ID: uc001sac.2_intron_2_0_chr12_52681107_r.3p
GENE: (2)
chr12:52681057-52681306-


(1)
AGO2.ip 		(7)
BREAST 		(11)
CELL-LINE 		(4)
CERVIX 		(1)
HEART 		(2)
OTHER 		(1)
RRP40.ip 		(5)
SKIN 		(1)
XRN.ip

Sense strand
CCTGGATCTCAGCATTCATTCTCCACCCCCTTTGTCCATGTAGAGTCCCTGGTCGTGGTCTCTCAATGAGTCCCAGGTGATAAAGGCAAGAGGCTCTGTTCTGGGGTGCTCCCAGCTTGGTGGGGAGTGTGGTCTCATTTGGATGAGCATCAGAGAGACCCAGGGACTCTAATCTACCTTGTTCTTTCTGTTCTCTTCAGAACTCCAAGCTGGAGGCCGCGGTGGCCCAGTCTGAGCAGCAGGGTGAGGC
...........................................................................................................................................((((.(((...((((((((..(((((...........))))).))))))))..)))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029127(GSM416756)
A549. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR189784SRR040029(GSM532914)
G026T. (cervix)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCAG..................................................22226.5026.5017.006.50--3.00-------------------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACC..........................................................................................22112.0012.005.005.00--------------1.00-----1.00-------
..........................................................................................................................................TTGGATGAGCATCAGAGAGAC...........................................................................................2118.008.003.00-2.001.00-------1.00---------1.00--------
...........................................................................................................................................TGGATGAGCATCAGAGAGACC..........................................................................................2117.007.001.001.001.00--3.00------------------1.00-----
.........................................................................................................................................TTTGGATGAGCATCAGAGAGAC...........................................................................................2217.007.002.003.001.00-1.00-------------------------
..................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCAGA.................................................2315.005.003.002.00----------------------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCCAT.......................................................................................2514.001.002.00--2.00--------------------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCC.........................................................................................2313.003.00-2.00-1.00--------------------------
...........................................................................................................................................TGGATGAGCATCAGAGAGAC...........................................................................................2013.003.002.00-1.00---------------------------
............................................................................................................................................GGATGAGCATCAGAGAGACCCAGGGACTCTA...............................................................................3112.002.002.00-----------------------------
.........................................................................................................................................TTTGGATGAGCATCAGAGAGACCCA........................................................................................2512.002.001.00-1.00---------------------------
...........................................................................................................................................TGGATGAGCATCAGAGAGACCCA........................................................................................2312.002.00-1.00--------1.00-------------------
.........................................................................................................................................TTTGGATGAGCATCAGAGAGACC..........................................................................................2312.002.001.001.00----------------------------
...................................................................................................................................................................................TGTTCTTTCTGTTCTCTTCAG..................................................2122.002.000.500.500.50----0.50----------------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGA............................................................................................2012.002.002.00-----------------------------
..................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTC....................................................2021.501.500.501.00----------------------------
................................................................................TAAAGGCAAGAGGCTCTGTTCTG...................................................................................................................................................2311.001.001.00-----------------------------
...........................................................................................................................................TGGATGAGCATCAGAGAGACCCAGG......................................................................................2511.001.001.00-----------------------------
................................................................AATGAGTCCCAGGTGATAAAGGCAAGAGGC............................................................................................................................................................3011.001.00------------------1.00-----------
.................................GTCCATGTAGAGTCCCCA.......................................................................................................................................................................................................181.000.00------------1.00-----------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCAT........................................................................................2411.0012.00------1.00-----------------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCTAT.......................................................................................2511.0012.00--------------------1.00---------
........................................................................................................................TGGGGAGTGTGGTCTTG.................................................................................................................171.000.00-------------------1.00----------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCATT.......................................................................................2511.0012.00------1.00-----------------------
..............................................................................................................................................................................................................................TGGCCCAGTCTGAGCAGCAGGGTGAGGGG291.000.00----1.00-------------------------
..........................................................................................................................................................................................................CTCCAAGCTGGAGGCCGCGGGG..........................221.000.00-1.00----------------------------
..................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCAGG.................................................2321.0026.50-1.00----------------------------
....................................................................AGTCCCAGGTGATAAAGGCAAGAGGCTCTG........................................................................................................................................................3011.001.001.00-----------------------------
...................................................................................................................................................CATCAGAGAGACCCAGGGACTCTTA..............................................................................251.000.00---------------1.00--------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCCAGG......................................................................................2611.001.001.00-----------------------------
............................CCTTTGTCCATGTAGAGTCCCTGGG.....................................................................................................................................................................................................251.000.001.00-----------------------------
.........................................................................................................GTGCTCCCAGCTTGGTGGGGAGTGTGG......................................................................................................................2711.001.001.00-----------------------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCCT........................................................................................2411.003.00---1.00--------------------------
...................................................................................................................................................................................................................GGAGGCCGCGGTGGCCCAGC...................201.000.00-1.00----------------------------
................CATTCTCCACCCCCTGTCC.......................................................................................................................................................................................................................191.000.00-----------------1.00------------
............................................................................................................................................GGATGAGCATCAGAGAGACC..........................................................................................2011.001.00-------1.00----------------------
..........................................................................................................................................TTGGATGAGCATCAGAGAGACCCA........................................................................................2411.001.001.00-----------------------------
.........................................................................................................................................TTTGGATGAGCATCAGAGAGACCCAGG......................................................................................2711.001.001.00-----------------------------
....................................................................................................................................................................................................TCAGAACTCCAAGCTGG.....................................1711.001.001.00-----------------------------
................................................................................................................................................GAGCATCAGAGAGACCCAGGGACTCTAATC............................................................................3011.001.001.00-----------------------------
...............................................................................................................................................TGAGCATCAGAGAGACCCAGGA.....................................................................................221.000.001.00-----------------------------
................CATTCTCCACCCCCTGACA.......................................................................................................................................................................................................................191.000.00---------1.00--------------------
...................................................................................................................................................................................TGTTCTTTCTGTTCTCTTCAGA.................................................2211.001.00-1.00----------------------------
...............................................................................................................................................TGAGCATCAGAGAGACCCAGGGA....................................................................................2311.001.001.00-----------------------------
...........................................................................................................................................TGGATGAGCATCAGAGAGACCCATT......................................................................................2511.002.00---1.00--------------------------
......................................................................................................................................................................................................................................TCTGAGCAGCAGGGTGA...1760.830.83-0.67--0.17-------------------------
..................................................................................................................................................................................TTGTTCTTTCTGTTCTCTT.....................................................1920.500.50---------------------------0.50--
..................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCA...................................................2120.500.50-0.50----------------------------
............................................................................................................................................................................................................CCAAGCTGGAGGCCGCGGTG..........................2020.500.50--------------------------0.50---
......................................................................................................................................................................................................AGAACTCCAAGCTGGAGGCCGCGGT...........................2520.500.50-0.50----------------------------
.....................................................................................................................................................................................................CAGAACTCCAAGCTGGAGGCCGC..............................2320.500.500.50-----------------------------
......................................................................................................................................................................................................AGAACTCCAAGCTGGAGGCCGC..............................2220.500.50-0.50----------------------------
.......................................................................................................................................................................................................GAACTCCAAGCTGGAGGCCGCG.............................2220.500.50--0.50---------------------------
.................................................................................................................................................AGCATCAGAGAGACCCAGGGACTCT................................................................................2520.500.50-0.50----------------------------
.......................................................................................................................................................AGAGAGACCCAGGGACTCT................................................................................1930.330.330.33-----------------------------
................................TGTCCATGTAGAGTCCCTGG......................................................................................................................................................................................................2030.330.33----0.33-------------------------
..............................................................................GATAAAGGCAAGAGGC............................................................................................................................................................1630.330.330.33-----------------------------
.......................................................................................................................................................................................................................GCCGCGGTGGCCCAG....................1540.250.25----------------------------0.25-
......................................................................................................................................................................................................................................TCTGAGCAGCAGGGTGAGGC2050.200.200.20-----------------------------
..................................................................................................................................................................................................................................CCAGTCTGAGCAGCAGGG......1860.170.17-----------------------------0.17
......................................................................................................................................................................................................................................TCTGAGCAGCAGGGTGAGG.1960.170.17----0.17-------------------------
.......................................................................................................................................................................................................................................CTGAGCAGCAGGGTGA...1680.120.12-0.12----------------------------
...................................................................................................................................................................................................................................CAGTCTGAGCAGCAGGG......1790.110.11----0.11-------------------------

Antisense strand
CCTGGATCTCAGCATTCATTCTCCACCCCCTTTGTCCATGTAGAGTCCCTGGTCGTGGTCTCTCAATGAGTCCCAGGTGATAAAGGCAAGAGGCTCTGTTCTGGGGTGCTCCCAGCTTGGTGGGGAGTGTGGTCTCATTTGGATGAGCATCAGAGAGACCCAGGGACTCTAATCTACCTTGTTCTTTCTGTTCTCTTCAGAACTCCAAGCTGGAGGCCGCGGTGGCCCAGTCTGAGCAGCAGGGTGAGGC
...........................................................................................................................................((((.(((...((((((((..(((((...........))))).))))))))..)))))))...................................................
.....................................................................................................................................134...............................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029127(GSM416756)
A549. (cell line)		TAX577740(Rovira)
total RNA. (breast)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR189784SRR040029(GSM532914)
G026T. (cervix)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.......................................................................................................................................................................TCTAATCTACCTTGTTACA................................................................ 191.000.00-------------1.00----------------
.................................................................................................GTTCTGGGGTGCTCCCATTTG.................................................................................................................................... 211.000.00--------1.00---------------------
.........................................................................................GAGGCTCTGTTCTGGGGG............................................................................................................................................... 181.000.00-----------------------1.00------
................CATTCTCCACCCCCTGAA........................................................................................................................................................................................................................ 181.000.00--------------1.00---------------
............................................................................................................................................................AGATTAGAGTCCCTGGGTC........................................................................... 1920.500.50-------------------------0.50----
..................................................................................................................................CATCCAAATGAGACC......................................................................................................... 1560.170.17-------------------------0.17----