ID: uc001rse.1_intron_7_0_chr12_49108308_r.3p
GENE: (1)
chr12:49108258-49108507-


(6)
B-CELL 		(1)
BRAIN 		(3)
BREAST 		(18)
CELL-LINE 		(1)
HEART 		(1)
HELA 		(1)
KIDNEY 		(1)
LIVER 		(3)
OTHER 		(1)
RRP40.ip 		(8)
SKIN 		(1)
XRN.ip

Sense strand
GGCATTGTGCTAAGTGTCAGTTGGCGATTAATAATTTGGTGAAAGAAAACAGACATATTCTTTGATTTGGAGAGATAAGTATGATTTTCATTTAGTAGTATCTACTTGCTTGGCCATTTCATCCTTTTGGGAGGGAGATAGAGGTTATCTTTTCCAGAATTATACCTGCCTGTTTTTGGATCTTAACTTGAACACTTCAGCTCACAATTGACTATCAACACTGCTATAGTATACATGCATCGATTCTACA
...................................................................................................................(((((.(((.....)))..)))))..((((((.....(((((((..............)))))))...)))))).............................................................
............................................................................................................109........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR038857(GSM458540)
D20. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343335
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGA.................................................231157.0022.00138.002.002.003.00-2.00----2.001.001.00----1.001.00----1.00--1.00-------1.00-----1.00--
.................................................................................................................................................................................GGATCTTAACTTGAACACTTCAGA.................................................24161.003.0052.007.00-----------1.00-------------------------1.00---
................................................................................................................................................................................TGGATCTTAACTTGAACACTTCAGA.................................................25125.004.0018.00---2.00-1.00----1.00----1.00--------1.00--1.00--------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAG..................................................22122.0022.0016.002.00---1.00------1.00------------------1.00----1.00------
......................................................................................................................................................................................TTAACTTGAACACTTCAGA.................................................19112.002.0011.00-------------------------------1.00----------
.................................................................................................................................................................................GGATCTTAACTTGAACACTTCAGAA................................................2517.003.006.00-----1.00------------------------------------
...............................................................................................................................................................................TTGGATCTTAACTTGAACACTTCAGA.................................................2616.004.006.00------------------------------------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGC.................................................2316.006.002.004.00-----------------------------------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGAA................................................2415.0022.005.00------------------------------------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTC....................................................2015.005.00-3.002.00----------------------------------------
................................................................................................................................................................................TGGATCTTAACTTGAACACTTCAGAA................................................2615.004.001.001.00----1.00------------------------------1.001.00----
................................................................................................................................................................................TGGATCTTAACTTGAACACTTCAG..................................................2414.004.00----1.00---------------1.00-1.00-------1.00------------
...............................................................................................................................................................................TTGGATCTTAACTTGAACACTTCAG..................................................2514.004.001.00--------1.00-----1.00-------------1.00-------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGTA................................................2414.0022.004.00------------------------------------------
.............................................................................................................................................................................TTTTGGATCTTAACTTGAACACTTCAGA.................................................2813.001.003.00------------------------------------------
.................................................................................................................................................................................GGATCTTAACTTGAACACTTCAG..................................................2313.003.001.002.00-----------------------------------------
......................................................................................................................................................................................TTAACTTGAACACTTCAG..................................................1812.002.002.00------------------------------------------
..................................................................................................................................................................................................................ACTATCAACACTGCTACAG.....................192.000.00-------2.00-----------------------------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCA...................................................2112.002.002.00------------------------------------------
..............................................................................................................................................................................TTTGGATCTTAACTTGAACACTTCAG..................................................2612.002.00---------1.00----1.00----------------------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGTCTT..............................................2611.0022.001.00------------------------------------------
..............................................................................................................................................................................TTTGGATCTTAACTTGAACACTTCA...................................................2511.001.00-------------1.00-----------------------------
.................................................................................................................CCATTTCATCCTTTTTTTA......................................................................................................................191.000.00-------------------1.00-----------------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGG.................................................2311.0022.001.00------------------------------------------
.................................................................................................................................................................................GGATCTTAACTTGAACACTTCA...................................................2211.001.00--------1.00----------------------------------
.................................................................................................................................................................................................................................ATAGTATACATGCATCGATTC....2111.001.00---------------------1.00---------------------
.........................................................................................................................................ATAGAGGTTATCTTTTCCAGAATTATACCTGCCTGTTTTTGGATCTTAACTTGAACACTTCAG..................................................6311.001.00-----------------------------------1.00-------
...............................................................................................................................................................................TTGGATCTTAACTTGAACACTTC....................................................2311.001.00--------1.00----------------------------------
.............................................................................................................................................................................TTTTGGATCTTAACTTGAACACTTCAG..................................................2711.001.00------------------------1.00------------------
...............................................................................................................................................................................................................TTGACTATCAACACTTA..........................171.000.00---------------------------------1.00---------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGAAG...............................................2511.0022.001.00------------------------------------------
..................................................................................................................................................................................................................ACTATCAACACTGCTATAGTATACATG.............2711.001.00---------------------------1.00---------------
..................................................................................................................................................................................GATCTTAACTTGAACACTTCAGAT................................................2411.0022.001.00------------------------------------------
................................................................................................................................................................................................................TGACTATCAACACTG...........................1550.200.20------------------------------------------0.20

Antisense strand
GGCATTGTGCTAAGTGTCAGTTGGCGATTAATAATTTGGTGAAAGAAAACAGACATATTCTTTGATTTGGAGAGATAAGTATGATTTTCATTTAGTAGTATCTACTTGCTTGGCCATTTCATCCTTTTGGGAGGGAGATAGAGGTTATCTTTTCCAGAATTATACCTGCCTGTTTTTGGATCTTAACTTGAACACTTCAGCTCACAATTGACTATCAACACTGCTATAGTATACATGCATCGATTCTACA
...................................................................................................................(((((.(((.....)))..)))))..((((((.....(((((((..............)))))))...)))))).............................................................
............................................................................................................109........................................................................................200................................................
SizePerfect hitTotal NormPerfect NormSRR207115(GSM721077)
XRN1&2 knockdown. (XRN1/XRN2 cell line)		SRR207116(GSM721078)
Nuclear RNA. (cell line)		SRR207112(GSM721074)
RRP40 knockdown. (RRP40 cell line)		SRR033725(GSM497070)
Unmutated CLL (CLLU626). (B cell)		SRR033713(GSM497058)
Burkitt Lymphoma (BL115). (B cell)		SRR326280(GSM769510)
total cell content of unperturbed cells was s. (cell line)		SRR060981(GSM569185)
Human centroblast [09-001]. (cell line)		SRR189784SRR207111(GSM721073)
Whole cell RNA. (cell line)		DRR000556(DRX000314)
"THP-1 whole cell RNA, after 3 day treatment . (cell line)		SRR033724(GSM497069)
L428 cell line (L428). (B cell)		SRR033726(GSM497071)
Mututated CLL (CLLM633). (B cell)		SRR039612(GSM531975)
Human Normal Liver Tissue Sample 2. (liver)		SRR326282(GSM769512)
"Dicer mRNA was knocked down using siDicer, t. (cell line)		SRR330889(SRX091727)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR330865(SRX091703)
tissue: skin psoriatic involveddisease state:. (skin)		SRR060983(GSM569187)
Human pre-germinal center B cell [09-001]. (cell line)		SRR191536(GSM715646)
183genomic small RNA (size selected RNA from . (breast)		SRR330879(SRX091717)
tissue: skin psoriatic involveddisease state:. (skin)		SRR189775(GSM714635)
cell line: HEK293clip variant: CLIPenzymatic . (cell line)		SRR033722(GSM497067)
KMS12 cell line (KMS12). (B cell)		SRR191480(GSM715590)
38genomic small RNA (size selected RNA from t. (breast)		SRR553575(SRX182781)
source: Kidney. (Kidney)		SRR326279(GSM769509)
cytoplasmic fraction was isolated using PARIS. (cell line)		SRR330891(SRX091729)
tissue: skin psoriatic uninvolveddisease stat. (skin)		SRR060984(GSM569188)
Human plasma cell [09-001]. (cell line)		SRR330923(SRX091761)
tissue: normal skindisease state: normal. (skin)		SRR189782SRR330911(SRX091749)
tissue: normal skindisease state: normal. (skin)		SRR039192(GSM494811)
K562 cell line is derived from a CML patient . (cell line)		SRR060982(GSM569186)
Human centrocyte [09-001]. (cell line)		SRR330917(SRX091755)
tissue: normal skindisease state: normal. (skin)		SRR039193(GSM494812)
HL60 cell line is derived from acute promyelo. (cell line)		SRR015448(SRR015448)
cytoplasmic small RNAs. (breast)		SRR330862(SRX091700)
tissue: skin psoriatic involveddisease state:. (skin)		DRR001483(DRX001037)
"Hela long cytoplasmic cell fraction, control. (hela)		SRR038857(GSM458540)
D20. (cell line)		SRR033730(GSM497075)
Lymphoblastic (ALL411). (B cell)		SRR060986(GSM569190)
Human memory B cell [09-001]. (cell line)		GSM450605(GSM450605)
miRNA sequencing raw reads from post-mortem s. (brain)		SRR037944(GSM510482)
293DcrTN_cand5. (cell line)		SRR342899(SRX096795)
small RNA seq of Left atrial tissue. (heart)		SRR343335
......................................................................................................ATGGCCAAGCAAGTA..................................................................................................................................... 1550.200.20-----------------------------------------0.20-