ID: uc001saa.1_intron_5_0_chr12_52636922_f.3p
GENE: KRT7(6)
chr12:52638996-52639245+


(1)
AGO2.ip 		(2)
B-CELL 		(8)
BRAIN 		(15)
BREAST 		(9)
CELL-LINE 		(6)
CERVIX 		(7)
HELA 		(4)
LIVER 		(1)
OTHER 		(1)
RRP40.ip 		(3)
SKIN 		(1)
UTERUS 		(1)
XRN.ip

Sense strand
AAGTGGCAGAGCCAGAACTGGAACATAGGCGTTGGATATCCAAACCTATGTGTTTAACCCTTAGGATTCTCTGGTACTTGGGGGAGTAGGTGGTGCCAATGAAGCCACCTTAAGCAAGTTGCCCGGGTGCTCACTGCAGGATGGGCAGGCAGGAAGGCAGACTGGTGAGCCCCAGCTTACAGCTGCACTGCTGCCCACAGCGTGCCAAGTTGGAGGCCGCCATTGCCGAGGCTGAGGAGCGTGGGGAGCT
.........................................................................(((((((((.(((((((((((.........)))))))...))...)).)))))))))............((((..((....((.....)).))..))))..............................................................................
.........................................................................74................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
............................................................................................................................................ATGGGCAGGCAGGAAGGCAGACTGGTGAGCCCCAGCTTACAGCTGCACTGCTGCCCACAG..................................................6018.008.00---8.00------------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTATAG........................................................................................................................................................207.000.005.00----------------1.00---------------------1.00------------------
..............................................................................TGGGGGAGTAGGTGGTGTGGT.......................................................................................................................................................215.000.00---------1.00----------1.00---------------------1.001.00-----1.00--------
............................................................................................................................................ATGGGCAGGCAGGAAGGCAGACTGGTGAGCCCCAGCTTACAGCTGCACTGCTGCCCACA...................................................5914.004.00------4.00---------------------------------------------------
.........................................................................GTACTTGGGGGAGTAGGT...............................................................................................................................................................1813.003.00-3.00--------------------------------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGGTGA..................................................................................2313.003.00----------------1.00-1.00-------------------------------------1.00-
.....................................................................................................................................CTGCAGGATGGGCAGGCAGGAAGG.............................................................................................2413.003.00--3.00-------------------------------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGGTGAT.................................................................................2413.003.00----3.00-----------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGTAGT.......................................................................................................................................................212.000.00----------------------------------------------1.001.00----------
............................GCGTTGGATATCCAAACCTATGTG......................................................................................................................................................................................................2412.002.00-2.00--------------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGTGG........................................................................................................................................................202.000.00---------1.00------------------------------------------1.00-----
..................................................................................................................................................................................ACAGCTGCACTGCTGCCCACAGT.................................................232.000.00------------------1.00----------------1.00----------------------
....................................................................................................................................................GCAGGAAGGCAGACTGGTG...................................................................................1912.002.00-----2.00----------------------------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGG.....................................................................................2021.501.50--------0.50-----------------------1.00-------------------------
.AGTGGCAGAGCCAGAACTGG.....................................................................................................................................................................................................................................2031.331.33-----1.33----------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGCTCG.......................................................................................................................................................211.000.00----------------------1.00-----------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGGTG...................................................................................2211.001.00--------1.00-------------------------------------------------
.........................................................................................................................................................AAGGCAGACTGGTGAGCCC..............................................................................1911.001.00-1.00--------------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGGCGT.......................................................................................................................................................211.000.00--------------------------------------------------1.00-------
..............................................................................TGGGGGAGTAGGTGGTGCGGTT......................................................................................................................................................221.000.00---------------------1.00------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGCAGTT......................................................................................................................................................221.000.00-------------1.00--------------------------------------------
..............................................................................TGGGGGAGTAGGTGGAG...........................................................................................................................................................171.000.00---------------------1.00------------------------------------
..................................................................................................................................TCACTGCAGGATGGGCCCG.....................................................................................................191.000.00--------------------------------------------1.00-------------
................................................................................................................................................GCAGGCAGGAAGGCAGACTGGGGA..................................................................................241.000.00----1.00-----------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTAAA.........................................................................................................................................................191.000.00-----------------1.00----------------------------------------
.............................................................................................................................................................................................................................ATTGCCGAGGCTGAGGAGCG.........2011.001.00--1.00-------------------------------------------------------
..................TGGAACATAGGCGTTGGATAT...................................................................................................................................................................................................................2111.001.00-------1.00--------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGTAG........................................................................................................................................................201.000.001.00---------------------------------------------------------
..................................................................................................................................................AGGCAGGAAGGCAGACTGGTGAGCCC..............................................................................2611.001.00-----------------------------------------1.00----------------
..............................................................................TGGGGGAGTAGGTGGTGGTT........................................................................................................................................................201.000.00------------------------------------------------1.00---------
..............................................................................TGGGGGAGTAGGTGGTGGAG........................................................................................................................................................201.000.001.00---------------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGGGG........................................................................................................................................................201.000.00--1.00-------------------------------------------------------
..................................................................................................................................................AGGCAGGAAGGCAGACTGGT....................................................................................2011.001.00--------------------------1.00-------------------------------
..............................................................................TGGGGGAGTAGGTGGTGT..........................................................................................................................................................181.000.00----------1.00-----------------------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGGT....................................................................................2111.001.00----------------1.00-----------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGTAAT.......................................................................................................................................................211.000.00-----------1.00----------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTACAG........................................................................................................................................................201.000.001.00---------------------------------------------------------
..................................................................................................................................TCACTGCAGGATGGGCAGGCAGGAAG..............................................................................................2611.001.00--1.00-------------------------------------------------------
.........AGCCAGAACTGGAACATAGGCGT..........................................................................................................................................................................................................................2311.001.00-1.00--------------------------------------------------------
......................................................................................................................................................................................................................GGCCGCCATTGCCGAGGCTGAG..............2211.001.00---------------------------------1.00------------------------
..........GCCAGAACTGGAACATAGGC............................................................................................................................................................................................................................2011.001.00-------1.00--------------------------------------------------
................................................................................................................................................................................TTACAGCTGCACTGCTGCCCACA...................................................2311.001.00----------------------------------------1.00-----------------
..............................................................................TGGGGGAGTAGGTGGTGCAGT.......................................................................................................................................................211.000.00--------------1.00-------------------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGGTAA..................................................................................2311.001.00----1.00-----------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTAG..........................................................................................................................................................181.000.00----------1.00-----------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGCTGGT......................................................................................................................................................221.000.00---------------------------------------------1.00------------
..........................................................................................................................................GGATGGGCAGGCAGGAAGGC............................................................................................2011.001.00-----------------------------------------------------1.00----
..............................................................................TGGGGGAGTAGGTGGTCT..........................................................................................................................................................181.000.00------------1.00---------------------------------------------
................................................................................................................................................GCAGGCAGGAAGGCAGACTGGTG...................................................................................2311.001.00--------1.00-------------------------------------------------
........................................................................................................................................................................................................................CCGCCATTGCCGAGGGTCG...............191.000.00------------------------------------1.00---------------------
..........GCCAGAACTGGAACATAGGCGT..........................................................................................................................................................................................................................2211.001.00-1.00--------------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTAGAG........................................................................................................................................................201.000.001.00---------------------------------------------------------
......................................................................................................................................TGCAGGATGGGCAGGCT...................................................................................................171.000.00-------------------------------------------------------1.00--
..............................................................................TGGGGGAGTAGGTGGTGGGGT.......................................................................................................................................................211.000.00--------------------1.00-------------------------------------
.............................................................................................................................................................................................................................ATTGCCGAGGCTGAGGAGC..........1911.001.00----------------------------1.00-----------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGGTGAAT................................................................................2511.003.00-------------------1.00--------------------------------------
.............................................................................................................................GGTGCTCACTGCAGGATGGGCAGGCAGGAAGGCAGACTGGTGAGCCCCAGCTTACAGCTGCAC..............................................................6311.001.00------------------------------------------------------1.00---
.....GCAGAGCCAGAACTGGAACATAGGCGTT.........................................................................................................................................................................................................................2811.001.00-------------------1.00--------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGCGGTC......................................................................................................................................................221.000.00-------------------------------1.00--------------------------
..........................................................................................................................................................................................................................................AGGAGCGTGGGGAGCAGG181.000.00---------------------------1.00------------------------------
..............................................................................TGGGGGAGTAGGTGGTC...........................................................................................................................................................171.000.00-------------1.00--------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGTGTT.......................................................................................................................................................211.000.00-------------------------1.00--------------------------------
..............................................................................TGGGGGAGTAGGTGGTGCAGAT......................................................................................................................................................221.000.00--------------1.00-------------------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACTGGTGT..................................................................................2311.001.00-----------1.00----------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTATGG........................................................................................................................................................201.000.001.00---------------------------------------------------------
....................................................................................................................................ACTGCAGGATGGGCACTTC...................................................................................................191.000.00-------------------------------------1.00--------------------
..........................AGGCGTTGGATATCCAAACCTATGTGTTTAACCCTTAGGATTCTCTGGTACTTGGGGGAGTA..................................................................................................................................................................6211.001.00----------------------------------1.00-----------------------
..............................................................................TGGGGGAGTAGGTGGTCTAG........................................................................................................................................................201.000.00------------1.00---------------------------------------------
.........................................................CCCTTAGGATTCTCTGG................................................................................................................................................................................1711.001.00--1.00-------------------------------------------------------
..............................................................................TGGGGGAGTAGGTGGATAG.........................................................................................................................................................191.000.001.00---------------------------------------------------------
.....................................................................................................................................CTGCAGGATGGGCAGGCAGGAAGGCAGACTGG.....................................................................................3211.001.00--1.00-------------------------------------------------------
.......................................................................................................................................................................................................................GCCGCCATTGCCGAGGCTGAG..............2111.001.00-----1.00----------------------------------------------------
...........CCAGAACTGGAACATAGGCG...........................................................................................................................................................................................................................2011.001.00-----------------------------1.00----------------------------
..............................................................................TGGGGGAGTAGGTGGTATAC........................................................................................................................................................201.000.00---------------------------------------------------1.00------
...........................GGCGTTGGATATCCAAACC............................................................................................................................................................................................................1911.001.00-1.00--------------------------------------------------------
..................TGGAACATAGGCGTTGGAT.....................................................................................................................................................................................................................1911.001.00---------------1.00------------------------------------------
..............................................................................TGGGGGAGTAGGTGGTGCGGC.......................................................................................................................................................211.000.00------------------------1.00---------------------------------
....................GAACATAGGCGTTGGATA....................................................................................................................................................................................................................1811.001.00--1.00-------------------------------------------------------
.............................................................................................................................................................................................................................ATTGCCGAGGCTGAGGAG...........1811.001.00-----------------------1.00----------------------------------
..............................................................................TGGGGGAGTAGGTGGTGTCG........................................................................................................................................................201.000.00--------------------------------------1.00-------------------
...................GGAACATAGGCGTTGGAT.....................................................................................................................................................................................................................1811.001.00---------------1.00------------------------------------------
................................................................................................................................................GCAGGCAGGAAGGCAGACT.......................................................................................1930.330.33--------0.33-------------------------------------------------
.................................................................................................................................................CAGGCAGGAAGGCAGACT.......................................................................................1830.330.33---------------------------------------------------------0.33

Antisense strand
AAGTGGCAGAGCCAGAACTGGAACATAGGCGTTGGATATCCAAACCTATGTGTTTAACCCTTAGGATTCTCTGGTACTTGGGGGAGTAGGTGGTGCCAATGAAGCCACCTTAAGCAAGTTGCCCGGGTGCTCACTGCAGGATGGGCAGGCAGGAAGGCAGACTGGTGAGCCCCAGCTTACAGCTGCACTGCTGCCCACAGCGTGCCAAGTTGGAGGCCGCCATTGCCGAGGCTGAGGAGCGTGGGGAGCT
.........................................................................(((((((((.(((((((((((.........)))))))...))...)).)))))))))............((((..((....((.....)).))..))))..............................................................................
.........................................................................74................................................................................................172............................................................................
SizePerfect hitTotal NormPerfect NormSRR189782DRR001488(DRX001042)
"Hela short nuclear cell fraction, LNA(+)". (hela)		DRR001489(DRX001043)
"Hela short nuclear cell fraction, control". (hela)		DRR001486(DRX001040)
"Hela long cytoplasmic cell fraction, LNA(+)". (hela)		SRR039615(GSM531978)
Severe Chronic Hepatitis B Liver Tissue. (liver)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR029054(GSM402329)
MCF7_smallRNAseq. (cell line)		TAX577580(Rovira)
total RNA. (breast)		TAX577588(Rovira)
total RNA. (breast)		TAX577746(Rovira)
total RNA. (breast)		GSM450601(GSM450601)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450609(GSM450609)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM532874(GSM532874)
G699T. (cervix)		TAX577740(Rovira)
total RNA. (breast)		GSM450608(GSM450608)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577579(Rovira)
total RNA. (breast)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		RoviraIPAgo2(Rovira)
total RNA. (ago2 breast)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR040018(GSM532903)
G701N. (cervix)		GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR039614(GSM531977)
HBV-infected Liver Tissue. (liver)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR040028(GSM532913)
G026N. (cervix)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001484(DRX001038)
"Hela long nuclear cell fraction, control". (hela)		SRR191492(GSM715602)
154genomic small RNA (size selected RNA from . (breast)		SRR189785SRR038855(GSM458538)
D10. (cell line)		SRR040007(GSM532892)
G601T. (cervix)		TAX577741(Rovira)
total RNA. (breast)		SRR191620(GSM715730)
167genomic small RNA (size selected RNA from . (breast)		GSM359178(GSM359178)
hela_nucl_t. (hela)		SRR191634(GSM715744)
98genomic small RNA (size selected RNA from t. (breast)		TAX577742(Rovira)
total RNA. (breast)		SRR444060(SRX128908)
Sample 18cDNABarcode: AF-PP-340: ACG CTC TTC . (skin)		GSM450600(GSM450600)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		TAX577744(Rovira)
total RNA. (breast)		TAX577589(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		TAX577453(Rovira)
total RNA. (breast)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR330878(SRX091716)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001487(DRX001041)
"Hela long nuclear cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM532872(GSM532872)
G652T. (cervix)		SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)
..............................................................................................................................................................................................CTGCCCACAGCGTGCCGA.......................................... 181.000.00------------------------------1.00---------------------------
........................................................................................................................................................................AGCAGTGCAGCTGTAAGCTGGGGC.......................................................... 2411.001.00-------1.00--------------------------------------------------