ID: uc001rsh.3_intron_1_0_chr12_49162845_r.5p
GENE: (19)
chr12:49164349-49164598-


(1)
B-CELL 		(4)
BREAST 		(3)
CELL-LINE 		(12)
CERVIX 		(3)
HEART 		(1)
KIDNEY 		(2)
LIVER 		(2)
OTHER 		(2)
SKIN 		(1)
XRN.ip

Sense strand
GATGAAGCACATCAATGAGCACTCCTTCAACAATTTCCAGATGAAGATTGGTAAGAGGGCTTTGTTGCTTGGCGGGTTTTCCCAGGACTTTTTCCAGGTGAAGCTGGGATTATAGGCTGGGGATGGGATCACAGATTTCCCATCAGGGCTCCTGTGGGGTTTTCTTCCCTCTGACCTCCTATATCAAGTCTGATATTAAGAACAGAGATCATTAGGCACTGTCCTATAAATTTTTGAGCATATTTTAATC
....................................................................(((...(((((((((((..((..((((((......))))))....)).)))))))...)))).)))....................................................................................................................
.................................................................66...................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR189782SRR040007(GSM532892)
G601T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040036(GSM532921)
G243N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
......................................................................GGCGGGTTTTCCCAGGAAT.................................................................................................................................................................198.000.005.00-1.001.00-----1.00--------------------
......................................................................GGCGGGTTTTCCCAGGATT.................................................................................................................................................................194.000.00---1.001.00------------1.00---------1.00--
......................................................................GGCGGGTTTTCCCAGGTGT.................................................................................................................................................................194.000.003.00-1.00---------------------------
......................................................................GGCGGGTTTTCCCAGGATTCC...............................................................................................................................................................213.000.00-1.00--1.00--------------------1.00----
...............................AATTTCCAGATGAAGATTG........................................................................................................................................................................................................1912.002.00------2.00-----------------------
......................................................................GGCGGGTTTTCCCAGGAATCC...............................................................................................................................................................212.000.001.00-------------------------1.00---
......................................................................GGCGGGTTTTCCCAGGCAG.................................................................................................................................................................192.000.00---1.00---------------1.00----------
......................................................................GGCGGGTTTTCCCAGGAAG.................................................................................................................................................................192.000.001.00----1.00------------------------
......................................................................GGCGGGTTTTCCCAGGAATC................................................................................................................................................................202.000.001.00-1.00---------------------------
......................................................................GGCGGGTTTTCCCAGGGAT.................................................................................................................................................................192.000.00-2.00----------------------------
......................................................................GGCGGGTTTTCCCAGGATG.................................................................................................................................................................192.000.00--1.00-1.00-------------------------
......................................................................GGCGGGTTTTCCCAGGATTCT...............................................................................................................................................................212.000.002.00-----------------------------
......................................................................GGCGGGTTTTCCCAGGAATTC...............................................................................................................................................................211.000.00----------1.00-------------------
......................................................................GGCGGGTTTTCCCAGGAATAA...............................................................................................................................................................211.000.00-----1.00------------------------
......................................................................GGCGGGTTTTCCCAGGAATCT...............................................................................................................................................................211.000.00-----1.00------------------------
......................................................................GGCGGGTTTTCCCAGGACTCC...............................................................................................................................................................2111.001.00-1.00----------------------------
.................................................................................................................AGGCTGGGGATGGGAGCG.......................................................................................................................181.000.00-----------------------1.00------
...................................................................CTTGGCGGGTTTTCCCGG.....................................................................................................................................................................181.000.00--------1.00---------------------
......................................................................GGCGGGTTTTCCCAGGCTT.................................................................................................................................................................191.000.00---------1.00--------------------
...................................TCCAGATGAAGATTGGGCT....................................................................................................................................................................................................191.000.00----------------1.00-------------
....AAGCACATCAATGAGCACT...................................................................................................................................................................................................................................1911.001.00------------1.00-----------------
.......................CCTTCAACAATTTCCAGATGAAGATTGGGC.....................................................................................................................................................................................................301.000.00------------------------1.00-----
.....................CTCCTTCAACAATTTCCAGATG...............................................................................................................................................................................................................2211.001.00-----------1.00------------------
......................................................................GGCGGGTTTTCCCAGGAAC.................................................................................................................................................................191.000.00-1.00----------------------------
......................................................................GGCGGGTTTTCCCAGGGGA.................................................................................................................................................................191.000.00-------1.00----------------------
......................................................................GGCGGGTTTTCCCAGGACT.................................................................................................................................................................1911.001.00-1.00----------------------------
........................................................................................................TGGGATTATAGGCTGGCAGA..............................................................................................................................201.000.00--------------------1.00---------
................................ATTTCCAGATGAAGATTGG.......................................................................................................................................................................................................1911.001.00---------------1.00--------------
......................................................................GGCGGGTTTTCCCAGGAATGC...............................................................................................................................................................211.000.00----------------------1.00-------
......................................................................GGCGGGTTTTCCCAGTGAT.................................................................................................................................................................191.000.001.00-----------------------------
....................................................................................................................................................................................................TAAGAACAGAGATCATTAGGCACT..............................2411.001.00---------------------1.00--------
......................................................................GGCGGGTTTTCCCAGGACTC................................................................................................................................................................2011.001.001.00-----------------------------
..........................................................................GGTTTTCCCAGGACTAACT.............................................................................................................................................................191.000.00--1.00---------------------------
......................................................................GGCGGGTTTTCCCAGGGGTA................................................................................................................................................................201.000.00----------1.00-------------------
......................................................................GGCGGGTTTTCCCAGGATTC................................................................................................................................................................201.000.001.00-----------------------------
......................................................................GGCGGGTTTTCCCAGGCAGC................................................................................................................................................................201.000.00-------1.00----------------------
......................................................................GGCGGGTTTTCCCAGGGAA.................................................................................................................................................................191.000.001.00-----------------------------
...........................................................................................................................TGGGATCACAGATTTATTA............................................................................................................191.000.00--------1.00---------------------
......................................................................GGCGGGTTTTCCCAGGATC.................................................................................................................................................................191.000.001.00-----------------------------
............................AACAATTTCCAGATGAAGATT.........................................................................................................................................................................................................2111.001.00--------------1.00---------------
......................................................................GGCGGGTTTTCCCAGGGTGG................................................................................................................................................................201.000.001.00-----------------------------
......................................................................GGCGGGTTTTCCCAGGAGT.................................................................................................................................................................191.000.001.00-----------------------------
..............................................................................TTCCCAGGACTTTTTCCAG.........................................................................................................................................................1920.500.50-----------------------------0.50
..............ATGAGCACTCCTTCAACA..........................................................................................................................................................................................................................1820.500.50----------------------------0.50-

Antisense strand
GATGAAGCACATCAATGAGCACTCCTTCAACAATTTCCAGATGAAGATTGGTAAGAGGGCTTTGTTGCTTGGCGGGTTTTCCCAGGACTTTTTCCAGGTGAAGCTGGGATTATAGGCTGGGGATGGGATCACAGATTTCCCATCAGGGCTCCTGTGGGGTTTTCTTCCCTCTGACCTCCTATATCAAGTCTGATATTAAGAACAGAGATCATTAGGCACTGTCCTATAAATTTTTGAGCATATTTTAATC
....................................................................(((...(((((((((((..((..((((((......))))))....)).)))))))...)))).)))....................................................................................................................
.................................................................66...................................................................135.................................................................................................................
SizePerfect hitTotal NormPerfect NormSRR040029(GSM532914)
G026T. (cervix)		SRR040011(GSM532896)
G529T. (cervix)		SRR040037(GSM532922)
G243T. (cervix)		SRR040031(GSM532916)
G013T. (cervix)		SRR040039(GSM532924)
G531T. (cervix)		TAX577744(Rovira)
total RNA. (breast)		SRR039625(GSM531988)
HBV(-) HCV(-) HCC Tissue Sample. (liver)		SRR040028(GSM532913)
G026N. (cervix)		SRR189782SRR040007(GSM532892)
G601T. (cervix)		TAX577743(Rovira)
total RNA. (breast)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR191605(GSM715715)
76genomic small RNA (size selected RNA from t. (breast)		SRR189784SRR330905(SRX091743)
tissue: normal skindisease state: normal. (skin)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR039618(GSM531981)
HBV(+) Side Tissue Sample 1. (liver)		SRR040036(GSM532921)
G243N. (cervix)		SRR330896(SRX091734)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR040022(GSM532907)
G575N. (cervix)		SRR189780(GSM714640)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)		SRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR040012(GSM532897)
G648N. (cervix)		SRR033728(GSM497073)
MALT (MALT413). (B cell)		SRR342895(SRX096791)
small RNA seq of Left atrial tissue. (heart)		TAX577453(Rovira)
total RNA. (breast)		SRR040024(GSM532909)
G613N. (cervix)		SRR040015(GSM532900)
G623T. (cervix)		SRR342901(SRX096797)
small RNA seq of Left atrial tissue. (heart)		SRR189779(GSM714639)
cell line: HEK293clip variant: PAR-CLIPenzyma. (cell line)
...............................................................GTTGCTTGGCGGGTTTCCA........................................................................................................................................................................ 191.000.00-------------1.00----------------
..........................................CAAGCAACAAAGCCCTCTTACCAATCTTC................................................................................................................................................................................... 2911.001.00------------------1.00-----------
............................................................................................................ATTATAGGCTGGGGATATCT.......................................................................................................................... 201.000.00---1.00--------------------------