ID: uc001sab.2_intron_2_0_chr12_52681107_r
GENE: (6)
chr12:52681057-52681429-


(1)
AGO2.ip 		(9)
BREAST 		(11)
CELL-LINE 		(5)
CERVIX 		(1)
HEART 		(2)
OTHER 		(1)
RRP40.ip 		(7)
SKIN 		(1)
XRN.ip

Sense strand
ACCGCATGATCCAAAGGCTGACGGCCGAGGTGGAGAATGCCAAGTGCCAGGTATGGGGCATCTGTGCGCAAGGTCAGAGAGACCGAGGGCCTAACCATTGTCACACAGCCTATGTGTGCCCTACCTGGATCTCAGCATTCATTCTCCACCCCCTTTGTCCATGTAGAGTCCCTGGTCGTGGTCTCTCAATGAGTCCCAGGTGATAAAGGCAAGAGGCTCTGTTCTGGGGTGCTCCCAGCTTGGTGGGGAGTGTGGTCTCATTTGGATGAGCATCAGAGAGACCCAGGGACTCTAATCTACCTTGTTCTTTCTGTTCTCTTCAGAACTCCAAGCTGGAGGCCGCGGTGGCCCAGTCTGAGCAGCAGGGTGAGGC
......................................................................................................................................................................................................................................................................((((.(((...((((((((..(((((...........))))).))))))))..)))))))...................................................
................................................................................................................................................................................................................................................................257...............................................................323................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029127(GSM416756)
A549. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577740(Rovira)
total RNA. (breast)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
.............................................................................................................................................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCAG..................................................22226.5026.5017.006.50--3.00------------------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACC..........................................................................................22112.0012.005.005.00-----------------1.00------1.00--------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGAC...........................................................................................2118.008.003.00-2.001.00----------1.00----------1.00---------
......................................................................................................................................................................................................................................................................TGGATGAGCATCAGAGAGACC..........................................................................................2117.007.001.001.001.00--3.00-----------------------1.00-----
....................................................................................................................................................................................................................................................................TTTGGATGAGCATCAGAGAGAC...........................................................................................2217.007.002.003.001.00-1.00------------------------------
.............................................................................................................................................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCAGA.................................................2315.005.003.002.00---------------------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCCAT.......................................................................................2514.001.002.00--2.00-------------------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCC.........................................................................................2313.003.00-2.00-1.00-------------------------------
......................................................................................................................................................................................................................................................................TGGATGAGCATCAGAGAGAC...........................................................................................2013.003.002.00-1.00--------------------------------
.................CTGACGGCCGAGGTGGAGAATGCCAAGTGC......................................................................................................................................................................................................................................................................................................................................3012.002.00------2.00----------------------------
.......................................................................................................................................................................................................................................................................GGATGAGCATCAGAGAGACCCAGGGACTCTA...............................................................................3112.002.002.00----------------------------------
....................................................................................................................................................................................................................................................................TTTGGATGAGCATCAGAGAGACCCA........................................................................................2512.002.001.00-1.00--------------------------------
......................................................................................................................................................................................................................................................................TGGATGAGCATCAGAGAGACCCA........................................................................................2312.002.00-1.00-----------1.00---------------------
....................................................................................................................................................................................................................................................................TTTGGATGAGCATCAGAGAGACC..........................................................................................2312.002.001.001.00---------------------------------
..............................................................................................................................................................................................................................................................................................................TGTTCTTTCTGTTCTCTTCAG..................................................2122.002.000.500.500.50-----0.50--------------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGA............................................................................................2012.002.002.00----------------------------------
.............................................................................................................................................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTC....................................................2021.501.500.501.00---------------------------------
...........................................................................................................................................................................................................TAAAGGCAAGAGGCTCTGTTCTG...................................................................................................................................................2311.001.001.00----------------------------------
......................................................................................................................................................................................................................................................................TGGATGAGCATCAGAGAGACCCAGG......................................................................................2511.001.001.00----------------------------------
...........................................................................................................................................................................................AATGAGTCCCAGGTGATAAAGGCAAGAGGC............................................................................................................................................................3011.001.00---------------------1.00-------------
........................................................................GTCAGAGAGACCGAGCGGT..........................................................................................................................................................................................................................................................................................191.000.00---------------------------1.00-------
............................................................................................................................................................GTCCATGTAGAGTCCCCA.......................................................................................................................................................................................................181.000.00---------------1.00-------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCAT........................................................................................2411.0012.00-------1.00---------------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCTAT.......................................................................................2511.0012.00------------------------1.00----------
...................................................................................................................................................................................................................................................TGGGGAGTGTGGTCTTG.................................................................................................................171.000.00-----------------------1.00-----------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCATT.......................................................................................2511.0012.00-------1.00---------------------------
.........................................................................................................................................................................................................................................................................................................................................................TGGCCCAGTCTGAGCAGCAGGGTGAGGGG291.000.00----1.00------------------------------
.....................................................................................................................................................................................................................................................................................................................................CTCCAAGCTGGAGGCCGCGGGG..........................221.000.00-1.00---------------------------------
.............................................................................................................................................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCAGG.................................................2321.0026.50-1.00---------------------------------
...............................................................................................................................................................................................AGTCCCAGGTGATAAAGGCAAGAGGCTCTG........................................................................................................................................................3011.001.001.00----------------------------------
..............................................................................................................................................................................................................................................................................CATCAGAGAGACCCAGGGACTCTTA..............................................................................251.000.00------------------1.00----------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCCAGG......................................................................................2611.001.001.00----------------------------------
..CGCATGATCCAAAGGCTGAC...............................................................................................................................................................................................................................................................................................................................................................2011.001.00-1.00---------------------------------
.......................................................................................................................................................CCTTTGTCCATGTAGAGTCCCTGGG.....................................................................................................................................................................................................251.000.001.00----------------------------------
....................................................................................................................................................................................................................................GTGCTCCCAGCTTGGTGGGGAGTGTGG......................................................................................................................2711.001.001.00----------------------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCCT........................................................................................2411.003.00---1.00-------------------------------
..............................................................................................................................................................................................................................................................................................................................................GGAGGCCGCGGTGGCCCAGC...................201.000.00-1.00---------------------------------
...........................................................................................................................................CATTCTCCACCCCCTGTCC.......................................................................................................................................................................................................................191.000.00--------------------1.00--------------
.......................................................................................................................................................................................................................................................................GGATGAGCATCAGAGAGACC..........................................................................................2011.001.00--------1.00--------------------------
............................................................................................AACCATTGTCACACACG........................................................................................................................................................................................................................................................................171.000.00----------------------1.00------------
...GCATGATCCAAAGGCTGACGG.............................................................................................................................................................................................................................................................................................................................................................2111.001.00-1.00---------------------------------
.....................................................................................................................................................................................................................................................................TTGGATGAGCATCAGAGAGACCCA........................................................................................2411.001.001.00----------------------------------
....................................................................................................................................................................................................................................................................TTTGGATGAGCATCAGAGAGACCCAGG......................................................................................2711.001.001.00----------------------------------
.............................................................................AGAGACCGAGGGCCTTCT......................................................................................................................................................................................................................................................................................181.000.00-----------1.00-----------------------
...............................................................................................................................................................................................................................................................................................................................TCAGAACTCCAAGCTGG.....................................1711.001.001.00----------------------------------
...........................................................................................................................................................................................................................................................................GAGCATCAGAGAGACCCAGGGACTCTAATC............................................................................3011.001.001.00----------------------------------
..........................................................................................................................................................................................................................................................................TGAGCATCAGAGAGACCCAGGA.....................................................................................221.000.001.00----------------------------------
...........................................................................................................................................CATTCTCCACCCCCTGACA.......................................................................................................................................................................................................................191.000.00------------1.00----------------------
..............................................................................................................................................................................................................................................................................................................TGTTCTTTCTGTTCTCTTCAGA.................................................2211.001.00-1.00---------------------------------
..................................................GTATGGGGCATCTGTGCGCAAG.............................................................................................................................................................................................................................................................................................................2211.001.001.00----------------------------------
..........................................................................................................................................................................................................................................................................TGAGCATCAGAGAGACCCAGGGA....................................................................................2311.001.001.00----------------------------------
......................................................................................................................................................................................................................................................................TGGATGAGCATCAGAGAGACCCATT......................................................................................2511.002.00---1.00-------------------------------
......................GGCCGAGGTGGAGAAGGG.............................................................................................................................................................................................................................................................................................................................................181.000.00----------1.00------------------------
.................................................................................................................................................................................................................................................................................................................................................................TCTGAGCAGCAGGGTGA...1760.830.83-0.67--0.17------------------------------
.............................................................................................................................................................................................................................................................................................................TTGTTCTTTCTGTTCTCTT.....................................................1920.500.50-------------------------------0.50---
.............................................................................................................................................................................................................................................................................................................TTGTTCTTTCTGTTCTCTTCA...................................................2120.500.50-0.50---------------------------------
.......................................................................................................................................................................................................................................................................................................................................CCAAGCTGGAGGCCGCGGTG..........................2020.500.50------0.50----------------------------
.................................................................................................................................................................................................................................................................................................................................AGAACTCCAAGCTGGAGGCCGCGGT...........................2520.500.50-0.50---------------------------------
................................................................................................................................................................................................................................................................................................................................CAGAACTCCAAGCTGGAGGCCGC..............................2320.500.500.50----------------------------------
.................................................................................................................................................................................................................................................................................................................................AGAACTCCAAGCTGGAGGCCGC..............................2220.500.50-0.50---------------------------------
..................................................................................................................................................................................................................................................................................................................................GAACTCCAAGCTGGAGGCCGCG.............................2220.500.50--0.50--------------------------------
............................................................................................................................................................................................................................................................................AGCATCAGAGAGACCCAGGGACTCT................................................................................2520.500.50-0.50---------------------------------
..................................................................................................................................................................................................................................................................................AGAGAGACCCAGGGACTCT................................................................................1930.330.330.33----------------------------------
...........................................................................................................................................................TGTCCATGTAGAGTCCCTGG......................................................................................................................................................................................................2030.330.33----0.33------------------------------
.........................................................................................................................................................................................................GATAAAGGCAAGAGGC............................................................................................................................................................1630.330.330.33----------------------------------
..................................................................................................................................................................................................................................................................................................................................................GCCGCGGTGGCCCAG....................1540.250.25---------------------------------0.25-
.................................................................................................................................................................................................................................................................................................................................................................TCTGAGCAGCAGGGTGAGGC2050.200.200.20----------------------------------
.............................................................................................................................................................................................................................................................................................................................................................CCAGTCTGAGCAGCAGGG......1860.170.17----------------------------------0.17
.................................................................................................................................................................................................................................................................................................................................................................TCTGAGCAGCAGGGTGAGG.1960.170.17----0.17------------------------------
..................................................................................................................................................................................................................................................................................................................................................................CTGAGCAGCAGGGTGA...1680.120.12-0.12---------------------------------
..............................................................................................................................................................................................................................................................................................................................................................CAGTCTGAGCAGCAGGG......1790.110.11----0.11------------------------------

Antisense strand
ACCGCATGATCCAAAGGCTGACGGCCGAGGTGGAGAATGCCAAGTGCCAGGTATGGGGCATCTGTGCGCAAGGTCAGAGAGACCGAGGGCCTAACCATTGTCACACAGCCTATGTGTGCCCTACCTGGATCTCAGCATTCATTCTCCACCCCCTTTGTCCATGTAGAGTCCCTGGTCGTGGTCTCTCAATGAGTCCCAGGTGATAAAGGCAAGAGGCTCTGTTCTGGGGTGCTCCCAGCTTGGTGGGGAGTGTGGTCTCATTTGGATGAGCATCAGAGAGACCCAGGGACTCTAATCTACCTTGTTCTTTCTGTTCTCTTCAGAACTCCAAGCTGGAGGCCGCGGTGGCCCAGTCTGAGCAGCAGGGTGAGGC
......................................................................................................................................................................................................................................................................((((.(((...((((((((..(((((...........))))).))))))))..)))))))...................................................
................................................................................................................................................................................................................................................................257...............................................................323................................................
SizePerfect hitTotal NormPerfect NormSRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		TAX577739(Rovira)
total RNA. (breast)		SRR326281(GSM769511)
"Dicer mRNA was knocked down using siDicer, c. (cell line)		SRR029127(GSM416756)
A549. (cell line)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		TAX577740(Rovira)
total RNA. (breast)		SRR191438(GSM715548)
175genomic small RNA (size selected RNA from . (breast)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR040030(GSM532915)
G013N. (cervix)		SRR040029(GSM532914)
G026T. (cervix)		SRR191599(GSM715709)
89genomic small RNA (size selected RNA from t. (breast)		SRR040011(GSM532896)
G529T. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR189782SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR330877(SRX091715)
tissue: skin psoriatic involveddisease state:. (skin)		SRR040032(GSM532917)
G603N. (cervix)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191414(GSM715524)
31genomic small RNA (size selected RNA from t. (breast)		TAX577744(Rovira)
total RNA. (breast)		SRR060169(GSM565979)
5-8F_cytoplasm. (cell line)		GSM532886(GSM532886)
G850T. (cervix)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		TAX577743(Rovira)
total RNA. (breast)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR029125(GSM416754)
U2OS. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191622(GSM715732)
175genomic small RNA (size selected RNA from . (breast)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)
..................................................................................................................................................................................................................................................................................................TCTAATCTACCTTGTTACA................................................................ 191.000.00----------------1.00------------------
............................................................................................................................................................................................................................GTTCTGGGGTGCTCCCATTTG.................................................................................................................................... 211.000.00---------1.00-------------------------
....................................................................................................................................................................................................................GAGGCTCTGTTCTGGGGG............................................................................................................................................... 181.000.00----------------------------1.00------
...........................................................................................................................................CATTCTCCACCCCCTGAA........................................................................................................................................................................................................................ 181.000.00-----------------1.00-----------------
.......................................................................................................................................................................................................................................................................................AGATTAGAGTCCCTGGGTC........................................................................... 1920.500.50------------------------------0.50----
......................................................................................................................GAGATCCAGGTAGGG................................................................................................................................................................................................................................................ 1550.400.40--------------------------------0.40--
.............................................................................................................................................................................................................................................................CATCCAAATGAGACC......................................................................................................... 1560.170.17------------------------------0.17----