ID: uc001sbl.2_intron_18_0_chr12_53454340_f
GENE: (19)
chr12:53454290-53454508+


(1)
AGO1.ip
(6)
B-CELL
(5)
BRAIN
(39)
BREAST
(25)
CELL-LINE
(13)
CERVIX
(1)
FIBROBLAST
(9)
HEART
(2)
HELA
(1)
KIDNEY
(8)
LIVER
(2)
OTHER
(55)
SKIN
(2)
UTERUS
(1)
XRN.ip

Sense strand
GGTCCCTCCACGCCCCTGCACACCAGCAGTCCAGTCCAGGGCAAGGAAAGGTATGCAGAGGGGCCGGGGATGCTCGAGTGCTTTCTTGTCCAAGCAGTTGATGAAGGCAGGTGGGGTGGGAGCAGCCACAATGGGGGCTCTGCTGACCATCTGCCCTTCCACCCTACAGCACCCGGCGACAGGACACCAGGTCCCCCACCTCAGCGCCCACTCAGAGAC
..............................................................................(((((((((((....)))).....))))))).(((((((((((((((.....((((.(((...)))..))))))))..)))))))))))....................................................
...........................................................................76...........................................................................................169................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM532885(GSM532885)
G850N. (cervix)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)
SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040041(GSM532926)
G612T. (cervix)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR029131(GSM416760)
MCF7. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGT.................................................22178.0013.002.005.004.00-2.002.005.002.00---2.00-3.001.001.001.001.002.002.00-2.001.001.001.00-1.001.001.00---1.001.001.00-2.001.00----2.002.00-2.001.00----1.00-1.001.00---1.00----1.00--1.00--1.00-------1.00-1.001.00----1.00-1.001.00------1.00--------1.001.001.00--1.00-1.001.001.00--1.00------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAG..................................................21113.0013.008.00----1.00--1.00------1.00---1.00------1.00------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGTA................................................2318.0013.00-------1.00--------1.00---1.00--------------------------1.00--2.00--------------------------------1.00------------1.00--------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGA.................................................2217.0013.00----1.00----------1.00------------------1.00-------------2.00---------------------------1.00----------------------------------------1.00-----------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACA...................................................2017.007.00--1.00-1.00--------1.00---1.00----------------------------1.00----------------------------1.00----------------1.00------------------------------------------------------------------------------
.....................................................................................................................................................TCTGCCCTTCCACCCTACAGT.................................................2117.001.00----1.00---1.00-------1.00--1.00---------------------2.00-------------------------------------------------1.00-------------------------------------------------------------------------------
...................................................................................................................................................CATCTGCCCTTCCACCCTACAGT.................................................234.000.00------------4.00--------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGTT................................................2313.0013.00-----1.00--------1.00-------1.00----------------------------------------------------------------------------------------------------------------------------------------------------
....................................CAGGGCAAGGAAAGGTATG....................................................................................................................................................................1912.002.00----------------------------------------2.00----------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TCTGCCCTTCCACCCTACAGTT................................................2212.001.00-----------2.00---------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................CTTTCTTGTCCAAGCAGTTGA......................................................................................................................2112.002.00----------2.00----------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTAC....................................................1912.002.00-1.00-------------------------------------------------------------------------------1.00-----------------------------------------------------------------------------------------
.................................GTCCAGGGCAAGGAAAG.........................................................................................................................................................................1721.501.50-----------------------------1.50---------------------------------------------------------------------------------------------------------------------------------------------
.........ACGCCCCTGCACACCAGCAGTCCA..........................................................................................................................................................................................2411.001.00--------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACACC.................................................2211.007.00------------------------------------------------------------------------------------------------------------------1.00--------------------------------------------------------
............................................................................................................................................................................CCGGCGACAGGACACC...............................1611.001.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGAG................................................2311.0013.00---------------------------------------------------1.00-----------------------------------------------------------------------------------------------------------------------
...........................................................................................AAGCAGTTGATGAAGACC..............................................................................................................181.000.00----------------------------------------------------------------------------------1.00----------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACACCA................................................2311.007.00----------------------------------------------------------------------------------------------1.00----------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAA..................................................2111.007.00--------------------------------------1.00------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TCTGCCCTTCCACCCTACAGA.................................................2111.001.00--1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TCTGCCCTTCCACCCTACACC.................................................211.000.00----1.00----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TCTGCCCTTCCACCCTACAGTTT...............................................2311.001.00------------------------------------------------------------------------------------1.00--------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACATT.................................................2211.007.00-----------------------------------------------------------------------------------------1.00---------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACCGT.................................................2211.002.00-------------------------------------------------------------------------------------------------------------------1.00-------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTATAG..................................................2111.001.00------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------
......................CCAGCAGTCCAGTCCAGGGCAAGGAAAGCACC.....................................................................................................................................................................321.000.00----------------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................................................................................................................TCTGCCCTTCCACCCTACAG..................................................2011.001.00--------------------------------------------------------------------------------------1.00------------------------------------------------------------------------------------
.......................CAGCAGTCCAGTCCAGGGCAAGGA............................................................................................................................................................................2411.001.00---------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------
.......................CAGCAGTCCAGTCCAGGGCAAGGAAAG.........................................................................................................................................................................2711.001.00-------------------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------
...................ACACCAGCAGTCCAGTCCAGGGC.................................................................................................................................................................................2311.001.00--------------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------
.............................TCCAGTCCAGGGCAAGGAAAGA........................................................................................................................................................................221.000.00-----1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTA.....................................................1811.001.00--1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGG.................................................2211.0013.00--1.00------------------------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGTAT...............................................2411.0013.00-1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
............CCCCTGCACACCAGCAGTCCAGTCCA.....................................................................................................................................................................................2611.001.00--------------------1.00------------------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................ATCTGCCCTTCCACCCTACAGC.................................................2211.001.00----------------1.00----------------------------------------------------------------------------------------------------------------------------------------------------------
................................................AGGTATGCAGAGGGGC...........................................................................................................................................................1621.001.00-1.00-------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Antisense strand
GGTCCCTCCACGCCCCTGCACACCAGCAGTCCAGTCCAGGGCAAGGAAAGGTATGCAGAGGGGCCGGGGATGCTCGAGTGCTTTCTTGTCCAAGCAGTTGATGAAGGCAGGTGGGGTGGGAGCAGCCACAATGGGGGCTCTGCTGACCATCTGCCCTTCCACCCTACAGCACCCGGCGACAGGACACCAGGTCCCCCACCTCAGCGCCCACTCAGAGAC
..............................................................................(((((((((((....)))).....))))))).(((((((((((((((.....((((.(((...)))..))))))))..)))))))))))....................................................
...........................................................................76...........................................................................................169................................................
SizePerfect hitTotal NormPerfect NormSRR189782SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)
SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)
SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)
SRR342896(SRX096792)
small RNA seq of Right atrial tissue. (heart)
SRR342900(SRX096796)
small RNA seq of Right atrial tissue. (heart)
SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)
SRR330915(SRX091753)
tissue: normal skindisease state: normal. (skin)
SRR330884(SRX091722)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)
SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)
SRR095854(SRX039177)
"miRNA were isolated from FirstChoice Human B. (brain)
SRR330904(SRX091742)
tissue: normal skindisease state: normal. (skin)
SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)
SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)
SRR330868(SRX091706)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)
SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)
SRR330922(SRX091760)
tissue: normal skindisease state: normal. (skin)
SRR330890(SRX091728)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330907(SRX091745)
tissue: normal skindisease state: normal. (skin)
SRR330880(SRX091718)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330908(SRX091746)
tissue: normal skindisease state: normal. (skin)
SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR207110(GSM721072)
Nuclear RNA. (cell line)
SRR039621(GSM531984)
HBV(+) HCC Tissue Sample 2. (liver)
SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)
SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330870(SRX091708)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)
SRR330894(SRX091732)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330869(SRX091707)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330886(SRX091724)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040039(GSM532924)
G531T. (cervix)
SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)
SRR207113(GSM721075)
IP against AGO 1 & 2. (ago1/2 cell line)
SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR553573(SRX182779)
source: Cerebellum. (Cerebellum)
SRR330909(SRX091747)
tissue: normal skindisease state: normal. (skin)
SRR191578(GSM715688)
100genomic small RNA (size selected RNA from . (breast)
SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)
SRR330861(SRX091699)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
SRR330874(SRX091712)
tissue: skin psoriatic involveddisease state:. (skin)
SRR207116(GSM721078)
Nuclear RNA. (cell line)
TAX577743(Rovira)
total RNA. (breast)
SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)
SRR330921(SRX091759)
tissue: normal skindisease state: normal. (skin)
SRR330881(SRX091719)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR040028(GSM532913)
G026N. (cervix)
SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330912(SRX091750)
tissue: normal skindisease state: normal. (skin)
SRR330914(SRX091752)
tissue: normal skindisease state: normal. (skin)
SRR040037(GSM532922)
G243T. (cervix)
SRR040038(GSM532923)
G531N. (cervix)
SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)
SRR189784SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)
SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191434(GSM715544)
171genomic small RNA (size selected RNA from . (breast)
GSM1105753INPUT(GSM1105753)
small RNA sequencing data. (hela)
SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)
DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)
SRR033719(GSM497064)
6hr Activated B cell line (ABC158). (B cell)
SRR037942(GSM510480)
293DroshaTN_cand5. (cell line)
SRR191436(GSM715546)
173genomic small RNA (size selected RNA from . (breast)
SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
SRR191598(GSM715708)
79genomic small RNA (size selected RNA from t. (breast)
SRR330900(SRX091738)
tissue: skin psoriatic uninvolveddisease stat. (skin)
TAX577588(Rovira)
total RNA. (breast)
SRR040010(GSM532895)
G529N. (cervix)
SRR191604(GSM715714)
74genomic small RNA (size selected RNA from t. (breast)
TAX577746(Rovira)
total RNA. (breast)
GSM450607(GSM450607)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)
SRR191554(GSM715664)
99genomic small RNA (size selected RNA from t. (breast)
SRR191633(GSM715743)
85genomic small RNA (size selected RNA from t. (breast)
SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)
SRR040011(GSM532896)
G529T. (cervix)
SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)
SRR191630(GSM715740)
70genomic small RNA (size selected RNA from t. (breast)
GSM416733(GSM416733)
HEK293. (cell line)
SRR038855(GSM458538)
D10. (cell line)
SRR040031(GSM532916)
G013T. (cervix)
SRR037931(GSM510469)
293GFP. (cell line)
SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)
SRR191549(GSM715659)
105genomic small RNA (size selected RNA from . (breast)
TAX577741(Rovira)
total RNA. (breast)
SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR029127(GSM416756)
A549. (cell line)
SRR033732(GSM497077)
bjab cell line (bjab103). (B cell)
SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
SRR330871(SRX091709)
tissue: skin psoriatic involveddisease state:. (skin)
SRR033720(GSM497065)
EBV activated B cell line (EBV159). (B cell)
SRR191618(GSM715728)
148genomic small RNA (size selected RNA from . (breast)
SRR330858(SRX091696)
tissue: skin psoriatic involveddisease state:. (skin)
TAX577744(Rovira)
total RNA. (breast)
SRR015360(GSM380325)
Plasma B cells (PC137). (B cell)
SRR033728(GSM497073)
MALT (MALT413). (B cell)
TAX577738(Rovira)
total RNA. (breast)
SRR191623(GSM715733)
18genomic small RNA (size selected RNA from t. (breast)
TAX577453(Rovira)
total RNA. (breast)
SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR038862(GSM458545)
MM472. (cell line)
SRR363674(GSM830251)
cell type: human foreskin fibroblasts (HFF)tr. (fibroblast)
GSM532885(GSM532885)
G850N. (cervix)
SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)
SRR553574(SRX182780)
source: Heart. (Heart)
SRR191479(GSM715589)
31genomic small RNA (size selected RNA from t. (breast)
SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)
SRR040040(GSM532925)
G612N. (cervix)
SRR040036(GSM532921)
G243N. (cervix)
GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191477(GSM715587)
2genomic small RNA (size selected RNA from to. (breast)
SRR191628(GSM715738)
52genomic small RNA (size selected RNA from t. (breast)
SRR191552(GSM715662)
42genomic small RNA (size selected RNA from t. (breast)
SRR330857(SRX091695)
tissue: skin psoriatic involveddisease state:. (skin)
GSM532876(GSM532876)
G547T. (cervix)
SRR037935(GSM510473)
293cand3. (cell line)
SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)
SRR191428(GSM715538)
160genomic small RNA (size selected RNA from . (breast)
SRR191421(GSM715531)
122genomic small RNA (size selected RNA from . (breast)
SRR330888(SRX091726)
tissue: skin psoriatic uninvolveddisease stat. (skin)
SRR191603(GSM715713)
71genomic small RNA (size selected RNA from t. (breast)
SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)
SRR191405(GSM715515)
55genomic small RNA (size selected RNA from t. (breast)
SRR330885(SRX091723)
tissue: skin psoriatic uninvolveddisease stat. (skin)
GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191466(GSM715576)
114genomic small RNA (size selected RNA from . (breast)
SRR191481(GSM715591)
43genomic small RNA (size selected RNA from t. (breast)
SRR191535(GSM715645)
181genomic small RNA (size selected RNA from . (breast)
SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)
SRR029128(GSM416757)
H520. (cell line)
SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)
SRR330875(SRX091713)
tissue: skin psoriatic involveddisease state:. (skin)
SRR191627(GSM715737)
45genomic small RNA (size selected RNA from t. (breast)
SRR191432(GSM715542)
169genomic small RNA (size selected RNA from . (breast)
SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)
SRR330918(SRX091756)
tissue: normal skindisease state: normal. (skin)
SRR191423(GSM715533)
137genomic small RNA (size selected RNA from . (breast)
SRR191431(GSM715541)
168genomic small RNA (size selected RNA from . (breast)
GSM450599(GSM450599)
miRNA sequencing raw reads from post-mortem s. (brain)
SRR191448(GSM715558)
143genomic small RNA (size selected RNA from . (breast)
SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)
SRR330916(SRX091754)
tissue: normal skindisease state: normal. (skin)
SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)
SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)
SRR040041(GSM532926)
G612T. (cervix)
SRR191420(GSM715530)
122genomic small RNA (size selected RNA from . (breast)
SRR037936(GSM510474)
293cand1. (cell line)
SRR553575(SRX182781)
source: Kidney. (Kidney)
DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
SRR330864(SRX091702)
tissue: skin psoriatic involveddisease state:. (skin)
SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)
SRR191408(GSM715518)
88genomic small RNA (size selected RNA from t. (breast)
GSE20417(GSM514985)
Colon and lung cancer pool.
SRR029131(GSM416760)
MCF7. (cell line)
SRR040035(GSM532920)
G001T. (cervix)
SRR037933(GSM510471)
293cand4_rep2. (cell line)
SRR330859(SRX091697)
tissue: skin psoriatic involveddisease state:. (skin)
DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)
................................................................................................................................................................ACCCTACAGCACCCGGTT......................................... 1828.500.00--------0.500.501.00------0.50--1.00-0.501.000.50-0.50--0.501.50-0.50--1.00--------1.00---------0.500.50-1.00----0.500.50-1.000.50-------------------------------1.001.00------------------0.500.50--0.500.500.50----0.500.50-0.500.50-0.50-0.500.50---0.500.500.500.500.500.50--0.500.500.500.50-0.50---------------
................................................................................................................................................................ACCCTACAGCACCCGTT.......................................... 1717.000.00---3.00-----2.50--0.50----0.501.00--0.50-0.50----0.500.50----0.501.000.50---------------0.500.50--0.50-------0.50---0.50-----0.50--------------------------------------------------0.500.500.50---0.50--------0.50------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCGCTT...................................... 1912.000.00-------1.001.001.001.00----------1.00---1.00--1.00---------------------------------------1.00----1.00----------------1.00--1.00--------1.00--------------------------------------------------------------------
..................................................................................................................................................................GCCGGGTGCTGTAGG.......................................... 15311.0011.00---1.33---1.000.33----0.33--------0.330.670.67---0.33---0.330.33------------------0.67-0.33-0.67-0.33--1.33-------0.330.67------------------------------------------------------------------------------------------0.33-0.33-----0.33-
..................................................................................................................................................................CCTACAGCACCCGGCCTTA...................................... 1910.000.00-----0.33--0.33-----0.67------0.33---0.67-0.33---0.67------0.330.67-------1.00-----0.33--0.330.67-0.670.33----------------------------------------------------------0.33-0.33----------------------------------0.33-0.33-0.33-----0.33-0.33--
................................................................................................................................................................CGGGTGCTGTAGGGT............................................ 1524.504.50---0.50----0.50----------------0.50--0.50--------0.50--------------0.50--------------0.50------------------------------------------------------------------0.50-------------0.50----------------------
................................................................................................................................................................ACCCTACAGCACCCGGTA......................................... 184.000.00-----------------------0.50------0.50----------------------------------0.50----------------------------------------------------0.50---------0.50----------0.50-0.50-------0.50---------------------
..................................................................................................................................................................CCTACAGCACCCGGCCTA....................................... 183.670.00---0.67-----0.33--------------0.33------1.00--------------------0.33--0.33-------------------------------------------------------------------------------------------------------0.33--0.33--------
..................................................................................................................................................................CCTACAGCACCCGGCGCTTT..................................... 203.000.00------------------------1.00------------1.001.00------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................CCGGGTGCTGTAGGGT........................................... 1622.002.00----------0.50---------------------------------0.50-------------------------------------------------------------------------------------------0.50-----------------0.50----------------
..................................................................................................................................................................CCTACAGCACCCGGCGC........................................ 172.000.00-------1.00-------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCGCT....................................... 182.000.00--------------------------------1.00---------------------------------------------1.00--------------------------------------------------------------------------------------------
.......................CAGCAGTCCAGTCCATGTG................................................................................................................................................................................. 192.000.00------------------------------------------------------------------------1.00------------------------------1.00-------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCGCTTA..................................... 202.000.00--------1.00-----1.00------------------------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CCGGGTGCTGTAGGG........................................... 1531.331.33--------0.33-----------------------------------------------0.33-0.33-----------0.33----------------------------------------------------------------------------------------------------
.......................CAGCAGTCCAGTCCATGGC................................................................................................................................................................................. 191.000.00------------------------------------------------------------------------------------------------------------1.00--------------------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGTA.......................................... 171.000.00--------------0.50-----------------------------0.50------------------------------------------------------------------------------------------------------------------------------
................................................AGGTATGCAGAGGGGCCGGGGACCCC................................................................................................................................................. 261.000.00-----------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCCT....................................... 181.000.00---------------------------------------0.33-------------------0.33------------------------------------------------------------0.33--------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGGCT......................................... 181.000.00-------------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCGACTT..................................... 201.000.00---------------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCTTC...................................... 191.000.00---0.33---------------------0.33---------------------------------0.33---------------------------------------------------------------------------------------------------------------
.................................................................................................................................................GTAGGGTGGAAGGGCAGATGGT.................................................... 2211.001.00-----1.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------
........................................................................CTCGAGTGCTTTCTTAAC................................................................................................................................. 181.000.00------------------------------------------------------------1.00--------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................TCGCCGGGTGCTGTA........................................ 1511.001.00---------------------------1.00-----------------------------------------------------------------------------------------------------------------------------------------------
.........................................................CTCGAGCATCCCCGGCCCCTC............................................................................................................................................. 2111.001.00-----------------1.00---------------------------------------------------------------------------------------------------------------------------------------------------------
.........................................................................................................................................................................GTGTCCTGTCGCCGGGTG................................ 1811.001.00--------------------------------------------------------------------------------------------------------------1.00------------------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGGTTA........................................ 191.000.00-----------0.50------------------0.50--------------------------------------------------------------------------------------------------------------------------------------------
....................................................................................................................................................................................................CTCTGAGTGGGCGCTGAGGTG.. 2111.001.00----------------------------------------------------------------------------------------------------1.00----------------------------------------------------------------------
...............................................AAGGTATGCAGAGGGGCCGGGGATGCTCCC.............................................................................................................................................. 301.000.00-------------------------------------------------------------------------------------------------1.00-------------------------------------------------------------------------
.......................CAGCAGTCCAGTCCATGT.................................................................................................................................................................................. 181.000.00-----------------------------------------------------------------------------------------------------------1.00---------------------------------------------------------------
..............................................................................................................................................................CCACCCTACAGCACCTAGT.......................................... 191.000.00-------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCTTG...................................... 191.000.00---0.33---------------------0.67-------------------------------------------------------------------------------------------------------------------------------------------------
..............................................................................................................................................................CCACCCTACAGCACCTAG........................................... 181.000.00-------------------------------------------------1.00-------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................CTGTAGGGTGGAAGGGCAGATGG.................................................. 2311.001.00----------------------------------------------------------------1.00----------------------------------------------------------------------------------------------------------
.......................CAGCAGTCCAGTCCAGTGTG................................................................................................................................................................................ 201.000.00--------------------------------------------------------------1.00------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCA........................................ 171.000.00---1.00-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
.....................................................TGCAGAGGGGCCGGGGACA................................................................................................................................................... 191.000.00------------------1.00--------------------------------------------------------------------------------------------------------------------------------------------------------
.........................TGCCCTGGACTGGACTGC................................................................................................................................................................................ 1811.001.00-----------------------------------------------------------------------1.00---------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCTG....................................... 180.670.00---------------------------------------0.33-------------------------------------------------------------------------------------------------------------------------------0.33---
..................................................................................................................................................................CCTACAGCACCCGGCCTC....................................... 180.670.00-------------------------------0.33---------------------------0.33---------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCAC....................................... 180.670.00---------------------------------------0.33--------------------0.33--------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCTCT...................................... 190.670.00---0.33---------------------------------------------------------------------------------------------------------------------------------------------------------0.33-------------
..................................................................................................................................................................CCTACAGCACCCGGCCATT...................................... 190.670.00-------------------------------0.67-------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGA........................................... 160.500.00---------0.50-----------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGTGC......................................... 180.500.00-----------------------------------0.50---------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGGAT......................................... 180.500.000.50--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGGTTT........................................ 190.500.00------------------------------0.50--------------------------------------------------------------------------------------------------------------------------------------------
................................................................................................................................................................ACCCTACAGCACCCGGCT......................................... 180.500.00--------------------------------------------------------------------------0.50------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCTAA...................................... 190.330.00-------------------------------0.33-------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCC........................................ 170.330.00-------------------------0.33-------------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCCTT...................................... 190.330.00-----------------------------0.33---------------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCA......................................... 160.330.00-------------------------------------------------------------0.33-------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCTA........................................ 170.330.00-----------------------------0.33---------------------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CCCTACAGCACCCGGGA......................................... 170.330.00---------------------------------0.33-----------------------------------------------------------------------------------------------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCCGTT...................................... 190.330.00-------------------------------------------------------------------------------------------------------------------------0.33-------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCATT....................................... 180.330.00---------------------------------------0.33-----------------------------------------------------------------------------------------------------------------------------------
.................................................................................................................................................................CCCTACAGCACCCGGCTT........................................ 180.330.00---------------------------------------------------------------------------------------------------------------------------------------------------------------------0.33-----
..................................................................................................................................................................CCTACAGCACCCGGCCGT....................................... 180.330.00------------------------------------------------------------------------------------------------------------------------0.33--------------------------------------------------
..................................................................................................................................................................CCTACAGCACCCGGCTTT....................................... 180.330.00--------------------------------------------------------------------------------------------------------------------------------------------------------------------0.33------
..................................................................................................................................................................CCTACAGCACCCGGCATTT...................................... 190.330.00---------------------------------------0.33-----------------------------------------------------------------------------------------------------------------------------------
...............................................................................................................................................................GGGTGCTGTAGGGTG............................................. 1580.120.12----------------------------------------------------------------------0.12----------------------------------------------------------------------------------------------------
..AGGGGCGTGGAGGGA.......................................................................................................................................................................................................... 1590.110.11--------------------------------------------------------------------------------------------------------------------------------------------------------------------------0.11