................................................................................2011.001.00--------------------1.00------------------------------------------------------------------------------
...........................................................................................................TGGGGAAAGGAGGCAGTG.............................................................................................................................1811.001.00-----------------------------------------------------------------------------------------1.00---------
......................................................................................................ACTACTGGGGAAAGGAGGCA................................................................................................................................2011.001.00--------------------------------1.00------------------------------------------------------------------
..............................................................................................................................................CAGAGTCTGGCGGAGTGGAAAA......................................................................................221.000.00-------------------1.00-------------------------------------------------------------------------------
........................................................................................................................................................................................CTAGAAGGGCTGGAATCTGT..............................................2011.001.001.00--------------------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................ACGGGGGAACGGTTAAGGAGCTG2311.001.00-------------------------------1.00-------------------------------------------------------------------
......................................................................................GGGGGCGGAGTCGGGGGACG................................................................................................................................................201.000.00------------------1.00--------------------------------------------------------------------------------
....................................................................................................................................................CTGGCGGAGTGGAAACAGCTTG................................................................................2211.001.00-------------------------------------------------------------------1.00-------------------------------
...........................................................................................................................TGTGACAGGGGCAGGGT..............................................................................................................1720.500.50-----------------------------------------------------------------------------------------------0.50---
.....................................................................................................................................................TGGCGGAGTGGAAACAGC...................................................................................1820.500.50-------------------------------------0.50-------------------------------------------------------------
....................................................................................................................................................CTGGCGGAGTGGAAACAGC...................................................................................1920.500.50------------------------------------------------------------------------------------------------0.50--
.................................................................................................................AAGGAGGCAGTGTGACAG.......................................................................................................................1820.500.50---0.50-----------------------------------------------------------------------------------------------

Antisense strand
TGGTGACGGGCAGTAGCTATGAGAGCCCGCCCCCCGACTTCCGGGGCCAGGTGGCCAGGGCGAGGAGGGAGGGGACCTACAGGCATGGGGGCGGAGTCGGGGACTACTGGGGAAAGGAGGCAGTGTGACAGGGGCAGGGTCACAGAGTCTGGCGGAGTGGAAACAGCTTGGCCCCGGCAGGAGGCTAGAAGGGCTGGAATCTGTTTTAGGACTGGGATTGGAGTATAACGGGGGAACGGTTAAGGAGCTG
...............................................................................................................................................(((.((..((....((....))..((((((((....)).))))))....))..)).)))................................................
...............................................................................................................................................144............................................................207.........................................
SizePerfect hitTotal NormPerfect NormSRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR039190(GSM494809)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR029127(GSM416756)
A549. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		TAX577745(Rovira)
total RNA. (breast)		DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		SRR040029(GSM532914)
G026T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)		SRR038857(GSM458540)
D20. (cell line)		GSM532879(GSM532879)
G659N. (cervix)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR040035(GSM532920)
G001T. (cervix)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR444061(SRX128909)
Sample 19cDNABarcode: AF-PP-341: ACG CTC TTC . (skin)		SRR191409(GSM715519)
19genomic small RNA (size selected RNA from t. (breast)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR033712(GSM497057)
Burkitt Lymphoma (BL510). (B cell)		SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577580(Rovira)
total RNA. (breast)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR039191(GSM494810)
PBMCs were isolated by ficoll gradient from t. (blood)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR037935(GSM510473)
293cand3. (cell line)		SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR060985(GSM569189)
Human naive B cell [09-001]. (cell line)		SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033710(GSM497055)
GCB DLBCL (GCB385). (B cell)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR343333(GSM796036)
KSHV (HHV8). (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR191589(GSM715699)
69genomic small RNA (size selected RNA from t. (breast)		SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR189785SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040025(GSM532910)
G613T. (cervix)		SRR191416(GSM715526)
34genomic small RNA (size selected RNA from t. (breast)		SRR038861(GSM458544)
MM466. (cell line)		SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR039635(GSM518472)
THP1_nuc_sRNAs. (cell line)		TAX577579(Rovira)
total RNA. (breast)		SRR038860(GSM458543)
MM426. (cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577589(Rovira)
total RNA. (breast)		SRR444054(SRX128902)
Sample 14cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR207119(GSM721081)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR191486(GSM715596)
125genomic small RNA (size selected RNA from . (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR038852(GSM458535)
QF1160MB. (cell line)		SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR444050(SRX128898)
Sample 10cDNABarcode: AF-PP-335: ACG CTC TTC . (skin)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR038863(GSM458546)
MM603. (cell line)		SRR191601(GSM715711)
58genomic small RNA (size selected RNA from t. (breast)
......................................................................................GGGGGCGGAGTCGGGGGCC................................................................................................................................................. 191.000.00-----------------------------------------------------------------------1.00---------------------------
.........................................................................................................................................................................GGCCCCGGCAGGAGGCTGC.............................................................. 191.000.00---------------------------------1.00-----------------------------------------------------------------
...................TGAGAGCCCGCCCCCCGC..................................................................................................................................................................................................................... 181.000.00---------------------------1.00-----------------------------------------------------------------------
....................................................................................................................................................................................................GAATCTGTTTTAGGATTT.................................... 181.000.00------------------------------------------------------------------------------------------1.00--------
....................GAGAGCCCGCCCCCCGG..................................................................................................................................................................................................................... 171.000.00---------------------------1.00-----------------------------------------------------------------------
...............................................................................................GTCGGGGACTACTGGGGATCA...................................................................................................................................... 211.000.00-------------1.00-------------------------------------------------------------------------------------
.......................GTCGGGGGGCGGGCT.................................................................................................................................................................................................................... 1531.001.00-------------------------------------------------------------------------------------1.00-------------
......................................................................................GGGGGCGGAGTCGGGGCGGC................................................................................................................................................ 201.000.00-----------------------------------1.00---------------------------------------------------------------