ID: uc001scc.2_intron_13_0_chr12_53594231_r.5p
GENE: (2)
chr12:53594656-53594905-


(1)
AGO1.ip 		(1)
AGO2.ip 		(1)
AGO3.ip 		(9)
B-CELL 		(1)
BRAIN 		(14)
BREAST 		(31)
CELL-LINE 		(5)
CERVIX 		(3)
HEART 		(1)
KIDNEY 		(7)
LIVER 		(2)
OTHER 		(2)
RRP40.ip 		(9)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
TCTGGTCTGTTTCCTGTTTGGCTCTTCTACCACTACGGCTTGGGATCTCGGTAAATAGAACTGGGTGCAGACTTTAGTGCTTTCAGGCTCAGTCCCCAAATCCTTTAGTAGGCCATTTTGCCCACCTTGGCCACATGAAGTCTGCACACAGGAAGGACAGATCTTCTCTGAGGCCCCTATTTTTTTTTTTTTTAAGACAGATTCTTGCTTTGTCACCCAGGCTGGTGTGCAGTGGTGTGATCTCGGCTCA
..............................................................................((.((((((.((.((((.....((((...(((((((((...(((......)))...)))..))))))....)))).)))).)).....))))))))............................................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785SRR189783SRR343335SRR189786SRR343334SRR189787SRR343337SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577590(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
..................................................................................TCAGGCTCAGTCCCCCCCG.....................................................................................................................................................1910112.000.007377.001349.00835.00471.0028.004.0027.002.007.007.004.00------------------------------------1.00-------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCG......................................................................................................................................................18466.000.00281.00133.0022.0019.002.001.006.00-2.00----------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCCA.....................................................................................................................................................19420.000.00232.00101.0035.0050.00---2.00-----------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACCCG....................................................................................................................................................204302.753.50244.5029.2522.500.751.00-0.500.251.502.00---------------------------------------------------------------------------------0.25--0.25--
..................................................................................TCAGGCTCAGTCCCCG........................................................................................................................................................16257.000.0086.00131.0018.0016.002.00-1.00-1.002.00---------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCG.......................................................................................................................................................17192.000.0046.00130.006.004.001.00-1.00---------------3.00--1.00-----------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGAT......................................................................................................................................................18162.000.0062.0045.00-1.003.0018.006.0015.002.001.00-1.00---1.00---------1.00-2.00-1.00--------------1.00---------------------1.00------1.00-----------------------
..................................................................................TCAGGCTCAGTCCCCCCGA.....................................................................................................................................................19149.000.0092.0029.005.002.006.006.002.001.002.00-1.00----------1.00-------------------------------------------------1.00----------1.00--------------
..................................................................................TCAGGCTCAGTCCCCCGAT.....................................................................................................................................................19145.000.0025.0053.001.00-3.0012.001.007.002.002.001.003.00---3.002.00-3.00----2.00--3.00-1.001.002.001.001.00--1.001.002.00-2.00--2.00--1.00-----1.00-----------1.00---1.001.001.00----1.00---------1.00------------
..................................................................................TCAGGCTCAGTCCCCGA.......................................................................................................................................................17106.000.0064.0020.003.00-5.002.002.005.00---2.00---1.00----------------1.00---1.00------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCCT.....................................................................................................................................................1962.000.0044.004.0013.001.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCCC.....................................................................................................................................................1962.000.0036.0023.002.001.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGA......................................................................................................................................................1859.000.0021.0017.00--3.00-3.003.00---1.00----2.00-1.00-1.00------------1.00-------1.00--1.00-----1.00----------1.00---1.00----------1.00--------------------
..................................................................................TCAGGCTCAGTCCCCCCC......................................................................................................................................................1846.000.0029.0014.001.00-2.00--------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGCG.....................................................................................................................................................1930.000.0027.002.00-1.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCAG.....................................................................................................................................................1930.000.0026.003.00-1.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCTCG.....................................................................................................................................................1922.000.0016.005.001.00----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCACG.....................................................................................................................................................1920.000.0016.003.00-1.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCC.......................................................................................................................................................1717.000.009.005.00--2.001.00-------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCTG.....................................................................................................................................................1916.000.0012.003.001.00----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCA......................................................................................................................................................1815.000.004.008.003.00----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCGG.....................................................................................................................................................1912.000.008.003.00---1.00-------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGATT.....................................................................................................................................................1910.000.001.00----2.00-2.00---1.00--------1.00-------------------1.00--------------1.00-----------------------1.00-----------------
..................................................................................TCAGGCTCAGTCCCCACCG.....................................................................................................................................................1949.253.506.502.00-0.75---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGTT......................................................................................................................................................189.000.002.002.00---1.00-1.00---1.00---------1.00-------------------------------------------------------1.00-------------------
..................................................................................TCAGGCTCAGTCCCCAACCG....................................................................................................................................................208.000.006.002.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGCCC.....................................................................................................................................................196.000.00-6.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGAC......................................................................................................................................................186.000.004.001.00---1.00-------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGCCG.....................................................................................................................................................196.000.005.001.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGT.......................................................................................................................................................175.000.005.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGAA.....................................................................................................................................................195.000.00-1.00-------------------1.00---------1.00---1.00-----------------------------------------------1.00-------------
..................................................................................TCAGGCTCAGTCCCCGATA.....................................................................................................................................................195.000.00-----3.00--------------1.00------------------------1.00---------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGAG......................................................................................................................................................184.000.001.002.00-----------------------------------------1.00-----------------------------------------------------
.................................TACGGCTTGGGATCTCG........................................................................................................................................................................................................1714.004.00----------------------------------2.00-----------------1.00---------1.00----------------------------------
..................................................................................TCAGGCTCAGTCCCCCGAC.....................................................................................................................................................194.000.001.001.00-----2.00-----------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCA........................................................................................................................................................1643.503.502.000.75-0.25--------------------------------------------------------------------------------------0.50------
..................................................................................TCAGGCTCAGTCCCCCAAT.....................................................................................................................................................193.000.00---3.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGCT.....................................................................................................................................................193.000.001.002.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCGT.....................................................................................................................................................193.000.002.00------------------------1.00-----------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGAA......................................................................................................................................................183.000.001.001.00-----1.00-----------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCTA.....................................................................................................................................................193.000.001.002.00-----------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................ACCCAGGCTGGTGTGCAGTGAGA.............233.000.00------------------------3.00------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGTTT.....................................................................................................................................................193.000.00-2.00------------------------------------1.00----------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGTTA.....................................................................................................................................................193.000.00-2.00-----1.00-----------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCAA.....................................................................................................................................................193.000.002.001.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCGC.....................................................................................................................................................193.000.00-2.00--------------------------------------1.00--------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCAGA.....................................................................................................................................................192.000.001.00--1.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCAC.....................................................................................................................................................192.000.001.001.00-----------------------------------------------------------------------------------------------
..TGGTCTGTTTCCTGTTGTTG....................................................................................................................................................................................................................................202.000.00-1.00-----1.00-----------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCAT.....................................................................................................................................................192.000.002.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACCCT....................................................................................................................................................2042.003.500.751.000.25----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGTT.....................................................................................................................................................192.000.00---------------------------1.00----------1.00----------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGAAA.....................................................................................................................................................192.000.00--1.00-------------1.00--------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGATC.....................................................................................................................................................192.000.00-1.00--------------------------1.00--------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAACCGA...................................................................................................................................................212.000.001.001.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTCCG.......................................................212.000.00--------------2.00----------------------------------------------------------------------------------
..................................ACGGCTTGGGATCTCG........................................................................................................................................................................................................1612.002.00-------------------------------------------1.00--------------------------1.00--------------------------
..................................................................................TCAGGCTCAGTCCCCACCGA....................................................................................................................................................2041.753.501.50--0.25---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACACG....................................................................................................................................................2041.503.50-1.250.25----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACCAG....................................................................................................................................................2041.503.500.750.75-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACTCG....................................................................................................................................................2041.503.501.000.50-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACCGG....................................................................................................................................................2041.253.500.750.50-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACCCA....................................................................................................................................................2041.253.500.250.500.50----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCTT......................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------------------------
.............................................TCTCGGTAAATAGAACTCTG.........................................................................................................................................................................................201.000.00--------------------------------------------------------------------------------1.00----------------
..................................................................................TCAGGCTCAGTCCCCCGAG.....................................................................................................................................................191.000.00-----------1.00-------------------------------------------------------------------------------------
...................................................................................................................................................................................................................................TGCAGTGGTGTGATCTCGGAAA.221.000.00------------------------------------------------------------------------1.00------------------------
...............................................................................................................................................................................CCTATTTTTTTTTTTTTTATG......................................................211.000.00--------------1.00----------------------------------------------------------------------------------
...............................................................................................................................................................................CCTATTTTTTTTTTTTTTATTG.....................................................221.000.00------------1.00------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGGCG.....................................................................................................................................................191.000.001.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................TGAGGCCCCTATTTTTA.................................................................171.000.00-----------------------------------------------------1.00-------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCAAG.....................................................................................................................................................191.000.001.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCAG......................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGCA.....................................................................................................................................................191.000.001.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACG......................................................................................................................................................1841.003.500.500.50-----------------------------------------------------------------------------------------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTAAGTCT...................................................221.000.00-----------------1.00-------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCTTG.....................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------------------------------------
...............................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAG.....................................................221.000.00-------------------1.00-----------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGC......................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTCTTC.......................................................211.000.00------------1.00------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGCCT.....................................................................................................................................................191.000.00---------------------------------1.00---------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGCT......................................................................................................................................................181.000.001.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCTCT.....................................................................................................................................................191.000.001.00------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................................TCACCCAGGCTGGTGTGGGGC.................211.000.00-------------1.00-----------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAAC......................................................................................................................................................181.000.001.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAATCG....................................................................................................................................................201.000.00-1.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAACCT....................................................................................................................................................201.000.00-1.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCT.......................................................................................................................................................171.000.00---1.00---------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGTCG.....................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------------------------------------
................................................................................................................................................................................CTATTTTTTTTTTTTTTATTAG....................................................221.000.00--------------1.00----------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGACT.....................................................................................................................................................191.000.00-----1.00-------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCATCCG....................................................................................................................................................2041.003.50-1.00-----------------------------------------------------------------------------------------------
...............................................TCGGTAAATAGAACTGGGTGCTCTG..................................................................................................................................................................................251.000.00-----------1.00-------------------------------------------------------------------------------------
............CCTGTTTGGCTCTTCTAA............................................................................................................................................................................................................................181.000.00---------------------------------------------------------------------------------------1.00---------
..................................................................................TCAGGCTCAGTCCCCCGT......................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCTCC.....................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------------------------------------
.........................................................................................................................................................................................................................CAGGCTGGTGTGCAGTGGGTCG...........221.000.00----------------------------1.00--------------------------------------------------------------------
.......................................................................................................................................................................................................................CCCAGGCTGGTGTGCAGTCTCA.............221.000.00----------------------------------------------------------1.00--------------------------------------
.....................................................................................................................................................................................................................CACCCAGGCTGGTGTGCAGTGGAAT............251.000.00---------------------------------------------------------------------------1.00---------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTCTG........................................................201.000.00-------------------1.00-----------------------------------------------------------------------------
...................................................................................................................TTTTGCCCACCTTGGCTAG....................................................................................................................191.000.00-----------------------------------------------------------1.00-------------------------------------
..................................................................................TCAGGCTCAGTCCCCAACAGC...................................................................................................................................................211.000.00-1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTTACCAG....................................................241.000.00----------1.00--------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCGGA.....................................................................................................................................................191.000.001.00------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTCCC........................................................201.000.00----------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTTATTT.....................................................231.000.00------------1.00------------------------------------------------------------------------------------
..TGGTCTGTTTCCTGTTGACG....................................................................................................................................................................................................................................201.000.00-------1.00-----------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCCT......................................................................................................................................................181.000.001.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGCC......................................................................................................................................................181.000.001.00------------------------------------------------------------------------------------------------
........................................................................................................................................................................TGAGGCCCCTATTTTCATT...............................................................191.000.00---------------------------------------------------------1.00---------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTAATG.........................................................191.000.00-------------------1.00-----------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGCA......................................................................................................................................................181.000.00-1.00-----------------------------------------------------------------------------------------------
.................................................................................................................................................................................TATTTTTTTTTTTTTTATTAG....................................................211.000.00------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................................TCACCCAGGCTGGTGTGCATTGA...............231.000.00-----------------1.00-------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTCAGG.......................................................211.000.00----------------------------------------------------------------------------------------1.00--------
...............................................................................................................................................................................CCTATTTTTTTTTTTTTTCAAT.....................................................221.000.00------------1.00------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGTAA.....................................................................................................................................................191.000.00------------------------------------------------------------1.00------------------------------------
..................................................................................TCAGGCTCAGTCCCCAAAA.....................................................................................................................................................191.000.00------------------------------------------------1.00------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGC.......................................................................................................................................................171.000.00-1.00-----------------------------------------------------------------------------------------------
.................................................................................................................................................................................................................TTGTCACCCAGGCTGGTGTGCAGCGG...............261.000.00-----------------1.00-------------------------------------------------------------------------------
..................................................................................................................................CCACATGAAGTCTGCACACAGGAAGGACAG..........................................................................................3011.001.00-------------------------------------------------1.00-----------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAAAG.....................................................................................................................................................191.000.00-------------------------------------------------------------------------------------1.00-----------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTTGTT......................................................221.000.00----------1.00--------------------------------------------------------------------------------------
.................................................................................TTCAGGCTCAGTCCCCA........................................................................................................................................................1711.001.00-1.00-----------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTTACG......................................................221.000.00------------1.00------------------------------------------------------------------------------------
....................................................................................................................................................................................................................................GCAGTGGTGTGATCTCGGCTCAACG251.000.00-----------------------1.00-------------------------------------------------------------------------
...............................................................................................................................................................................CCTATTTTTTTTTTTTTTAAATT....................................................231.000.00--------------1.00----------------------------------------------------------------------------------
...............................................................................................................................................................................CCTATTTTTTTTTTTTTTCTTC.....................................................221.000.00----------1.00--------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTGAT.......................................................211.000.00----------1.00--------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAAGT.....................................................................................................................................................191.000.00----------------------------------------------------------------1.00--------------------------------
..................................................................................TCAGGCTCAGTCCCCGCTT.....................................................................................................................................................191.000.00-----------------------------------------------------------------------------------------1.00-------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTCCG........................................................201.000.00------------1.00------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAAACGAT..................................................................................................................................................221.000.001.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCTAG.....................................................................................................................................................191.000.00-1.00-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCCTG......................................................................................................................................................181.000.001.00------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCGACA.....................................................................................................................................................191.000.00-----1.00-------------------------------------------------------------------------------------------
......................................................................................................................................................................................................................................AGTGGTGTGATCTCGGCTCAAGGA241.000.00--------------------------------------------------------------------------------------1.00----------
...............................................................................................................................................................................CCTATTTTTTTTTTTTTTAAGACCATG................................................271.000.00--------------1.00----------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAGCCG....................................................................................................................................................2040.753.500.75------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACGCG....................................................................................................................................................2040.503.500.50------------------------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTTAAG......................................................2240.500.50-------------------0.50-----------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAT.......................................................................................................................................................1740.503.50-0.50-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACAAG....................................................................................................................................................2040.503.50-0.50-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACAC.....................................................................................................................................................1940.503.50-0.50-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACCTG....................................................................................................................................................2040.503.500.50------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACGA.....................................................................................................................................................1940.253.500.25------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACGTT....................................................................................................................................................2040.253.50-0.25-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCATTA.....................................................................................................................................................1940.253.500.25------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACA......................................................................................................................................................1840.253.500.25------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCATA......................................................................................................................................................1840.253.50----------------------------------------------0.25--------------------------------------------------
..........................................................................................................................................................................AGGCCCCTATTTTTTTTT..............................................................1840.250.25--------------------------------------------------------------------------------------------0.25----
..................................................................................TCAGGCTCAGTCCCCAGTCG....................................................................................................................................................2040.253.500.25------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCAGA......................................................................................................................................................1840.253.50---------------------------------------------------------------------------------------------0.25---
..................................................................................TCAGGCTCAGTCCCCACCTA....................................................................................................................................................2040.253.500.25------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACGAT....................................................................................................................................................2040.253.500.25------------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCACTCA....................................................................................................................................................2040.253.50-0.25-----------------------------------------------------------------------------------------------
..................................................................................TCAGGCTCAGTCCCCATCG.....................................................................................................................................................1940.253.500.25------------------------------------------------------------------------------------------------

Antisense strand
TCTGGTCTGTTTCCTGTTTGGCTCTTCTACCACTACGGCTTGGGATCTCGGTAAATAGAACTGGGTGCAGACTTTAGTGCTTTCAGGCTCAGTCCCCAAATCCTTTAGTAGGCCATTTTGCCCACCTTGGCCACATGAAGTCTGCACACAGGAAGGACAGATCTTCTCTGAGGCCCCTATTTTTTTTTTTTTTAAGACAGATTCTTGCTTTGTCACCCAGGCTGGTGTGCAGTGGTGTGATCTCGGCTCA
..............................................................................((.((((((.((.((((.....((((...(((((((((...(((......)))...)))..))))))....)))).)))).)).....))))))))............................................................................
.............................................................................78........................................................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR189784SRR189782SRR189785SRR189783SRR343335SRR189786SRR343334SRR189787SRR343337SRR343336SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR189776(GSM714636)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		TAX577739(Rovira)
total RNA. (breast)		TAX577741(Rovira)
total RNA. (breast)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		TAX577738(Rovira)
total RNA. (breast)		SRR189778(GSM714638)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577745(Rovira)
total RNA. (breast)		TAX577743(Rovira)
total RNA. (breast)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		TAX577590(Rovira)
total RNA. (breast)		SRR038859(GSM458542)
MM386. (cell line)		TAX577742(Rovira)
total RNA. (breast)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR033729(GSM497074)
splenic MZL (Splenic414). (B cell)		SRR553574(SRX182780)
source: Heart. (Heart)		SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)		SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)		SRR040018(GSM532903)
G701N. (cervix)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		TAX577580(Rovira)
total RNA. (breast)		SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)		DRR000562(DRX000320)
Isolation of RNA following immunoprecipitatio. (ago3 cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR444056(SRX128904)
Sample 28cDNABarcode: AF-PP-333: ACG CTC TTC . (skin)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR040028(GSM532913)
G026N. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR037937(GSM510475)
293cand2. (cell line)		SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)		SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR191631(GSM715741)
75genomic small RNA (size selected RNA from t. (breast)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR040007(GSM532892)
G601T. (cervix)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR038861(GSM458544)
MM466. (cell line)		SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)		SRR029126(GSM416755)
143B. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR038860(GSM458543)
MM426. (cell line)		SRR038857(GSM458540)
D20. (cell line)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		TAX577453(Rovira)
total RNA. (breast)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR040035(GSM532920)
G001T. (cervix)		DRR000560(DRX000318)
Isolation of RNA following immunoprecipitatio. (ago1 cell line)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR033711(GSM497056)
GCB DLBCL (GCB110). (B cell)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR040015(GSM532900)
G623T. (cervix)		SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)		SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR029131(GSM416760)
MCF7. (cell line)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)
...........................................................................................................................................................................................................................GGCTGGTGTGCAGTGGTGTGATGGGG..... 262.000.00-------------2.00-----------------------------------------------------------------------------------
..........................................................................................................................................................................................................................AGGCTGGTGTGCAGTGGTGTGATTGGG..... 271.000.00----------1.00--------------------------------------------------------------------------------------
........................................................................................................................................................................................................................CCAGGCTGGTGTGCAGTGGTGTGATCA....... 271.000.00-----------------1.00-------------------------------------------------------------------------------
...........................................................................................................................................................................................................................GGCTGGTGTGCAGTGGTGTGATGGGC..... 261.000.00-------------1.00-----------------------------------------------------------------------------------
............................................................................................................................................................................................TTTTTAAGACAGATTCTGTA.......................................... 201.000.00------------------------------------------------------------------------------1.00------------------
..........................................................................................................................................................................................................................AGGCTGGTGTGCAGTCGTC............. 191.000.00----------------------------------------------1.00--------------------------------------------------
...........................................................................................................................................................................................................................GGCTGGTGTGCAGTGGTGTGGGC........ 231.000.00-------------1.00-----------------------------------------------------------------------------------
..............................................................................................................................................................................CCCTATTTTTTTTTTTTTAGT....................................................... 211.000.00------------------------------------------------------1.00------------------------------------------
......................................................................................GCTCAGTCCCCAAATCAGG................................................................................................................................................. 191.000.00---------------------------------------------------------------------------------1.00---------------
...........................................................................................................................................................................................................................GGCTGGTGTGCAGTGGTGTGGGG........ 231.000.00-------------1.00-----------------------------------------------------------------------------------
.......................................................................................................................................................................................................................CCCAGGCTGGTGTGCAGTGGTGTGATGGG...... 291.000.00-------------1.00-----------------------------------------------------------------------------------
........................................................................................................................................................AAGGACAGATCTTCTAGTA............................................................................... 191.000.00-----------------------------------------1.00-------------------------------------------------------
.....................................................................................................................................................................................................CAGATTCTTGCTTTGTCACCCAGGCTGAA........................ 291.000.00--------------------------------------------------------1.00----------------------------------------
.....................................................................................................................................................................................................GGTGACAAAGCAAGAATCTG................................. 2060.170.17-----------------------------------------------------------------------------------------------0.17-
.....................................................................................................................................................................................................TGACAAAGCAAGAATCTG................................... 1870.140.14------------------------------------------------------------------------------------------------0.14