ID: uc001ruu.1_intron_15_0_chr12_50047658_r
GENE: FMNL3(7)
chr12:50047608-50048024-


(5)
B-CELL 		(1)
BRAIN 		(1)
BREAST 		(19)
CELL-LINE 		(8)
CERVIX 		(1)
FIBROBLAST 		(2)
HEART 		(3)
HELA 		(1)
KIDNEY 		(5)
LIVER 		(1)
OTHER 		(2)
RRP40.ip 		(8)
SKIN 		(1)
TESTES 		(4)
UTERUS 		(1)
XRN.ip

Sense strand
TCCACCTGCAGTATGAGTTTACCAAGCTGGGGCTAGAGGAGTTCCTGCAGGTGAGCTGGCTGGGGTCCTTGTAAGGTGAGGTGCTTTGGGATCAGTTTAGCCGTATCACAAATGATTTTTCTTTTATAAGTGCCTAATCCTTGATGCTCCTGGGACCCTGCCTGTCTTCTGTAGCCTGGGACTCAGGACCTCTGCAGCTAACTCCCCAGTCAGGCAGCTCCATGGGGGCGAGAATCTGACATGGCCTGCAGCAGGAACTCTTTGGGAAGTGGTGGCGAAGGGGGATGAGGACTAAGACTTTCTCAGAAAGTTCCCCTGATGATCTGCCTGCTCCTACAACTACTCCTACTCTCTGCTCTTCCCCCAGAAGTCAAGGCACACAGAGAGCGAGAAGCTGCAGGTGCAGATTCAGGCATA
........................................................................................................................................................................((((((((((.....))))....))))))...........((((((..(((((...))))).....)))))).................................................................................................................................................................................
........................................................................................................................................................................169....................................................................240...............................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040023(GSM532908)
G575T. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		GSM1105752CONTROL(GSM1105752)
small RNA sequencing data. (hela)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		SRR343336SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029127(GSM416756)
A549. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR040032(GSM532917)
G603N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGG.....................................................................................................................................................................................18254.501.5040.506.50-1.001.501.001.00--0.500.500.50---------0.50----------------------------0.500.50-----------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAGGG....................................................................................................................................................................................18344.672.3323.678.00-5.001.332.00-1.00------2.00--0.33------------------------0.67----------0.330.33--------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAGG.....................................................................................................................................................................................17337.672.3313.6715.00-1.333.330.671.67-0.33----0.33--0.33--0.33--------------------------------0.33---0.33------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGGG....................................................................................................................................................................................19225.501.5014.00--5.001.002.50-----------0.50---0.500.50-----------------0.50---0.500.50-----------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAG......................................................................................................................................................................................17213.001.501.509.50-0.501.00-0.50--------------------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAGGGA...................................................................................................................................................................................19312.002.336.33--0.671.671.000.67---------------0.33------------------0.67-0.33-------------0.33-----
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGGGA...................................................................................................................................................................................2029.501.507.00---0.50------------1.00----------1.00----------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGA........................................................................................................................................................................................1536.336.33--------1.331.672.00-----0.67-0.33------------------------------------------0.33-
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAAAA....................................................................................................................................................................................1835.002.332.00--0.67---0.33----0.330.33------0.33-0.33-----------------------------------0.33-0.33--
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAAAA....................................................................................................................................................................................1923.501.50-----1.00-1.00----0.50-----------------------------------0.500.50-------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGA.....................................................................................................................................................................................1822.501.502.50--------------------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAAA.....................................................................................................................................................................................1822.501.50---1.00---0.50--------1.00----------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAA.......................................................................................................................................................................................1532.332.33--------0.33----1.00----0.33--0.33---------------------0.33-------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAAAAA...................................................................................................................................................................................1932.332.330.67------0.67------------1.00------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................................TCCCCCAGAAGTCAAGGC........................................1812.002.00---------------2.00-----------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGGA....................................................................................................................................................................................1921.501.501.50--------------------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAA.......................................................................................................................................................................................1621.501.50--------0.50----0.50----0.50--------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAAAAA...................................................................................................................................................................................2021.501.50------------1.50--------------------------------------------------
.........................................................................................................................................................................................................................CTCCATGGGGGCGAGAAG......................................................................................................................................................................................181.000.00-1.00-------------------------------------------------------------
.............................................................................................................................................................................GCCTGGGACTCAGGACGG..................................................................................................................................................................................................................................181.000.00-------------------------------------1.00-------------------------
.............................................................................................................................................................................................................................................................................................................................GATGATCTGCCTGCTCGGCC................................................................................201.000.00---------------------------------------1.00-----------------------
....................................AGGAGTTCCTGCAGGTGTTT.........................................................................................................................................................................................................................................................................................................................................................................201.000.00-----------------------1.00---------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAACAA...................................................................................................................................................................................1931.002.331.00--------------------------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAATGG....................................................................................................................................................................................181.000.00-1.00-------------------------------------------------------------
.......................................................................................................................................................................................CAGGACCTCTGCAGCTGTA.......................................................................................................................................................................................................................191.000.00-----------------------------------1.00---------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAACAAA...................................................................................................................................................................................1931.002.33-----0.67----------------------------------0.33----------------------
...............................................................................................................................................................................................................................................................................................................................TGATCTGCCTGCTCCTGCCT..............................................................................201.000.00-----------------------------1.00---------------------------------
...........................................................................................................................................................................................................................................................................AGTGGTGGCGAAGGGGGGGCT.................................................................................................................................211.000.00------------------------------------1.00--------------------------
................................................................................................................................................................................................................................................................................................................................................................................AGTCAAGGCACACAGAGAGCGAGAAAA......................271.000.00--------------------------------1.00------------------------------
.........................................................................................................................................................................................................................................................................................................................................................................................................GCTGCAGGTGCAGATTTTGG....201.000.00--------------------------1.00------------------------------------
.....................................................................................................................................................................CTTCTGTAGCCTGGGGGC..........................................................................................................................................................................................................................................181.000.00---------------------------1.00-----------------------------------
...........................TGGGGCTAGAGGAGTTCCTGC.................................................................................................................................................................................................................................................................................................................................................................................2111.001.00-------------------------------1.00-------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAGGA....................................................................................................................................................................................1831.002.330.330.33--0.33----------------------------------------------------------
..............................................................................................................................................................................................................................................................................GGTGGCGAAGGGGGATGAGGGGGG...........................................................................................................................241.000.00------------------------------1.00--------------------------------
.................................................................................................................................................................................................................................................................................................................................................................................GTCAAGGCACACAGAGAGCGAGAA........................2411.001.00-------------------------1.00-------------------------------------
........................AGCTGGGGCTAGAGGAGTT......................................................................................................................................................................................................................................................................................................................................................................................1911.001.00---------------------------------1.00-----------------------------
.....................................................................................................................................................................................................................................................................................................................................................................................AGGCACACAGAGAGCGAGAAGCTGCAGG................2811.001.00------------------------1.00--------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAGA.....................................................................................................................................................................................1730.672.330.33--------0.33-----------------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAACA.....................................................................................................................................................................................1730.672.330.67--------------------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGGAA...................................................................................................................................................................................2020.501.50----0.50----------------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAC......................................................................................................................................................................................1720.501.50-----0.50---------------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGGGG...................................................................................................................................................................................2020.501.50-----------------------------------------------0.50---------------
.................................TAGAGGAGTTCCTGCAG...............................................................................................................................................................................................................................................................................................................................................................................1720.500.50--------0.50------------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAAGAA....................................................................................................................................................................................1920.501.50----------------------------------------------0.50----------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAACA.....................................................................................................................................................................................1820.501.50------------------0.50--------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAACAA....................................................................................................................................................................................1830.332.33---0.33-----------------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGACG......................................................................................................................................................................................1730.336.33-0.33-------------------------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAGGTA...................................................................................................................................................................................1930.332.33----0.33----------------------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAAG.....................................................................................................................................................................................1730.332.33---0.33-----------------------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAGCGA...................................................................................................................................................................................1930.332.330.33--------------------------------------------------------------
...........................................................................................................................................................................................................................CCATGGGGGCGAGAAAA.....................................................................................................................................................................................1730.332.33---------0.33-----------------------------------------------------
..........................................................................................................................................................................................................................TCCATGGGGGCGAGAGGG.....................................................................................................................................................................................1830.336.33-----------------------------------------------------------0.33---

Antisense strand
TCCACCTGCAGTATGAGTTTACCAAGCTGGGGCTAGAGGAGTTCCTGCAGGTGAGCTGGCTGGGGTCCTTGTAAGGTGAGGTGCTTTGGGATCAGTTTAGCCGTATCACAAATGATTTTTCTTTTATAAGTGCCTAATCCTTGATGCTCCTGGGACCCTGCCTGTCTTCTGTAGCCTGGGACTCAGGACCTCTGCAGCTAACTCCCCAGTCAGGCAGCTCCATGGGGGCGAGAATCTGACATGGCCTGCAGCAGGAACTCTTTGGGAAGTGGTGGCGAAGGGGGATGAGGACTAAGACTTTCTCAGAAAGTTCCCCTGATGATCTGCCTGCTCCTACAACTACTCCTACTCTCTGCTCTTCCCCCAGAAGTCAAGGCACACAGAGAGCGAGAAGCTGCAGGTGCAGATTCAGGCATA
........................................................................................................................................................................((((((((((.....))))....))))))...........((((((..(((((...))))).....)))))).................................................................................................................................................................................
........................................................................................................................................................................169....................................................................240...............................................................................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207110(GSM721072)
Nuclear RNA. (cell line)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029124(GSM416753)
HeLa. (hela)		DRR000558(DRX000316)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		DRR000559(DRX000317)
"THP-1 whole cell RNA, no treatment". (cell line)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR029128(GSM416757)
H520. (cell line)		SRR444069(SRX128917)
Sample 26cDNABarcode: AF-PP-342: ACG CTC TTC . (skin)		SRR015362(GSM380327)
NaÌøve B Cell (Naive138). (B cell)		SRR330902(SRX091740)
tissue: skin psoriatic uninvolveddisease stat. (skin)		DRR000555(DRX000313)
"THP-1 whole cell RNA, no treatment". (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR040023(GSM532908)
G575T. (cervix)		SRR330887(SRX091725)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR039620(GSM531983)
HBV(+) Adjacent Tissue Sample 2. (liver)		SRR553572(SRX182778)
source: Frontal Cortex. (Frontal Cortex)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		SRR330906(SRX091744)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR330898(SRX091736)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR037876(GSM522374)
fibroblasts_cell_culture. (fibroblast)		SRR189782SRR191593(GSM715703)
62genomic small RNA (size selected RNA from t. (breast)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR038861(GSM458544)
MM466. (cell line)		GSM450602(GSM450602)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR040035(GSM532920)
G001T. (cervix)		SRR207118(GSM721080)
RRP40 knockdown. (RRP40 cell line)		SRR040008(GSM532893)
G727N. (cervix)		SRR033723(GSM497068)
L1236 cell line (L1236). (B cell)		SRR330876(SRX091714)
tissue: skin psoriatic involveddisease state:. (skin)		SRR444068(SRX128916)
Sample 25cDNABarcode: AF-PP-341: ACG CTC TTC . (cell line)		SRR207117(GSM721079)
Whole cell RNA. (cell line)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040037(GSM532922)
G243T. (cervix)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040014(GSM532899)
G623N. (cervix)		GSM1105752CONTROL(GSM1105752)
small RNA sequencing data. (hela)		SRR039624(GSM531987)
HBV(-) HCV(-) Adjacent Tissue Sample. (liver)		SRR094129(GSM651905)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR015359(GSM380324)
Germinal Center B cell (GC136). (B cell)		SRR040028(GSM532913)
G026N. (cervix)		SRR343336SRR094131(GSM651907)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR029127(GSM416756)
A549. (cell line)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR040032(GSM532917)
G603N. (cervix)		SRR040024(GSM532909)
G613N. (cervix)		DRR001485(DRX001039)
"Hela long total cell fraction, LNA(+)". (hela)		SRR189781(GSM714641)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
.................................................................................................................................................................................................................................................................................................................................ATCTGCCTGCTCCTAATTG............................................................................. 1912.000.00--12.00------------------------------------------------------------
.........................................................................................................................................................................................................................................................................................................................CCCTGATGATCTGCCCGTT..................................................................................... 191.000.00-------------------1.00-------------------------------------------
.................................................................................................................................................................................................................................................................................................................................ATCTGCCTGCTCCTAATAG............................................................................. 191.000.00--1.00------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................ATCTGCCTGCTCCTATTTG............................................................................. 191.000.00--1.00------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................ATCTGCCTGCTCCTAGGCG............................................................................. 191.000.00--1.00------------------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................ATCTGCCTGCTCCTAAGTC............................................................................. 191.000.00--1.00------------------------------------------------------------
........................................................................................................................................................................................................................................................................................................................GAGCAGGCAGATCATCAGGGG.................................................................................... 2111.001.00-----------1.00---------------------------------------------------
...............................................................................................................................................................................................................................................CATGGCCTGCAGCAGAACC............................................................................................................................................................... 191.000.00-----------1.00---------------------------------------------------
.................................................................................................................................................................................................................................................................................................................................ATCTGCCTGCTCCTAGTTG............................................................................. 191.000.00--1.00------------------------------------------------------------
.............................................................................................AGTTTAGCCGTATCACTA.................................................................................................................................................................................................................................................................................................................. 181.000.00----------------------------------1.00----------------------------
.................................................................................................................................................................................................................................................................................................................................ATCTGCCTGCTCCTAAGTG............................................................................. 191.000.00--1.00------------------------------------------------------------
.......................................................................................................................................................................................................................................................................................................................................................TCCTACTCTCTGCTCTCTGT...................................................... 201.000.00--------------------------------------1.00------------------------
..................................................................................................................................................................................................................................................................CCACCACTTCCCAAAGA.............................................................................................................................................. 1730.330.33-------------------------------------------------------0.33-------
.................................................................................................................................................GCAGGGTCCCAGGAGC................................................................................................................................................................................................................................................................ 1660.170.17--------------------------------------------------------------0.17
...............................................................................................................................AAGGATTAGGCACTT................................................................................................................................................................................................................................................................................... 1580.120.12--------------------------------------------------------------0.12