ID: uc001rta.3_intron_24_0_chr12_49435489_r
GENE: (29)
chr12:49435439-49435749-


(1)
AGO2.ip 		(6)
B-CELL 		(3)
BRAIN 		(5)
BREAST 		(17)
CELL-LINE 		(2)
CERVIX 		(4)
HEART 		(1)
HELA 		(9)
LIVER 		(7)
OTHER 		(17)
SKIN 		(1)
TESTES 		(2)
UTERUS 		(1)
XRN.ip

Sense strand
TCATGAAGCTCTGGAGAAAGGTTCCAGCAGCTGACAAAGCCCCCTACCTGGTGAGGCAGAAAGGAGCATGGATTAGCGTGGGAACTGAGAGGGAGGGAGGGATCTTTGGGTAATTTACCTCAGTTCTTTCCGCTCCCCACTCCTAAAGCAGCTGGGCCAGAAGGGATCTGCTTCTGGGTAGGGAGTGTGAAAACACTACAGTATGGGGGCGGGGCATGAGACCAAGCACTAGGCCCTAAGGCTGTGTCCCATATCCCTCAGCAAAAGGCCAAAGATAACCGGGCAGCTCACCGCATCAACAAGGTGCAGAA
...........................................................................................................................................................................................................((((((.(((((((..............((((....)))))))))))....))))))...................................................
..........................................................................................................................................................................................................203.......................................................261................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189786GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR040015(GSM532900)
G623T. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGCACT.................................................................................23122.0022.006.004.00-1.00------1.00-----1.00--2.00--------1.00--1.00-1.00-----1.00----------1.001.00---1.00------------------
..............AGAAAGGTTCCAGCAGCTGAC....................................................................................................................................................................................................................................................................................2114.004.00-----------2.00-----1.00--------------------------1.00-----------------------------
.................................ACAAAGCCCCCTACCTG.....................................................................................................................................................................................................................................................................1713.003.00----2.00----1.00----------------------------------------------------------------
................................................................................................................................................................................................................GCGGGGCATGAGACCAAGCACT.................................................................................2213.003.00----------1.00------------------------1.00-----------1.00--------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGCA...................................................................................2113.003.002.00----------------------------------------1.00--------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGCAC..................................................................................2213.003.001.00------1.00------------------------1.00-----------------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGCACC.................................................................................2313.003.00--3.00-----------------------------------------------------------------------
.........................................................................................................................................................................................................................................................................AGGCCAAAGATAACCGGGCAGCTCACCGCA................3012.002.00------------2.00-------------------------------------------------------------
....................................................................................................................................................................GATCTGCTTCTGGGTCGG.................................................................................................................................182.000.00----1.00--------1.00------------------------------------------------------------
..............AGAAAGGTTCCAGCAGCTGACA...................................................................................................................................................................................................................................................................................2212.002.00---------------2.00----------------------------------------------------------
....................................................................................................................................................................................................................................................................................AACCGGGCAGCTCACCGCATC..............2112.002.00-----2.00--------------------------------------------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGCAAT.................................................................................2311.003.00---1.00----------------------------------------------------------------------
......AGCTCTGGAGAAAGGTGGCT.............................................................................................................................................................................................................................................................................................201.000.00------------------1.00-------------------------------------------------------
................................................................................................................................................................................................................................................GCTGTGTCCCATATCCCTCAGT.................................................221.000.00-----------------------------1.00--------------------------------------------
..................AGGTTCCAGCAGCTGACAA..................................................................................................................................................................................................................................................................................1911.001.00--------------------------------------1.00-----------------------------------
.................................................................................................................................................................................................................................................................................GATAACCGGGCAGCTCACCGCATCAACAAGGT......3211.001.00--------1.00-----------------------------------------------------------------
.........................................................................................................................................................................................................TATGGGGGCGGGGCATGAG...........................................................................................1911.001.00--------------1.00-----------------------------------------------------------
......................................................................................................................................................GCTGGGCCAGAAGGGATCTGCT...........................................................................................................................................2211.001.00---------------------------------------------1.00----------------------------
.......................................................................................................................................................................................................................................GGCCCTAAGGCTGTGTCCCATATCCCTCAG..................................................3011.001.00---------1.00----------------------------------------------------------------
............................................................................................................................................................................................................................................................................CCAAAGATAACCGGGCAGCT.......................2011.001.00------------------------------------------------1.00-------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGCACTC................................................................................2411.0022.00--1.00-----------------------------------------------------------------------
..ATGAAGCTCTGGAGAAAGGTTCCAGC...........................................................................................................................................................................................................................................................................................2611.001.00----------------------------------------------------------1.00---------------
..........................................................................................GGGAGGGAGGGATCTAAAA..........................................................................................................................................................................................................191.000.00--------1.00-----------------------------------------------------------------
....................................................................TGGATTAGCGTGGGAACTGAGAGGGAGGGAGGG..................................................................................................................................................................................................................3311.001.00----------------------------------------------------1.00---------------------
..............................................................................................................................................................................TGGGTAGGGAGTGTGAAAAC.....................................................................................................................2011.001.00---------------------------1.00----------------------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAT.....................................................................................191.000.00--------------------1.00-----------------------------------------------------
........................................................................................................................................................................................................................TGAGACCAAGCACTAGACCT...........................................................................201.000.00-----------------------------------------------------1.00--------------------
................................................................................................................................................................................................................GCGGGGCATGAGACCAAGCAA..................................................................................211.000.00----------------------------------1.00---------------------------------------
................AAAGGTTCCAGCAGCTGAC....................................................................................................................................................................................................................................................................................1911.001.00----------------------1.00---------------------------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAG.....................................................................................1921.001.00--------------------0.500.50----------------------------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAACA....................................................................................201.000.00------------------------1.00-------------------------------------------------
..............................................................................................................................................................................TGGGTAGGGAGTGTGTAAC......................................................................................................................191.000.00-----------------------------------------------------------1.00--------------
.................................................................................................................................................................................................................................................................................GATAACCGGGCAGCTCACCGCA................2211.001.00------------------------------------------------------1.00-------------------
...............................................CTGGTGAGGCAGAAAGGAGC....................................................................................................................................................................................................................................................2011.001.00------------------------------1.00-------------------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGC....................................................................................2011.001.00---------------------1.00----------------------------------------------------
....................................................................................................................................................................................................................................................................................AACCGGGCAGCTCACAGCG................191.000.00-------1.00------------------------------------------------------------------
................................................TGGTGAGGCAGAAAGGAGCATG.................................................................................................................................................................................................................................................2211.001.00----------------------------------------------1.00---------------------------
....................................................................TGGATTAGCGTGGGATTG.................................................................................................................................................................................................................................181.000.00---1.00----------------------------------------------------------------------
..................................................................................................................................................................................................................................................................................ATAACCGGGCAGCTCACCGCAT...............2211.001.00------------------1.00-------------------------------------------------------
................................................................................................................................................AAAGCAGCTGGGCCAGAAGGGATCTG.............................................................................................................................................2611.001.00----------------1.00---------------------------------------------------------
..ATGAAGCTCTGGAGAAAGGT.................................................................................................................................................................................................................................................................................................2011.001.00-------------------------1.00------------------------------------------------
.........................................................................................................................................................................................................TATGGGGGCGGGGCATGAT...........................................................................................191.000.00-------------------------------------------------1.00------------------------
........................................................................................................................................................................TGCTTCTGGGTAGGGAGT.............................................................................................................................1811.001.00----------------------------------------1.00---------------------------------
....................................................................................................................................................................................................................................................................GCAAAAGGCCAAAGATAACCG..............................2111.001.00--------------1.00-----------------------------------------------------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGCACTT................................................................................2411.0022.00-------------------------------------------1.00------------------------------
..................AGGTTCCAGCAGCTGACA...................................................................................................................................................................................................................................................................................1811.001.00-----------------1.00--------------------------------------------------------
....................................................................................................................................................................................................................................................................................AACCGGGCAGCTCACCGCATAA.............221.000.00-----1.00--------------------------------------------------------------------
...............GAAAGGTTCCAGCAGCTGACA...................................................................................................................................................................................................................................................................................2111.001.00--------------------------------------------------------1.00-----------------
........CTCTGGAGAAAGGTTCCAGCAGCTGACAAAGC...............................................................................................................................................................................................................................................................................3211.001.00-------------1.00------------------------------------------------------------
...TGAAGCTCTGGAGAAAGG..................................................................................................................................................................................................................................................................................................1811.001.00------------------------------------1.00-------------------------------------
...........TGGAGAAAGGTTCCATG...........................................................................................................................................................................................................................................................................................1780.880.12-----------------------0.12-0.12-0.12--------------------------------0.12-------0.12---0.120.12
..............AGAAAGGTTCCAGCAG.........................................................................................................................................................................................................................................................................................1630.670.67----------------------------------------------------------------0.330.33--------
................................................................................................................................................................................................................GCGGGGCATGAGACCA.......................................................................................1620.500.50--------------------------------------------------------------0.50-----------
.....................................................................................................................................................................................................................................................................................ACCGGGCAGCTCACC...................1520.500.50------------------------------------------------------------0.50-------------
.............GAGAAAGGTTCCAGCAGC........................................................................................................................................................................................................................................................................................1820.500.50-------------------------------------------------------------0.50------------
...............................................................................................................................................................................................................GGCGGGGCATGAGACCAAGAAA..................................................................................2220.501.00---------------------------------------------------------------0.50----------
........................................................................................................................................................................................................................................................................AAGGCCAAAGATAACC...............................1640.250.25----------------------0.25---------------------------------------------------
...........TGGAGAAAGGTTCCATGTG.........................................................................................................................................................................................................................................................................................1980.250.12------------------------0.12-0.12-----------------------------------------------
...........TGGAGAAAGGTTCCATGGT.........................................................................................................................................................................................................................................................................................1980.120.12---------------------------------------------------------------------0.12----
...........TGGAGAAAGGTTCCACGT..........................................................................................................................................................................................................................................................................................1880.120.12------------------------------------------------------------------0.12-------
...........TGGAGAAAGGTTCCATGT..........................................................................................................................................................................................................................................................................................1880.120.12-----------------------------------------------------------------------0.12--
...........TGGAGAAAGGTTCCATGG..........................................................................................................................................................................................................................................................................................1880.120.12-------------------------------------------------------------------0.12------
...........TGGAGAAAGGTTCCA.............................................................................................................................................................................................................................................................................................1580.120.12----------------------------------------------------------------------0.12---

Antisense strand
TCATGAAGCTCTGGAGAAAGGTTCCAGCAGCTGACAAAGCCCCCTACCTGGTGAGGCAGAAAGGAGCATGGATTAGCGTGGGAACTGAGAGGGAGGGAGGGATCTTTGGGTAATTTACCTCAGTTCTTTCCGCTCCCCACTCCTAAAGCAGCTGGGCCAGAAGGGATCTGCTTCTGGGTAGGGAGTGTGAAAACACTACAGTATGGGGGCGGGGCATGAGACCAAGCACTAGGCCCTAAGGCTGTGTCCCATATCCCTCAGCAAAAGGCCAAAGATAACCGGGCAGCTCACCGCATCAACAAGGTGCAGAA
...........................................................................................................................................................................................................((((((.(((((((..............((((....)))))))))))....))))))...................................................
..........................................................................................................................................................................................................203.......................................................261................................................
SizePerfect hitTotal NormPerfect NormSRR387910(GSM843862)
antibody for ip: Ago2. (ago2 cell line)		SRR107297(GSM677704)
18-30nt fraction of small RNA. (cell line)		SRR189786GSM450606(GSM450606)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330913(SRX091751)
tissue: normal skindisease state: normal. (skin)		SRR039611(GSM531974)
Human Normal Liver Tissue Sample 1. (liver)		SRR189784SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR342894(SRX096790)
small RNA seq of Right atrial tissue. (heart)		DRR000557(DRX000315)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033717(GSM497062)
Mentle Cell Lymphoma (MCL112). (B cell)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR039613(GSM531976)
Human Normal Liver Tissue Sample 3. (liver)		SRR060168(GSM565978)
5-8F_nucleus. (cell line)		SRR039619(GSM531982)
HBV(+) HCC Tissue Sample 1. (liver)		SRR039623(GSM531986)
HCV(+) HCC Tissue Sample. (liver)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR094130(GSM651906)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR094132(GSM651908)
small RNA(18-35nt)small RNA deep sequencing o. (uterus)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR343334SRR330903(SRX091741)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR343335SRR330895(SRX091733)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR330872(SRX091710)
tissue: skin psoriatic involveddisease state:. (skin)		SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR033718(GSM497063)
Multiple Myeloma (U266). (B cell)		SRR037936(GSM510474)
293cand1. (cell line)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR191499(GSM715609)
6genomic small RNA (size selected RNA from to. (breast)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR189782SRR039617(GSM531980)
HBV(+) Adjacent Tissue Sample 1. (liver)		SRR033721(GSM497066)
Ly3 cell line (Ly3). (B cell)		SRR040008(GSM532893)
G727N. (cervix)		SRR033727(GSM497072)
HIV-positive DL (HIV412). (B cell)		SRR330901(SRX091739)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR553576(SRX182782)
source: Testis. (testes)		SRR107296(GSM677703)
18-30nt fraction of small RNA. (cell line)		SRR039622(GSM531985)
HCV(+) Adjacent Tissue Sample. (liver)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		TAX577453(Rovira)
total RNA. (breast)		SRR038862(GSM458545)
MM472. (cell line)		SRR330866(SRX091704)
tissue: skin psoriatic involveddisease state:. (skin)		GSM450597(GSM450597)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR330920(SRX091758)
tissue: normal skindisease state: normal. (skin)		TAX577745(Rovira)
total RNA. (breast)		GSM450598(GSM450598)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR039637(GSM518474)
THP1_total_sRNAs. (cell line)		SRR191596(GSM715706)
73genomic small RNA (size selected RNA from t. (breast)		SRR189777(GSM714637)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		GSM359177(GSM359177)
hela_nucl_a. (hela)		SRR040015(GSM532900)
G623T. (cervix)		SRR342897(SRX096793)
small RNA seq of Left atrial tissue. (heart)		SRR330899(SRX091737)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR390723(GSM850202)
total small RNA. (cell line)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		SRR330919(SRX091757)
tissue: normal skindisease state: normal. (skin)		SRR342898(SRX096794)
small RNA seq of Right atrial tissue. (heart)		SRR039616(GSM531979)
HBV(+) Distal Tissue Sample 1. (liver)		SRR330863(SRX091701)
tissue: skin psoriatic involveddisease state:. (skin)		SRR343336SRR033716(GSM497061)
Mentle Cell Lymphoma (MCL114). (B cell)		SRR444062(SRX128910)
Sample 27_3cDNABarcode: AF-PP-343: ACG CTC TT. (skin)		SRR330893(SRX091731)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR387909(GSM843861)
specific-host: Homo sapienshost cell line: Su. (cell line)		SRR343337
.................................................................................................................................................................................GTAGGGAGTGTGAAAAG..................................................................................................................... 172.000.00-----------------------1.00--1.00-----------------------------------------------
..................................................................................................................................CGCTCCCCACTCCTAAA.................................................................................................................................................................... 171.000.00------1.00-------------------------------------------------------------------
..........................................................................................................................................................................................................ATGGGGGCGGGGCATGATG.......................................................................................... 191.000.00------1.00-------------------------------------------------------------------
..................AGGTTCCAGCAGCTGCTG................................................................................................................................................................................................................................................................................... 181.000.00------------------------------------------1.00-------------------------------
.............................................................................................................................................................................................................................................................................CAAAGATAACCGGGCT.......................... 161.000.00---------------------------------------------------------1.00----------------
........................................................................................................................................................................................................................TGAGACCAAGCACTACCT............................................................................. 181.000.00-------------------------------------1.00------------------------------------